FFCP PHASE1:Hg19::chr2:161056802..161056815,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:161056802..161056815,-
|short_description=p2@ITGB6
|description=CAGE_peak_2_at_ITGB6_5end
|association_with_transcript=0bp_to_ENST00000283249,ENST000004095...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3694 | |EntrezGene=3694 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6161 | |HGNC=6161 | ||
|TSSclassifier=strong | |||
|UniProt=P18564,F8WBJ8 | |UniProt=P18564,F8WBJ8 | ||
|association_with_transcript=0bp_to_ENST00000283249,ENST00000409583,ENST00000409872,uc010fov.1_5end | |||
|cluster_id=chr2:161056802..161056815,- | |||
|coexpression_cluster_id=C1497 | |||
|description=CAGE_peak_2_at_ITGB6_5end | |||
|id=chr2:161056802..161056815,- | |||
|ontology_enrichment_celltype=CL:0002076!2.17e-24!43;CL:0000066!3.48e-23!254;CL:0000223!3.22e-17!59;CL:0002368!2.39e-13!13;CL:0002251!1.11e-09!21;CL:0002159!1.79e-09!13;CL:0002202!1.82e-08!9;CL:0002632!1.82e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;6.53e-19;42!CL:0002368;3.59e-15;13!CL:0000349;7.40e-12;19!CL:0002159;6.26e-10;14!CL:0002202;8.31e-09;9!CL:0002632;8.31e-09;9!CL:0000244;4.82e-08;4!CL:0000731;4.82e-08;4!CL:0002251;5.87e-08;20!CL:0002621;1.24e-07;3!CL:0002577;1.93e-07;3!CL:0002166;2.65e-07;3!CL:0002541;4.54e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,5.28e-24,42;CL:0000066,8.90e-21,253;CL:0000223,1.21e-16,58;CL:0002368,2.21e-15,13;CL:0000349,7.51e-12,19;CL:0002159,7.24e-10,14;CL:0002202,6.69e-09,9;CL:0002632,6.69e-09,9;CL:0002251,5.43e-08,20;CL:0000244,5.99e-08,4;CL:0000731,5.99e-08,4;CL:0002621,1.26e-07,3;CL:0002577,1.99e-07,3;CL:0002166,2.71e-07,3;CL:0002541,4.50e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;4.55e-09;58 | |||
|ontology_enrichment_disease=DOID:1749!2.07e-13!14;DOID:305!3.52e-10!106;DOID:299!5.57e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.29e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.13e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.93e-27!169;UBERON:0000925!2.93e-27!169;UBERON:0006595!2.93e-27!169;UBERON:0001007!1.32e-18!155;UBERON:0001555!1.32e-18!155;UBERON:0007026!1.32e-18!155;UBERON:0005631!8.16e-15!14;UBERON:0000158!8.16e-15!14;UBERON:0004921!3.90e-14!129;UBERON:0004185!3.90e-14!129;UBERON:0005911!1.38e-13!82;UBERON:0001004!1.54e-13!72;UBERON:0000077!2.04e-13!130;UBERON:0005153!1.22e-12!37;UBERON:0005178!1.63e-11!34;UBERON:0002224!1.63e-11!34;UBERON:0000065!1.71e-11!53;UBERON:0005181!5.16e-11!35;UBERON:0003124!8.43e-11!7;UBERON:0000464!3.07e-10!104;UBERON:0000915!2.46e-09!52;UBERON:0005157!4.26e-09!51;UBERON:0000064!5.42e-09!219;UBERON:0000466!6.07e-09!126;UBERON:0000062!6.62e-09!511;UBERON:0000344!7.17e-09!12;UBERON:0005177!1.12e-08!107;UBERON:0006554!1.32e-08!44;UBERON:0002048!1.67e-08!22;UBERON:0000117!1.67e-08!22;UBERON:0000171!1.67e-08!22;UBERON:0000170!1.67e-08!22;UBERON:0005597!1.67e-08!22;UBERON:0000118!1.67e-08!22;UBERON:0000478!2.35e-08!24;UBERON:0001008!2.76e-08!45;UBERON:0000161!1.07e-07!35;UBERON:0007196!1.39e-07!14;UBERON:0001558!1.39e-07!14;UBERON:0008947!1.69e-07!38;UBERON:0003258!1.69e-07!38;UBERON:0000365!1.70e-07!5;UBERON:0009569!1.98e-07!113;UBERON:0004175!2.77e-07!25;UBERON:0000160!4.58e-07!27;UBERON:0004807!5.30e-07!28;UBERON:0002294!5.38e-07!7;UBERON:0001173!5.38e-07!7;UBERON:0004912!5.38e-07!7;UBERON:0004923!5.42e-07!57;UBERON:0001987!7.28e-07!4;UBERON:0004340!7.28e-07!4;UBERON:0000468!7.50e-07!659;UBERON:0001041!9.60e-07!98 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;3.53e-13;10!UBERON:0000158;3.53e-13;10!UBERON:0000478;3.95e-12;24!UBERON:0000486;6.29e-10;12!UBERON:0000365;7.69e-10;5!UBERON:0002294;2.68e-09;7!UBERON:0001173;2.68e-09;7!UBERON:0005178;5.86e-09;34!UBERON:0002224;5.86e-09;34!UBERON:0001987;7.16e-09;4!UBERON:0005910;4.08e-08;6!UBERON:0005911;4.46e-08;36!UBERON:0000305;4.60e-08;7!UBERON:0001949;1.24e-07;3!UBERON:0005181;2.18e-07;35!UBERON:0003124;4.54e-07;3!UBERON:0000920;4.54e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,6.55e-24,160;UBERON:0000925,6.55e-24,160;UBERON:0006595,6.55e-24,160;UBERON:0005631,3.44e-20,14;UBERON:0000158,3.44e-20,14;UBERON:0001007,2.64e-14,145;UBERON:0001555,2.64e-14,145;UBERON:0007026,2.64e-14,145;UBERON:0003124,2.80e-14,7;UBERON:0005911,2.20e-12,82;UBERON:0000478,4.21e-12,24;UBERON:0001004,3.90e-10,74;UBERON:0006554,6.93e-10,47;UBERON:0005178,7.55e-10,34;UBERON:0002224,7.55e-10,34;UBERON:0000365,9.76e-10,5;UBERON:0001008,1.41e-09,48;UBERON:0005181,1.87e-09,35;UBERON:0004921,2.08e-09,118;UBERON:0005153,3.60e-09,37;UBERON:0001987,7.18e-09,4;UBERON:0004340,7.18e-09,4;UBERON:0000065,1.55e-08,54;UBERON:0004923,2.84e-08,66;UBERON:0000305,4.61e-08,7;UBERON:0005910,4.95e-08,6;UBERON:0001949,1.26e-07,3;UBERON:0005157,2.78e-07,47;UBERON:0000920,4.50e-07,3;UBERON:0002294,5.42e-07,9;UBERON:0001173,5.42e-07,9;UBERON:0004912,5.42e-07,9;UBERON:0004871,5.68e-07,8;UBERON:0005177,7.87e-07,101 | |||
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| ||
|short_description=p2@ITGB6 | |||
}} | }} |
Latest revision as of 19:45, 17 September 2015
Short description: | p2@ITGB6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ITGB6_5end |
Coexpression cluster: | C1497_amniotic_Mallassezderived_Prostate_Urothelial_papillotubular_Gingival_Amniotic |
Association with transcript: | 0bp_to_ENST00000283249, ENST00000409583, ENST00000409872, uc010fov.1_5end |
EntrezGene: | ITGB6 |
HGNC: | 6161 |
UniProt: | P18564F8WBJ8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 5.28e-24 | 42 |
epithelial cell | 8.90e-21 | 253 |
endodermal cell | 1.21e-16 | 58 |
respiratory epithelial cell | 2.21e-15 | 13 |
extraembryonic cell | 7.51e-12 | 19 |
general ecto-epithelial cell | 7.24e-10 | 14 |
epithelial cell of tracheobronchial tree | 6.69e-09 | 9 |
epithelial cell of lower respiratory tract | 6.69e-09 | 9 |
epithelial cell of alimentary canal | 5.43e-08 | 20 |
transitional epithelial cell | 5.99e-08 | 4 |
urothelial cell | 5.99e-08 | 4 |
gingival epithelial cell | 1.26e-07 | 3 |
placental epithelial cell | 1.99e-07 | 3 |
epithelial cell of Malassez | 2.71e-07 | 3 |
chorionic membrane mesenchymal stem cell | 4.50e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 6.55e-24 | 160 |
endoderm | 6.55e-24 | 160 |
presumptive endoderm | 6.55e-24 | 160 |
extraembryonic membrane | 3.44e-20 | 14 |
membranous layer | 3.44e-20 | 14 |
digestive system | 2.64e-14 | 145 |
digestive tract | 2.64e-14 | 145 |
primitive gut | 2.64e-14 | 145 |
chorion | 2.80e-14 | 7 |
endo-epithelium | 2.20e-12 | 82 |
extraembryonic structure | 4.21e-12 | 24 |
respiratory system | 3.90e-10 | 74 |
urinary system structure | 6.93e-10 | 47 |
thoracic cavity element | 7.55e-10 | 34 |
thoracic cavity | 7.55e-10 | 34 |
urothelium | 9.76e-10 | 5 |
renal system | 1.41e-09 | 48 |
thoracic segment organ | 1.87e-09 | 35 |
subdivision of digestive tract | 2.08e-09 | 118 |
epithelial bud | 3.60e-09 | 37 |
placenta | 7.18e-09 | 4 |
allantois | 7.18e-09 | 4 |
respiratory tract | 1.55e-08 | 54 |
organ component layer | 2.84e-08 | 66 |
amnion | 4.61e-08 | 7 |
transitional epithelium | 4.95e-08 | 6 |
gingival epithelium | 1.26e-07 | 3 |
epithelial fold | 2.78e-07 | 47 |
egg chorion | 4.50e-07 | 3 |
biliary system | 5.42e-07 | 9 |
biliary tree | 5.42e-07 | 9 |
biliary bud | 5.42e-07 | 9 |
somatic layer of lateral plate mesoderm | 5.68e-07 | 8 |
trunk region element | 7.87e-07 | 101 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.13e-09 | 14 |