FFCP PHASE1:Mm9::chr4:54958725..54958736,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=100 | |MCL_coexpression_id=100 | ||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:54958725..54958736,- | |||
|description=CAGE_peak_at_chr4:54958725..54958736,- | |description=CAGE_peak_at_chr4:54958725..54958736,- | ||
|id=chr4:54958725..54958736,- | |id=chr4:54958725..54958736,- | ||
|ontology_enrichment_celltype=CL:0000117!1.28e-09!23;CL:0000337!1.28e-09!23;CL:0002609!1.18e-08!6;CL:0000540!7.74e-07!33;CL:0000047!7.74e-07!33;CL:0000031!7.74e-07!33;CL:0000404!7.74e-07!33 | |ontology_enrichment_celltype=CL:0000117!1.28e-09!23;CL:0000337!1.28e-09!23;CL:0002609!1.18e-08!6;CL:0000540!7.74e-07!33;CL:0000047!7.74e-07!33;CL:0000031!7.74e-07!33;CL:0000404!7.74e-07!33 | ||
|ontology_enrichment_celltype_v019_2=CL:0002609,2.34e-41,6;CL:0000117,5.71e-27,23;CL:0000337,5.71e-27,23;CL:0000540,9.03e-19,33;CL:0000047,9.03e-19,33;CL:0000031,9.03e-19,33;CL:0000404,9.03e-19,33;CL:0000393,7.36e-16,39;CL:0000211,7.36e-16,39;CL:0002319,2.29e-14,43;CL:0000221,4.90e-14,44;CL:0000133,4.90e-14,44;CL:0002608,4.93e-14,3;CL:0002613,1.20e-13,3;CL:0002321,1.01e-08,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!4.15e-10!71;UBERON:0003075!4.15e-10!71;UBERON:0007284!4.15e-10!71;UBERON:0003056!1.42e-09!49;UBERON:0002020!5.05e-09!34;UBERON:0001444!2.69e-08!11;UBERON:0000033!4.59e-08!63;UBERON:0000970!8.47e-08!9;UBERON:0000019!8.47e-08!9;UBERON:0000047!8.47e-08!9;UBERON:0004088!8.47e-08!9;UBERON:0002104!8.47e-08!9;UBERON:0001456!8.47e-08!9;UBERON:0003072!8.47e-08!9;UBERON:0003071!8.47e-08!9;UBERON:0004128!8.47e-08!9;UBERON:0004121!9.01e-08!102;UBERON:0000924!9.01e-08!102;UBERON:0006601!9.01e-08!102;UBERON:0002791!5.60e-07!29;UBERON:0003528!5.60e-07!29;UBERON:0001893!5.60e-07!29 | |ontology_enrichment_uberon=UBERON:0002346!4.15e-10!71;UBERON:0003075!4.15e-10!71;UBERON:0007284!4.15e-10!71;UBERON:0003056!1.42e-09!49;UBERON:0002020!5.05e-09!34;UBERON:0001444!2.69e-08!11;UBERON:0000033!4.59e-08!63;UBERON:0000970!8.47e-08!9;UBERON:0000019!8.47e-08!9;UBERON:0000047!8.47e-08!9;UBERON:0004088!8.47e-08!9;UBERON:0002104!8.47e-08!9;UBERON:0001456!8.47e-08!9;UBERON:0003072!8.47e-08!9;UBERON:0003071!8.47e-08!9;UBERON:0004128!8.47e-08!9;UBERON:0004121!9.01e-08!102;UBERON:0000924!9.01e-08!102;UBERON:0006601!9.01e-08!102;UBERON:0002791!5.60e-07!29;UBERON:0003528!5.60e-07!29;UBERON:0001893!5.60e-07!29 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003528,1.90e-16,29;UBERON:0002791,1.90e-16,29;UBERON:0001893,1.90e-16,29;UBERON:0002020,5.15e-14,34;UBERON:0002780,3.36e-12,39;UBERON:0001890,3.36e-12,39;UBERON:0006240,3.36e-12,39;UBERON:0000956,5.22e-12,21;UBERON:0001869,5.22e-12,21;UBERON:0000203,5.22e-12,21;UBERON:0003080,6.83e-12,40;UBERON:0002616,2.56e-10,46;UBERON:0000955,4.29e-10,47;UBERON:0006238,4.29e-10,47;UBERON:0003056,1.13e-09,49;UBERON:0001049,4.21e-09,52;UBERON:0005068,4.21e-09,52;UBERON:0006241,4.21e-09,52;UBERON:0007135,4.21e-09,52;UBERON:0000073,9.32e-09,54;UBERON:0000369,1.43e-08,5;UBERON:0002435,1.43e-08,5;UBERON:0000204,1.43e-08,5;UBERON:0010082,1.43e-08,5;UBERON:0001017,2.39e-08,73;UBERON:0001016,4.08e-08,75;UBERON:0002346,2.39e-07,64;UBERON:0003075,2.39e-07,64;UBERON:0007284,2.39e-07,64 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61853168687678,0,0,0,0,0,0,0,0,0,2.90330914463737,2.43010688997043,3.36519938162211,0.285650984403804,0.220868540951614,1.71487118900936,1.91690942036473,0,0,0,0,0.395658863190582,1.09785172322892,1.04182674111352,0,0,0,0,0,0.559198337475902,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230615497256059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502617408451458,0,0,0,0,0,0,0,0,0.130120442962704,0.459804208866946,0.180062129805349,0.452114453507145,0.0680364991513279,0.2562274405697,0.187403449119458,0,0,0,0.527853372491847,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0.0810688095458557,0,0,0,0,0.617427674275707,0,0,0.426576501070468,0,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0,0.252470927204373,0,0,0.215423397732799,0,0,0,0,0,0,0,0,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,1.03135543248187,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621339313086926,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0.19318959403219,0,0,0,0,0,0,0,0.171853182343688,0,0,0.675022500231806,0,0,0,0.415149390336707,0,0,0.486213434136588,0,0,0,0.206035057238894,0.320919209591815,0,0,0,0,0,0,0.476293691283074,0.347652977834566,0,0,0,0,0.177475806159338,0.238436189947321,0,0.0941093804153306,0.0846146078916765,0,0,0.407412341537585,0,0,0.0985044823755635,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61853168687678,0,0,0,0,0,0,0,0,0,2.90330914463737,2.43010688997043,3.36519938162211,0.285650984403804,0.220868540951614,1.71487118900936,1.91690942036473,0,0,0,0,0.395658863190582,1.09785172322892,1.04182674111352,0,0,0,0,0,0.559198337475902,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230615497256059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502617408451458,0,0,0,0,0,0,0,0,0.130120442962704,0.459804208866946,0.180062129805349,0.452114453507145,0.0680364991513279,0.2562274405697,0.187403449119458,0,0,0,0.527853372491847,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0.0810688095458557,0,0,0,0,0.617427674275707,0,0,0.426576501070468,0,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0,0.252470927204373,0,0,0.215423397732799,0,0,0,0,0,0,0,0,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,1.03135543248187,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621339313086926,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0.19318959403219,0,0,0,0,0,0,0,0.171853182343688,0,0,0.675022500231806,0,0,0,0.415149390336707,0,0,0.486213434136588,0,0,0,0.206035057238894,0.320919209591815,0,0,0,0,0,0,0.476293691283074,0.347652977834566,0,0,0,0,0.177475806159338,0.238436189947321,0,0.0941093804153306,0.0846146078916765,0,0,0.407412341537585,0,0,0.0985044823755635,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr4:54958725..54958736,- | |short_description=p@chr4:54958725..54958736,- | ||
}} | }} |
Latest revision as of 14:33, 5 August 2015
Short description: | p@chr4:54958725..54958736, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:54958725..54958736, - |
Coexpression cluster: | MCL_coexpression_mm9:100 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 2.34e-41 | 6 |
CNS neuron (sensu Vertebrata) | 5.71e-27 | 23 |
neuroblast (sensu Vertebrata) | 5.71e-27 | 23 |
neuron | 9.03e-19 | 33 |
neuronal stem cell | 9.03e-19 | 33 |
neuroblast | 9.03e-19 | 33 |
electrically signaling cell | 9.03e-19 | 33 |
electrically responsive cell | 7.36e-16 | 39 |
electrically active cell | 7.36e-16 | 39 |
neural cell | 2.29e-14 | 43 |
ectodermal cell | 4.90e-14 | 44 |
neurectodermal cell | 4.90e-14 | 44 |
hippocampal neuron | 4.93e-14 | 3 |
striatum neuron | 1.20e-13 | 3 |
embryonic cell | 1.01e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
brain grey matter | 1.90e-16 | 29 |
regional part of telencephalon | 1.90e-16 | 29 |
telencephalon | 1.90e-16 | 29 |
gray matter | 5.15e-14 | 34 |
regional part of forebrain | 3.36e-12 | 39 |
forebrain | 3.36e-12 | 39 |
future forebrain | 3.36e-12 | 39 |
cerebral cortex | 5.22e-12 | 21 |
cerebral hemisphere | 5.22e-12 | 21 |
pallium | 5.22e-12 | 21 |
anterior neural tube | 6.83e-12 | 40 |
regional part of brain | 2.56e-10 | 46 |
brain | 4.29e-10 | 47 |
future brain | 4.29e-10 | 47 |
pre-chordal neural plate | 1.13e-09 | 49 |
neural tube | 4.21e-09 | 52 |
neural rod | 4.21e-09 | 52 |
future spinal cord | 4.21e-09 | 52 |
neural keel | 4.21e-09 | 52 |
regional part of nervous system | 9.32e-09 | 54 |
corpus striatum | 1.43e-08 | 5 |
striatum | 1.43e-08 | 5 |
ventral part of telencephalon | 1.43e-08 | 5 |
future corpus striatum | 1.43e-08 | 5 |
central nervous system | 2.39e-08 | 73 |
nervous system | 4.08e-08 | 75 |
neurectoderm | 2.39e-07 | 64 |
neural plate | 2.39e-07 | 64 |
presumptive neural plate | 2.39e-07 | 64 |