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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004994
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004994
|accession_numbers=CAGE;DRX008402;DRR009274;DRZ000699;DRZ002084;DRZ012049;DRZ013434
|accession_numbers_RNASeq=sRNA-Seq;DRX037067;DRR041433;DRZ007075
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000178,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000178,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000226,CL:0000080,CL:0000842
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000226,CL:0000080,CL:0000842
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.45!283.88!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.36!226.93!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.12!129.64!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!2.02!103.54!IRF8;;chr1:25256756..25256774,-!p1@RUNX3!1.89!140.86!RUNX3;;chr14:75746722..75746777,+!p2@FOS!1.88!94.91!FOS;;chr19:45971246..45971265,+!p1@FOSB!1.85!1221.81!FOSB;;chr5:133451294..133451310,+!p2@TCF7!1.85!69.03!TCF7;;chr2:157189180..157189290,-!p1@NR4A2!1.83!330.04!NR4A2;;chr14:75745523..75745537,+!p1@FOS!1.81!7095.70!FOS;;chr19:54058073..54058088,+!p1@ZNF331!1.81!63.42!ZNF331;;chr2:192015701..192015743,-!p1@STAT4!1.79!81.76!STAT4;;chr19:54041669..54041697,+!p2@ZNF331!1.79!60.62!ZNF331;;chr11:47400062..47400077,-!p2@SPI1!1.74!53.93!SPI1;;chr6:91006518..91006570,-!p1@BACH2!1.68!105.05!BACH2;;chr7:50344289..50344323,+!p1@IKZF1!1.67!45.52!IKZF1;;chr7:50343634..50343717,+!p2@IKZF1!1.67!45.30!IKZF1;;chr11:47399947..47399961,-!p3@SPI1!1.67!45.30!SPI1;;chr3:63953435..63953499,+!p1@ATXN7!1.64!42.50!ATXN7;;chr20:39317868..39317884,-!p1@MAFB!1.63!471.55!MAFB;;chr9:102584262..102584276,+!p1@NR4A3!1.63!90.82!NR4A3;;chrX:106960285..106960299,-!p1@TSC22D3!1.61!1006.31!TSC22D3;;chr2:145277640..145277771,-!p1@ZEB2!1.61!501.97!ZEB2;;chr12:72056800..72056834,+!p1@THAP2!1.60!52.20!THAP2;;chr14:35872453..35872485,-!p2@NFKBIA!1.59!91.46!NFKBIA;;chr14:35873947..35873965,-!p1@NFKBIA!1.58!2209.56!NFKBIA;;chrX:106960180..106960197,-!p2@TSC22D3!1.58!134.82!TSC22D3;;chr14:35872962..35873025,-!p3@NFKBIA!1.57!87.80!NFKBIA;;chr11:47399996..47400014,-!p4@SPI1!1.53!33.00!SPI1;;chr8:123793988..123794016,+!p1@ZHX2!1.52!55.44!ZHX2;;chr3:71355163..71355209,-!p5@FOXP1!1.52!44.01!FOXP1;;chr14:35872926..35872951,-!p4@NFKBIA!1.51!43.36!NFKBIA;;chr9:117150254..117150271,-!p1@AKNA!1.50!82.40!AKNA;;chr4:109087445..109087463,-!p1@LEF1!1.50!30.85!LEF1;;chr12:54778351..54778378,-!p6@ZNF385A!1.49!29.55!ZNF385A;;chrX:106960221..106960236,-!p3@TSC22D3!1.48!78.95!TSC22D3;;chr6:391743..391759,+!p1@IRF4!1.48!29.34!IRF4;;chr7:115670804..115670825,-!p1@TFEC!1.48!29.12!TFEC;;chr5:133450365..133450444,+!p1@TCF7!1.47!126.41!TCF7;;chr20:50159198..50159299,-!p1@NFATC2!1.47!40.99!NFATC2;;chrY:21906594..21906622,-!p1@KDM5D!1.46!27.83!KDM5D;;chr2:145271342..145271377,-!p5@ZEB2!1.45!27.18!ZEB2;;chr17:38497662..38497713,+!p4@RARA!1.43!29.98!RARA;;chr2:70142232..70142251,+!p1@MXD1!1.42!139.35!MXD1;;chr2:231090433..231090469,+!p1@SP140!1.42!25.45!SP140;;chr3:71542615..71542644,-!p12@FOXP1!1.41!24.59!FOXP1;;chr3:39195075..39195088,-!p1@CSRNP1!1.39!141.94!CSRNP1;;chr3:18486354..18486377,-!p2@SATB1!1.39!29.55!SATB1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.38!31.93!NFKBIZ;;chr6:106546808..106546833,+!p3@PRDM1!1.37!28.26!PRDM1;;chr10:8096631..8096660,+!p1@GATA3!1.37!27.18!GATA3;;chr19:16435625..16435682,+!p1@KLF2!1.36!671.95!KLF2;;chr2:61108695..61108753,+!p1@REL!1.36!146.90!REL;;chr19:12902289..12902307,+!p1@JUNB!1.34!4567.75!JUNB;;chr6:12011943..12012015,+!p2@HIVEP1!1.33!63.85!HIVEP1;;chr10:35484053..35484076,+!p1@CREM!1.33!50.05!CREM;;chr2:157189617..157189667,-!p4@NR4A2!1.33!20.49!NR4A2;;chr2:68592394..68592405,+!p2@PLEK!1.33!20.49!PLEK;;chr4:103422499..103422632,+!p1@NFKB1!1.32!401.23!NFKB1;;chr9:102584128..102584144,+!p3@NR4A3!1.32!37.75!NR4A3;;chr9:102584241..102584261,+!p4@NR4A3!1.32!30.63!NR4A3;;chr2:192015750..192015793,-!p2@STAT4!1.32!26.75!STAT4;;chrY:2803415..2803468,+!p1@ZFY!1.32!20.06!ZFY;;chr5:131826457..131826514,-!p1@IRF1!1.30!726.09!IRF1;;chr6:91006575..91006602,-!p2@BACH2!1.30!27.83!BACH2;;chr3:128212033..128212051,-!p1@GATA2!1.30!18.98!GATA2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.29!931.67!NFKBIZ;;chr6:106534192..106534224,+!p1@PRDM1!1.29!51.99!PRDM1;;chr11:47400032..47400043,-!p5@SPI1!1.28!18.12!SPI1;;chr14:64971288..64971316,-!p2@ZBTB25!1.27!53.07!ZBTB25;;chr10:104154246..104154347,+!p3@NFKB2!1.25!100.52!NFKB2;;chr6:144385698..144385742,-!p2@PLAGL1!1.25!20.28!PLAGL1;;chr17:45810594..45810608,+!p1@TBX21!1.25!16.61!TBX21;;chr9:110252035..110252057,-!p1@KLF4!1.24!253.90!KLF4;;chr19:54041645..54041661,+!p5@ZNF331!1.24!16.39!ZNF331;;chr4:109090075..109090095,-!p2@LEF1!1.23!16.18!LEF1;;chrX:106960249..106960260,-!p5@TSC22D3!1.22!24.81!TSC22D3;;chr12:54694758..54694805,-!p1@NFE2!1.22!18.98!NFE2;;chr2:192015677..192015691,-!p3@STAT4!1.22!15.75!STAT4;;chr5:133451347..133451358,+!p3@TCF7!1.22!15.53!TCF7;;chr8:81397820..81397836,+!p2@ZBTB10!1.21!18.98!ZBTB10;;chr10:51572408..51572454,+!p3@NCOA4!1.20!86.50!NCOA4;;chr9:102584159..102584174,+!p2@NR4A3!1.20!26.53!NR4A3;;chr8:81397846..81397860,+!p3@ZBTB10!1.20!18.77!ZBTB10;;chr19:33793430..33793447,-!p1@CEBPA!1.19!61.26!CEBPA;;chr2:208394817..208394834,+!p3@CREB1!1.19!57.81!CREB1;;chr14:35872494..35872511,-!p5@NFKBIA!1.19!19.41!NFKBIA;;chr3:39195037..39195069,-!p2@CSRNP1!1.18!86.93!CSRNP1;;chr12:72056773..72056796,+!p3@THAP2!1.18!18.55!THAP2;;chr14:35872542..35872553,-!p10@NFKBIA!1.18!14.24!NFKBIA;;chr17:38020392..38020477,-!p1@IKZF3!1.18!14.02!IKZF3;;chr21:36421535..36421610,-!p2@RUNX1!1.17!48.75!RUNX1;;chr9:3525727..3525828,-!p2@RFX3!1.17!34.95!RFX3;;chr19:36391434..36391450,-!p1@NFKBID!1.17!27.18!NFKBID;;chr14:35872414..35872425,-!p7@NFKBIA!1.17!15.53!NFKBIA;;chr6:44233252..44233296,-!p1@NFKBIE!1.16!131.59!NFKBIE;;chr7:128577972..128578047,+!p1@IRF5!1.16!21.36!IRF5;;chr11:47400045..47400060,-!p6@SPI1!1.16!13.37!SPI1;;chr10:3827371..3827386,-!p2@KLF6!1.15!108.72!KLF6;;chr2:145275162..145275202,-!p2@ZEB2!1.15!77.23!ZEB2;;chr10:35416142..35416169,+!p3@CREM!1.15!34.73!CREM;;chr20:56195474..56195506,-!p1@ZBP1!1.15!13.16!ZBP1;;chr19:42636586..42636607,-!p1@POU2F2!1.14!35.16!POU2F2;;chr19:45250948..45250998,+!p3@BCL3!1.13!31.71!BCL3;;chr8:81397876..81397898,+!p5@ZBTB10!1.12!14.45!ZBTB10;;chr7:50344251..50344288,+!p3@IKZF1!1.12!12.30!IKZF1;;chr14:35874077..35874091,-!p8@NFKBIA!1.12!12.30!NFKBIA;;chr2:231090471..231090504,+!p2@SP140!1.12!12.30!SP140;;chr10:104154415..104154434,+!p5@NFKB2!1.12!12.08!NFKB2;;chr19:50922187..50922204,+!p1@SPIB!1.12!12.08!SPIB;;chr21:34442439..34442455,+!p1@OLIG1!1.12!12.08!OLIG1;;chr12:52445218..52445237,+!p1@NR4A1!1.11!150.35!NR4A1;;chr2:97202480..97202499,+!p1@ARID5A!1.11!118.86!ARID5A;;chr7:104654718..104654741,+!p3@MLL5!1.11!17.26!MLL5;;chr2:61108808..61108821,+!p3@REL!1.11!14.88!REL;;chr6:106534230..106534254,+!p2@PRDM1!1.10!29.12!PRDM1;;chr13:41593425..41593480,-!p1@ELF1!1.09!72.05!ELF1;;chr15:60884706..60884743,-!p1@RORA!1.09!58.46!RORA;;chr1:25256439..25256476,-!p3@RUNX3!1.09!11.43!RUNX3;;chr2:100759010..100759035,-!p1@AFF3!1.09!11.43!AFF3;;chr2:61108878..61108891,+!p5@REL!1.09!11.22!REL;;chr14:75746781..75746799,+!p6@FOS!1.09!11.22!FOS;;chr16:31885093..31885165,+!p1@ZNF267!1.08!167.39!ZNF267;;chr2:208031542..208031595,-!p2@KLF7!1.08!77.66!KLF7;;chr7:106809470..106809481,+!p2@HBP1!1.08!15.53!HBP1;;chr17:38497715..38497734,+!p8@RARA!1.08!11.00!RARA;;chr10:94449703..94449718,+!p1@HHEX!1.07!42.28!HHEX;;chr10:8096772..8096787,+!p2@GATA3!1.07!12.73!GATA3;;chr7:50343895..50343936,+!p5@IKZF1!1.07!10.79!IKZF1;;chr6:15246261..15246312,+!p1@JARID2!1.06!254.97!JARID2;;chr4:106068026..106068084,+!p1@TET2!1.06!94.48!TET2;;chr1:156470515..156470542,-!p2@MEF2D!1.06!54.79!MEF2D;;chr7:149470641..149470694,-!p1@ZNF467!1.06!47.46!ZNF467;;chr7:104654690..104654704,+!p2@MLL5!1.06!20.92!MLL5;;chr6:12009042..12009092,+!p6@HIVEP1!1.06!13.81!HIVEP1;;chr3:71542651..71542683,-!p22@FOXP1!1.06!10.35!FOXP1;;chr11:128563948..128564003,+!p1@FLI1!1.05!125.55!FLI1;;chr1:59249688..59249703,-!p3@JUN!1.05!61.48!JUN;;chr19:45252008..45252024,+!p2@BCL3!1.05!34.08!BCL3;;chr9:102584278..102584285,+!p5@NR4A3!1.05!10.14!NR4A3;;chr9:110250697..110250738,-!p2@KLF4!1.04!11.86!KLF4;;chr1:151030536..151030549,+!p8@MLLT11!1.04!9.92!MLLT11;;chr3:18487057..18487105,-!p4@SATB1!1.04!9.92!SATB1;;chr3:71542684..71542720,-!p18@FOXP1!1.04!9.92!FOXP1;;chr5:172483347..172483407,+!p1@C5orf41!1.03!74.85!CREBRF;;chr22:38597987..38598021,+!p2@MAFF!1.02!58.46!MAFF;;chr18:3448455..3448480,+!p5@TGIF1!1.02!17.47!TGIF1;;chr19:45972701..45972774,+!p2@FOSB!1.02!12.94!FOSB;;chrX:129244454..129244488,-!p1@ELF4!1.01!67.30!ELF4;;chr2:157198916..157198978,-!p2@NR4A2!1.01!33.22!NR4A2;;chr19:12721790..12721810,+!p2@ZNF791!1.01!26.10!ZNF791;;chr6:15246200..15246214,+!p2@JARID2!1.01!26.10!JARID2;;chr14:64970670..64970712,-!p3@ZBTB25!1.01!20.06!ZBTB25;;chr6:143266297..143266356,-!p1@HIVEP2!1.00!44.87!HIVEP2;;chr7:17338324..17338341,+!p3@AHR!1.00!30.85!AHR;;chr19:19729477..19729542,-!p1@PBX4!1.00!19.63!PBX4;;chr5:142782823..142782854,-!p3@NR3C1!1.00!12.94!NR3C1;;chr3:39195139..39195150,-!p3@CSRNP1!1.00!11.65!CSRNP1;;chr14:75747250..75747267,+!p5@FOS!1.00!9.06!FOS;;chr10:104155480..104155534,+!p2@NFKB2!0.99!58.24!NFKB2;;chr3:187463179..187463201,-!p2@BCL6!0.99!37.10!BCL6;;chr11:113930425..113930471,+!p1@ZBTB16!0.99!12.94!ZBTB16;;chr14:99738138..99738163,-!p1@BCL11B!0.99!8.84!BCL11B;;chr2:61108650..61108687,+!p2@REL!0.98!42.71!REL;;chrX:153305787..153305807,-!p3@MECP2!0.98!8.63!MECP2;;chr2:43453734..43453751,-!p1@ZFP36L2!0.97!907.08!ZFP36L2;;chr11:111249993..111250006,-!p1@POU2AF1!0.97!8.41!POU2AF1;;chr11:47399920..47399931,-!p7@SPI1!0.97!8.41!SPI1;;chr19:45504688..45504782,+!p1@RELB!0.96!50.26!RELB;;chr1:59249707..59249727,-!p1@JUN!0.95!339.32!JUN;;chr1:212782094..212782109,+!p1@ATF3!0.95!221.75!ATF3;;chr17:38498594..38498661,+!p2@RARA!0.95!27.18!RARA;;chrX:101186981..101187030,-!p1@ZMAT1!0.95!26.32!ZMAT1;;chr12:72056749..72056767,+!p6@THAP2!0.95!8.84!THAP2;;chr13:74707894..74707947,-!p6@KLF12!0.95!8.84!KLF12;;chr3:5020939..5020952,+!p2@BHLHE40!0.94!25.02!BHLHE40;;chr8:71316428..71316459,-!p2@NCOA2!0.94!13.16!NCOA2;;chr2:61108771..61108789,+!p4@REL!0.94!11.86!REL;;chr4:38665769..38665801,+!p2@KLF3!0.93!70.75!KLF3;;chr18:77155922..77155939,+!p1@NFATC1!0.93!21.14!NFATC1;;chr19:13213662..13213686,-!p1@LYL1!0.93!11.22!LYL1;;chr4:83822199..83822239,+!p2@THAP9!0.93!9.06!THAP9;;chr14:64971461..64971542,+!p1@ZBTB1!0.92!154.02!ZBTB1;;chr15:31619326..31619390,+!p2@KLF13!0.92!87.36!KLF13;;chr5:88178983..88179012,-!p1@MEF2C!0.92!59.32!MEF2C;;ch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|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.45!283.88!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.36!226.93!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.12!129.64!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!2.02!103.54!IRF8;;chr1:25256756..25256774,-!p1@RUNX3!1.89!140.86!RUNX3;;chr14:75746722..75746777,+!p2@FOS!1.88!94.91!FOS;;chr19:45971246..45971265,+!p1@FOSB!1.85!1221.81!FOSB;;chr5:133451294..133451310,+!p2@TCF7!1.85!69.03!TCF7;;chr2:157189180..157189290,-!p1@NR4A2!1.83!330.04!NR4A2;;chr14:75745523..75745537,+!p1@FOS!1.81!7095.70!FOS;;chr19:54058073..54058088,+!p1@ZNF331!1.81!63.42!ZNF331;;chr2:192015701..192015743,-!p1@STAT4!1.79!81.76!STAT4;;chr19:54041669..54041697,+!p2@ZNF331!1.79!60.62!ZNF331;;chr11:47400062..47400077,-!p2@SPI1!1.74!53.93!SPI1;;chr6:91006518..91006570,-!p1@BACH2!1.68!105.05!BACH2;;chr7:50344289..50344323,+!p1@IKZF1!1.67!45.52!IKZF1;;chr7:50343634..50343717,+!p2@IKZF1!1.67!45.30!IKZF1;;chr11:47399947..47399961,-!p3@SPI1!1.67!45.30!SPI1;;chr3:63953435..63953499,+!p1@ATXN7!1.64!42.50!ATXN7;;chr20:39317868..39317884,-!p1@MAFB!1.63!471.55!MAFB;;chr9:102584262..102584276,+!p1@NR4A3!1.63!90.82!NR4A3;;chrX:106960285..106960299,-!p1@TSC22D3!1.61!1006.31!TSC22D3;;chr2:145277640..145277771,-!p1@ZEB2!1.61!501.97!ZEB2;;chr12:72056800..72056834,+!p1@THAP2!1.60!52.20!THAP2;;chr14:35872453..35872485,-!p2@NFKBIA!1.59!91.46!NFKBIA;;chr14:35873947..35873965,-!p1@NFKBIA!1.58!2209.56!NFKBIA;;chrX:106960180..106960197,-!p2@TSC22D3!1.58!134.82!TSC22D3;;chr14:35872962..35873025,-!p3@NFKBIA!1.57!87.80!NFKBIA;;chr11:47399996..47400014,-!p4@SPI1!1.53!33.00!SPI1;;chr8:123793988..123794016,+!p1@ZHX2!1.52!55.44!ZHX2;;chr3:71355163..71355209,-!p5@FOXP1!1.52!44.01!FOXP1;;chr14:35872926..35872951,-!p4@NFKBIA!1.51!43.36!NFKBIA;;chr9:117150254..117150271,-!p1@AKNA!1.50!82.40!AKNA;;chr4:109087445..109087463,-!p1@LEF1!1.50!30.85!LEF1;;chr12:54778351..54778378,-!p6@ZNF385A!1.49!29.55!ZNF385A;;chrX:106960221..106960236,-!p3@TSC22D3!1.48!78.95!TSC22D3;;chr6:391743..391759,+!p1@IRF4!1.48!29.34!IRF4;;chr7:115670804..115670825,-!p1@TFEC!1.48!29.12!TFEC;;chr5:133450365..133450444,+!p1@TCF7!1.47!126.41!TCF7;;chr20:50159198..50159299,-!p1@NFATC2!1.47!40.99!NFATC2;;chrY:21906594..21906622,-!p1@KDM5D!1.46!27.83!KDM5D;;chr2:145271342..145271377,-!p5@ZEB2!1.45!27.18!ZEB2;;chr17:38497662..38497713,+!p4@RARA!1.43!29.98!RARA;;chr2:70142232..70142251,+!p1@MXD1!1.42!139.35!MXD1;;chr2:231090433..231090469,+!p1@SP140!1.42!25.45!SP140;;chr3:71542615..71542644,-!p12@FOXP1!1.41!24.59!FOXP1;;chr3:39195075..39195088,-!p1@CSRNP1!1.39!141.94!CSRNP1;;chr3:18486354..18486377,-!p2@SATB1!1.39!29.55!SATB1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.38!31.93!NFKBIZ;;chr6:106546808..106546833,+!p3@PRDM1!1.37!28.26!PRDM1;;chr10:8096631..8096660,+!p1@GATA3!1.37!27.18!GATA3;;chr19:16435625..16435682,+!p1@KLF2!1.36!671.95!KLF2;;chr2:61108695..61108753,+!p1@REL!1.36!146.90!REL;;chr19:12902289..12902307,+!p1@JUNB!1.34!4567.75!JUNB;;chr6:12011943..12012015,+!p2@HIVEP1!1.33!63.85!HIVEP1;;chr10:35484053..35484076,+!p1@CREM!1.33!50.05!CREM;;chr2:157189617..157189667,-!p4@NR4A2!1.33!20.49!NR4A2;;chr2:68592394..68592405,+!p2@PLEK!1.33!20.49!PLEK;;chr4:103422499..103422632,+!p1@NFKB1!1.32!401.23!NFKB1;;chr9:102584128..102584144,+!p3@NR4A3!1.32!37.75!NR4A3;;chr9:102584241..102584261,+!p4@NR4A3!1.32!30.63!NR4A3;;chr2:192015750..192015793,-!p2@STAT4!1.32!26.75!STAT4;;chrY:2803415..2803468,+!p1@ZFY!1.32!20.06!ZFY;;chr5:131826457..131826514,-!p1@IRF1!1.30!726.09!IRF1;;chr6:91006575..91006602,-!p2@BACH2!1.30!27.83!BACH2;;chr3:128212033..128212051,-!p1@GATA2!1.30!18.98!GATA2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.29!931.67!NFKBIZ;;chr6:106534192..106534224,+!p1@PRDM1!1.29!51.99!PRDM1;;chr11:47400032..47400043,-!p5@SPI1!1.28!18.12!SPI1;;chr14:64971288..64971316,-!p2@ZBTB25!1.27!53.07!ZBTB25;;chr10:104154246..104154347,+!p3@NFKB2!1.25!100.52!NFKB2;;chr6:144385698..144385742,-!p2@PLAGL1!1.25!20.28!PLAGL1;;chr17:45810594..45810608,+!p1@TBX21!1.25!16.61!TBX21;;chr9:110252035..110252057,-!p1@KLF4!1.24!253.90!KLF4;;chr19:54041645..54041661,+!p5@ZNF331!1.24!16.39!ZNF331;;chr4:109090075..109090095,-!p2@LEF1!1.23!16.18!LEF1;;chrX:106960249..106960260,-!p5@TSC22D3!1.22!24.81!TSC22D3;;chr12:54694758..54694805,-!p1@NFE2!1.22!18.98!NFE2;;chr2:192015677..192015691,-!p3@STAT4!1.22!15.75!STAT4;;chr5:133451347..133451358,+!p3@TCF7!1.22!15.53!TCF7;;chr8:81397820..81397836,+!p2@ZBTB10!1.21!18.98!ZBTB10;;chr10:51572408..51572454,+!p3@NCOA4!1.20!86.50!NCOA4;;chr9:102584159..102584174,+!p2@NR4A3!1.20!26.53!NR4A3;;chr8:81397846..81397860,+!p3@ZBTB10!1.20!18.77!ZBTB10;;chr19:33793430..33793447,-!p1@CEBPA!1.19!61.26!CEBPA;;chr2:208394817..208394834,+!p3@CREB1!1.19!57.81!CREB1;;chr14:35872494..35872511,-!p5@NFKBIA!1.19!19.41!NFKBIA;;chr3:39195037..39195069,-!p2@CSRNP1!1.18!86.93!CSRNP1;;chr12:72056773..72056796,+!p3@THAP2!1.18!18.55!THAP2;;chr14:35872542..35872553,-!p10@NFKBIA!1.18!14.24!NFKBIA;;chr17:38020392..38020477,-!p1@IKZF3!1.18!14.02!IKZF3;;chr21:36421535..36421610,-!p2@RUNX1!1.17!48.75!RUNX1;;chr9:3525727..3525828,-!p2@RFX3!1.17!34.95!RFX3;;chr19:36391434..36391450,-!p1@NFKBID!1.17!27.18!NFKBID;;chr14:35872414..35872425,-!p7@NFKBIA!1.17!15.53!NFKBIA;;chr6:44233252..44233296,-!p1@NFKBIE!1.16!131.59!NFKBIE;;chr7:128577972..128578047,+!p1@IRF5!1.16!21.36!IRF5;;chr11:47400045..47400060,-!p6@SPI1!1.16!13.37!SPI1;;chr10:3827371..3827386,-!p2@KLF6!1.15!108.72!KLF6;;chr2:145275162..145275202,-!p2@ZEB2!1.15!77.23!ZEB2;;chr10:35416142..35416169,+!p3@CREM!1.15!34.73!CREM;;chr20:56195474..56195506,-!p1@ZBP1!1.15!13.16!ZBP1;;chr19:42636586..42636607,-!p1@POU2F2!1.14!35.16!POU2F2;;chr19:45250948..45250998,+!p3@BCL3!1.13!31.71!BCL3;;chr8:81397876..81397898,+!p5@ZBTB10!1.12!14.45!ZBTB10;;chr7:50344251..50344288,+!p3@IKZF1!1.12!12.30!IKZF1;;chr14:35874077..35874091,-!p8@NFKBIA!1.12!12.30!NFKBIA;;chr2:231090471..231090504,+!p2@SP140!1.12!12.30!SP140;;chr10:104154415..104154434,+!p5@NFKB2!1.12!12.08!NFKB2;;chr19:50922187..50922204,+!p1@SPIB!1.12!12.08!SPIB;;chr21:34442439..34442455,+!p1@OLIG1!1.12!12.08!OLIG1;;chr12:52445218..52445237,+!p1@NR4A1!1.11!150.35!NR4A1;;chr2:97202480..97202499,+!p1@ARID5A!1.11!118.86!ARID5A;;chr7:104654718..104654741,+!p3@MLL5!1.11!17.26!MLL5;;chr2:61108808..61108821,+!p3@REL!1.11!14.88!REL;;chr6:106534230..106534254,+!p2@PRDM1!1.10!29.12!PRDM1;;chr13:41593425..41593480,-!p1@ELF1!1.09!72.05!ELF1;;chr15:60884706..60884743,-!p1@RORA!1.09!58.46!RORA;;chr1:25256439..25256476,-!p3@RUNX3!1.09!11.43!RUNX3;;chr2:100759010..100759035,-!p1@AFF3!1.09!11.43!AFF3;;chr2:61108878..61108891,+!p5@REL!1.09!11.22!REL;;chr14:75746781..75746799,+!p6@FOS!1.09!11.22!FOS;;chr16:31885093..31885165,+!p1@ZNF267!1.08!167.39!ZNF267;;chr2:208031542..208031595,-!p2@KLF7!1.08!77.66!KLF7;;chr7:106809470..106809481,+!p2@HBP1!1.08!15.53!HBP1;;chr17:38497715..38497734,+!p8@RARA!1.08!11.00!RARA;;chr10:94449703..94449718,+!p1@HHEX!1.07!42.28!HHEX;;chr10:8096772..8096787,+!p2@GATA3!1.07!12.73!GATA3;;chr7:50343895..50343936,+!p5@IKZF1!1.07!10.79!IKZF1;;chr6:15246261..15246312,+!p1@JARID2!1.06!254.97!JARID2;;chr4:106068026..106068084,+!p1@TET2!1.06!94.48!TET2;;chr1:156470515..156470542,-!p2@MEF2D!1.06!54.79!MEF2D;;chr7:149470641..149470694,-!p1@ZNF467!1.06!47.46!ZNF467;;chr7:104654690..104654704,+!p2@MLL5!1.06!20.92!MLL5;;chr6:12009042..12009092,+!p6@HIVEP1!1.06!13.81!HIVEP1;;chr3:71542651..71542683,-!p22@FOXP1!1.06!10.35!FOXP1;;chr11:128563948..128564003,+!p1@FLI1!1.05!125.55!FLI1;;chr1:59249688..59249703,-!p3@JUN!1.05!61.48!JUN;;chr19:45252008..45252024,+!p2@BCL3!1.05!34.08!BCL3;;chr9:102584278..102584285,+!p5@NR4A3!1.05!10.14!NR4A3;;chr9:110250697..110250738,-!p2@KLF4!1.04!11.86!KLF4;;chr1:151030536..151030549,+!p8@MLLT11!1.04!9.92!MLLT11;;chr3:18487057..18487105,-!p4@SATB1!1.04!9.92!SATB1;;chr3:71542684..71542720,-!p18@FOXP1!1.04!9.92!FOXP1;;chr5:172483347..172483407,+!p1@C5orf41!1.03!74.85!CREBRF;;chr22:38597987..38598021,+!p2@MAFF!1.02!58.46!MAFF;;chr18:3448455..3448480,+!p5@TGIF1!1.02!17.47!TGIF1;;chr19:45972701..45972774,+!p2@FOSB!1.02!12.94!FOSB;;chrX:129244454..129244488,-!p1@ELF4!1.01!67.30!ELF4;;chr2:157198916..157198978,-!p2@NR4A2!1.01!33.22!NR4A2;;chr19:12721790..12721810,+!p2@ZNF791!1.01!26.10!ZNF791;;chr6:15246200..15246214,+!p2@JARID2!1.01!26.10!JARID2;;chr14:64970670..64970712,-!p3@ZBTB25!1.01!20.06!ZBTB25;;chr6:143266297..143266356,-!p1@HIVEP2!1.00!44.87!HIVEP2;;chr7:17338324..17338341,+!p3@AHR!1.00!30.85!AHR;;chr19:19729477..19729542,-!p1@PBX4!1.00!19.63!PBX4;;chr5:142782823..142782854,-!p3@NR3C1!1.00!12.94!NR3C1;;chr3:39195139..39195150,-!p3@CSRNP1!1.00!11.65!CSRNP1;;chr14:75747250..75747267,+!p5@FOS!1.00!9.06!FOS;;chr10:104155480..104155534,+!p2@NFKB2!0.99!58.24!NFKB2;;chr3:187463179..187463201,-!p2@BCL6!0.99!37.10!BCL6;;chr11:113930425..113930471,+!p1@ZBTB16!0.99!12.94!ZBTB16;;chr14:99738138..99738163,-!p1@BCL11B!0.99!8.84!BCL11B;;chr2:61108650..61108687,+!p2@REL!0.98!42.71!REL;;chrX:153305787..153305807,-!p3@MECP2!0.98!8.63!MECP2;;chr2:43453734..43453751,-!p1@ZFP36L2!0.97!907.08!ZFP36L2;;chr11:111249993..111250006,-!p1@POU2AF1!0.97!8.41!POU2AF1;;chr11:47399920..47399931,-!p7@SPI1!0.97!8.41!SPI1;;chr19:45504688..45504782,+!p1@RELB!0.96!50.26!RELB;;chr1:59249707..59249727,-!p1@JUN!0.95!339.32!JUN;;chr1:212782094..212782109,+!p1@ATF3!0.95!221.75!ATF3;;chr17:38498594..38498661,+!p2@RARA!0.95!27.18!RARA;;chrX:101186981..101187030,-!p1@ZMAT1!0.95!26.32!ZMAT1;;chr12:72056749..72056767,+!p6@THAP2!0.95!8.84!THAP2;;chr13:74707894..74707947,-!p6@KLF12!0.95!8.84!KLF12;;chr3:5020939..5020952,+!p2@BHLHE40!0.94!25.02!BHLHE40;;chr8:71316428..71316459,-!p2@NCOA2!0.94!13.16!NCOA2;;chr2:61108771..61108789,+!p4@REL!0.94!11.86!REL;;chr4:38665769..38665801,+!p2@KLF3!0.93!70.75!KLF3;;chr18:77155922..77155939,+!p1@NFATC1!0.93!21.14!NFATC1;;chr19:13213662..13213686,-!p1@LYL1!0.93!11.22!LYL1;;chr4:83822199..83822239,+!p2@THAP9!0.93!9.06!THAP9;;chr14:64971461..64971542,+!p1@ZBTB1!0.92!154.02!ZBTB1;;chr15:31619326..31619390,+!p2@KLF13!0.92!87.36!KLF13;;chr5:88178983..88179012,-!p1@MEF2C!0.92!59.32!MEF2C;;ch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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000842;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Peripheral%2520Blood%2520Mononuclear%2520Cells%252c%2520donor2.CNhs11958.11312-117C7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Peripheral%2520Blood%2520Mononuclear%2520Cells%252c%2520donor2.CNhs11958.11312-117C7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Peripheral%2520Blood%2520Mononuclear%2520Cells%252c%2520donor2.CNhs11958.11312-117C7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Peripheral%2520Blood%2520Mononuclear%2520Cells%252c%2520donor2.CNhs11958.11312-117C7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Peripheral%2520Blood%2520Mononuclear%2520Cells%252c%2520donor2.CNhs11958.11312-117C7.hg38.nobarcode.ctss.bed.gz
|id=FF:11312-117C7
|id=FF:11312-117C7
|is_a=EFO:0002091;;FF:0000135
|is_a=EFO:0002091;;FF:0000135
|is_obsolete=
|is_obsolete=
|library_id=CNhs11958
|library_id_phase_based=2:CNhs11958
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11312
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.CGTACG.11312
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11312
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.CGTACG.11312
|name=Peripheral Blood Mononuclear Cells, donor2
|name=Peripheral Blood Mononuclear Cells, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11958,LSID836,release011,COMPLETED
|profile_hcage=CNhs11958,LSID836,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10005,,,
|profile_srnaseq=SRhi10005,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 62: Line 82:
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|sample_category=primary cells
Line 85: Line 106:
|top_motifs=RUNX1..3:3.44021910671;ETS1,2:3.37024871142;PAX3,7:3.26353505301;NFKB1_REL_RELA:3.11810917673;SPI1:3.05998085384;ATF5_CREB3:3.04664930938;SPIB:2.95990958733;PAX2:2.930717661;DMAP1_NCOR{1,2}_SMARC:2.76845300942;ATF4:2.72940166107;CREB1:2.70375909855;FOX{D1,D2}:2.4827541483;FOXO1,3,4:2.37466477617;CEBPA,B_DDIT3:2.3370116932;NFIL3:2.19671549292;ELF1,2,4:2.12798683104;RXRA_VDR{dimer}:2.07982786769;FOXN1:2.07909124546;TGIF1:2.03636026601;BACH2:2.00869726209;BPTF:1.89107450028;FOS_FOS{B,L1}_JUN{B,D}:1.89089071045;JUN:1.86043128363;PITX1..3:1.85145196116;MAFB:1.81495267096;HMX1:1.80378511757;IRF1,2:1.78766222754;HIF1A:1.76698237528;RFX2..5_RFXANK_RFXAP:1.71457014925;NANOG{mouse}:1.70170748058;HLF:1.66803680778;FOXP1:1.61228118854;FOSL2:1.58298241647;NFATC1..3:1.56270948612;FOX{F1,F2,J1}:1.54167789009;NFE2:1.49534495746;FOXP3:1.45935031757;RORA:1.42021104915;T:1.41120382529;IRF7:1.34316249957;EP300:1.30093120498;ATF2:1.26564207501;ATF6:1.18659730415;STAT2,4,6:0.989994086398;SREBF1,2:0.955362139809;NFE2L1:0.933296742471;HMGA1,2:0.928948727679;NKX2-1,4:0.819216367352;NFE2L2:0.722428565332;IKZF2:0.675054493104;TLX2:0.642830020691;SMAD1..7,9:0.476961605262;ZBTB16:0.347738961105;TOPORS:0.248992048781;CDX1,2,4:0.238685993885;BREu{core}:0.210462292733;PAX8:0.209614417507;NKX3-1:0.164981558513;POU2F1..3:0.155520687925;EGR1..3:0.151919284108;SPZ1:0.123830394637;GATA4:0.0866364301964;GLI1..3:0.0801294148501;RBPJ:0.0426300311917;HOXA9_MEIS1:0.0219330748046;FOXD3:0.00574397006742;PAX6:0.0037326474389;MYFfamily:-0.0813955772401;RFX1:-0.102386293584;HBP1_HMGB_SSRP1_UBTF:-0.11538235627;NR5A1,2:-0.132965745809;SOX2:-0.201801579293;PPARG:-0.202471230278;RXR{A,B,G}:-0.245528056268;AHR_ARNT_ARNT2:-0.248496156775;TBX4,5:-0.257996236501;MYB:-0.258172755068;FOXL1:-0.288301315419;HES1:-0.305139230577;ALX4:-0.306208226372;NKX6-1,2:-0.31474751438;MEF2{A,B,C,D}:-0.32229118406;XBP1:-0.327846942146;TFAP4:-0.329311234494;POU5F1:-0.331549210037;GATA6:-0.342688677694;HSF1,2:-0.406853670828;TAL1_TCF{3,4,12}:-0.478274097956;FOX{I1,J2}:-0.496082597172;ZEB1:-0.506366364427;AIRE:-0.515064609949;NANOG:-0.525825587693;STAT1,3:-0.55791815107;MZF1:-0.560877943856;TFCP2:-0.57030029231;SRF:-0.579391649558;ESR1:-0.608234958105;OCT4_SOX2{dimer}:-0.610167634714;PDX1:-0.62005680097;NR1H4:-0.630267154188;ESRRA:-0.643644761662;PATZ1:-0.668067139525;MTE{core}:-0.669314892067;NR6A1:-0.772924333338;GCM1,2:-0.781225850816;STAT5{A,B}:-0.7888336054;E2F1..5:-0.792628801286;ZFP161:-0.797646449177;HNF4A_NR2F1,2:-0.800706599133;PAX5:-0.81560851037;ZNF384:-0.853100983418;ZNF238:-0.862323210048;NHLH1,2:-0.864484068197;RREB1:-0.868752857633;MED-1{core}:-0.87961744248;TFAP2{A,C}:-0.889949383417;SOX5:-0.903879385985;SNAI1..3:-0.909037440384;MTF1:-0.914802627101;SP1:-0.950223774507;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01668211947;PRDM1:-1.042597941;EN1,2:-1.04423520655;TFAP2B:-1.05441213327;PAX4:-1.06494192643;MYOD1:-1.08404246368;HOX{A5,B5}:-1.09771091982;REST:-1.10546857186;LEF1_TCF7_TCF7L1,2:-1.1161617214;DBP:-1.1315719251;HNF1A:-1.18683376928;ZNF148:-1.19849867765;ZNF423:-1.20989616917;NFIX:-1.25199117346;FOXA2:-1.28509088374;HIC1:-1.28612608858;PRRX1,2:-1.30164562514;NFY{A,B,C}:-1.31874463508;TFDP1:-1.32374275746;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.33284470934;MAZ:-1.34970352374;ELK1,4_GABP{A,B1}:-1.35015883587;FOXQ1:-1.35429335117;LMO2:-1.36108620747;VSX1,2:-1.42945358161;TBP:-1.43865056955;FOXM1:-1.44099169907;SOX{8,9,10}:-1.50595502912;EVI1:-1.52580460323;ZBTB6:-1.54837690025;IKZF1:-1.56236279998;AR:-1.58325868587;CUX2:-1.63953636732;NRF1:-1.66976596251;XCPE1{core}:-1.70902821802;EBF1:-1.71408692635;POU6F1:-1.77476427621;bHLH_family:-1.77765571696;GTF2I:-1.79393578629;ADNP_IRX_SIX_ZHX:-1.80085269705;PBX1:-1.81182191728;NR3C1:-1.81990220457;GZF1:-1.85206692129;GTF2A1,2:-1.87352901398;ZIC1..3:-1.91993986617;MYBL2:-1.94971503699;KLF4:-1.9498791639;TLX1..3_NFIC{dimer}:-1.95649486959;TEF:-1.96683575546;PAX1,9:-1.9704119109;TEAD1:-2.02240065551;CRX:-2.02753245573;TP53:-2.02902096338;UFEwm:-2.05050614285;NKX2-2,8:-2.05537015804;GFI1B:-2.05747316473;HOX{A6,A7,B6,B7}:-2.11302740137;YY1:-2.15884479243;ALX1:-2.18867786221;POU3F1..4:-2.22491979917;GFI1:-2.24889816681;ZNF143:-2.28819798694;NKX3-2:-2.343653296;LHX3,4:-2.34956176133;CDC5L:-2.35226568241;NKX2-3_NKX2-5:-2.40800299149;SOX17:-2.60046815588;ONECUT1,2:-2.66350627051;ARID5B:-2.74493577673;HAND1,2:-3.03987534493;HOX{A4,D4}:-3.05340710863;POU1F1:-3.06723133827
|top_motifs=RUNX1..3:3.44021910671;ETS1,2:3.37024871142;PAX3,7:3.26353505301;NFKB1_REL_RELA:3.11810917673;SPI1:3.05998085384;ATF5_CREB3:3.04664930938;SPIB:2.95990958733;PAX2:2.930717661;DMAP1_NCOR{1,2}_SMARC:2.76845300942;ATF4:2.72940166107;CREB1:2.70375909855;FOX{D1,D2}:2.4827541483;FOXO1,3,4:2.37466477617;CEBPA,B_DDIT3:2.3370116932;NFIL3:2.19671549292;ELF1,2,4:2.12798683104;RXRA_VDR{dimer}:2.07982786769;FOXN1:2.07909124546;TGIF1:2.03636026601;BACH2:2.00869726209;BPTF:1.89107450028;FOS_FOS{B,L1}_JUN{B,D}:1.89089071045;JUN:1.86043128363;PITX1..3:1.85145196116;MAFB:1.81495267096;HMX1:1.80378511757;IRF1,2:1.78766222754;HIF1A:1.76698237528;RFX2..5_RFXANK_RFXAP:1.71457014925;NANOG{mouse}:1.70170748058;HLF:1.66803680778;FOXP1:1.61228118854;FOSL2:1.58298241647;NFATC1..3:1.56270948612;FOX{F1,F2,J1}:1.54167789009;NFE2:1.49534495746;FOXP3:1.45935031757;RORA:1.42021104915;T:1.41120382529;IRF7:1.34316249957;EP300:1.30093120498;ATF2:1.26564207501;ATF6:1.18659730415;STAT2,4,6:0.989994086398;SREBF1,2:0.955362139809;NFE2L1:0.933296742471;HMGA1,2:0.928948727679;NKX2-1,4:0.819216367352;NFE2L2:0.722428565332;IKZF2:0.675054493104;TLX2:0.642830020691;SMAD1..7,9:0.476961605262;ZBTB16:0.347738961105;TOPORS:0.248992048781;CDX1,2,4:0.238685993885;BREu{core}:0.210462292733;PAX8:0.209614417507;NKX3-1:0.164981558513;POU2F1..3:0.155520687925;EGR1..3:0.151919284108;SPZ1:0.123830394637;GATA4:0.0866364301964;GLI1..3:0.0801294148501;RBPJ:0.0426300311917;HOXA9_MEIS1:0.0219330748046;FOXD3:0.00574397006742;PAX6:0.0037326474389;MYFfamily:-0.0813955772401;RFX1:-0.102386293584;HBP1_HMGB_SSRP1_UBTF:-0.11538235627;NR5A1,2:-0.132965745809;SOX2:-0.201801579293;PPARG:-0.202471230278;RXR{A,B,G}:-0.245528056268;AHR_ARNT_ARNT2:-0.248496156775;TBX4,5:-0.257996236501;MYB:-0.258172755068;FOXL1:-0.288301315419;HES1:-0.305139230577;ALX4:-0.306208226372;NKX6-1,2:-0.31474751438;MEF2{A,B,C,D}:-0.32229118406;XBP1:-0.327846942146;TFAP4:-0.329311234494;POU5F1:-0.331549210037;GATA6:-0.342688677694;HSF1,2:-0.406853670828;TAL1_TCF{3,4,12}:-0.478274097956;FOX{I1,J2}:-0.496082597172;ZEB1:-0.506366364427;AIRE:-0.515064609949;NANOG:-0.525825587693;STAT1,3:-0.55791815107;MZF1:-0.560877943856;TFCP2:-0.57030029231;SRF:-0.579391649558;ESR1:-0.608234958105;OCT4_SOX2{dimer}:-0.610167634714;PDX1:-0.62005680097;NR1H4:-0.630267154188;ESRRA:-0.643644761662;PATZ1:-0.668067139525;MTE{core}:-0.669314892067;NR6A1:-0.772924333338;GCM1,2:-0.781225850816;STAT5{A,B}:-0.7888336054;E2F1..5:-0.792628801286;ZFP161:-0.797646449177;HNF4A_NR2F1,2:-0.800706599133;PAX5:-0.81560851037;ZNF384:-0.853100983418;ZNF238:-0.862323210048;NHLH1,2:-0.864484068197;RREB1:-0.868752857633;MED-1{core}:-0.87961744248;TFAP2{A,C}:-0.889949383417;SOX5:-0.903879385985;SNAI1..3:-0.909037440384;MTF1:-0.914802627101;SP1:-0.950223774507;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01668211947;PRDM1:-1.042597941;EN1,2:-1.04423520655;TFAP2B:-1.05441213327;PAX4:-1.06494192643;MYOD1:-1.08404246368;HOX{A5,B5}:-1.09771091982;REST:-1.10546857186;LEF1_TCF7_TCF7L1,2:-1.1161617214;DBP:-1.1315719251;HNF1A:-1.18683376928;ZNF148:-1.19849867765;ZNF423:-1.20989616917;NFIX:-1.25199117346;FOXA2:-1.28509088374;HIC1:-1.28612608858;PRRX1,2:-1.30164562514;NFY{A,B,C}:-1.31874463508;TFDP1:-1.32374275746;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.33284470934;MAZ:-1.34970352374;ELK1,4_GABP{A,B1}:-1.35015883587;FOXQ1:-1.35429335117;LMO2:-1.36108620747;VSX1,2:-1.42945358161;TBP:-1.43865056955;FOXM1:-1.44099169907;SOX{8,9,10}:-1.50595502912;EVI1:-1.52580460323;ZBTB6:-1.54837690025;IKZF1:-1.56236279998;AR:-1.58325868587;CUX2:-1.63953636732;NRF1:-1.66976596251;XCPE1{core}:-1.70902821802;EBF1:-1.71408692635;POU6F1:-1.77476427621;bHLH_family:-1.77765571696;GTF2I:-1.79393578629;ADNP_IRX_SIX_ZHX:-1.80085269705;PBX1:-1.81182191728;NR3C1:-1.81990220457;GZF1:-1.85206692129;GTF2A1,2:-1.87352901398;ZIC1..3:-1.91993986617;MYBL2:-1.94971503699;KLF4:-1.9498791639;TLX1..3_NFIC{dimer}:-1.95649486959;TEF:-1.96683575546;PAX1,9:-1.9704119109;TEAD1:-2.02240065551;CRX:-2.02753245573;TP53:-2.02902096338;UFEwm:-2.05050614285;NKX2-2,8:-2.05537015804;GFI1B:-2.05747316473;HOX{A6,A7,B6,B7}:-2.11302740137;YY1:-2.15884479243;ALX1:-2.18867786221;POU3F1..4:-2.22491979917;GFI1:-2.24889816681;ZNF143:-2.28819798694;NKX3-2:-2.343653296;LHX3,4:-2.34956176133;CDC5L:-2.35226568241;NKX2-3_NKX2-5:-2.40800299149;SOX17:-2.60046815588;ONECUT1,2:-2.66350627051;ARID5B:-2.74493577673;HAND1,2:-3.03987534493;HOX{A4,D4}:-3.05340710863;POU1F1:-3.06723133827
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11312-117C7;search_select_hide=table117:FF:11312-117C7
}}
}}

Latest revision as of 16:32, 3 June 2020

Name:Peripheral Blood Mononuclear Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11958
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage65 years old adult
sexmale
age65
cell typemononuclear cell
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberPBMC722
catalog number3H100-10-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004994
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11958 CAGE DRX008402 DRR009274
Accession ID Hg19

Library idBAMCTSS
CNhs11958 DRZ000699 DRZ002084
Accession ID Hg38

Library idBAMCTSS
CNhs11958 DRZ012049 DRZ013434
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004994
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10005.CGTACG sRNA-Seq DRX037067 DRR041433
Accession ID Hg19

Library idBAMCTSS
SRhi10005.CGTACG DRZ007075


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.169
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.156
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0776
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.247
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.292
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.514
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.555
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.271
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.4
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.475
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.528
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40.156
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.217
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.692
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.481
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.27
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.499
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0965
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.528
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.435
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.469
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.254
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.627
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.156
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.435
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.411
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0848
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.435
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.0848
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.156
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.027
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.789
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.787
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.62
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.613
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.528
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0295
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.58
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.307
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.638
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.609
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.7
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.528
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.729
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.156
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.648
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.683
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.0848
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.469
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0.0848
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.156
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.806
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.435
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.128
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.0848
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0676
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.58
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.318
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.361
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.318
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.361
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11958

Jaspar motifP-value
MA0002.29.79905e-12
MA0003.10.533
MA0004.10.875
MA0006.10.652
MA0007.10.988
MA0009.10.0943
MA0014.10.871
MA0017.10.639
MA0018.21.79131e-5
MA0019.10.231
MA0024.10.03
MA0025.14.4327e-4
MA0027.10.781
MA0028.10.408
MA0029.10.201
MA0030.10.0979
MA0031.10.0456
MA0035.20.538
MA0038.10.106
MA0039.20.675
MA0040.10.494
MA0041.10.4
MA0042.10.801
MA0043.11.17252e-10
MA0046.10.00626
MA0047.20.67
MA0048.10.848
MA0050.13.15319e-7
MA0051.10.00776
MA0052.10.286
MA0055.10.644
MA0057.10.352
MA0058.10.827
MA0059.10.814
MA0060.14.56945e-8
MA0061.11.54218e-18
MA0062.20.00154
MA0065.20.231
MA0066.10.092
MA0067.15.59294e-5
MA0068.10.0684
MA0069.10.806
MA0070.10.00841
MA0071.10.296
MA0072.10.586
MA0073.10.218
MA0074.10.207
MA0076.10.661
MA0077.10.136
MA0078.10.815
MA0079.20.542
MA0080.21.76231e-15
MA0081.11.56452e-4
MA0083.10.289
MA0084.10.491
MA0087.10.752
MA0088.10.558
MA0090.10.0144
MA0091.10.63
MA0092.10.927
MA0093.10.951
MA0099.24.04566e-20
MA0100.10.522
MA0101.11.12031e-16
MA0102.21.84424e-10
MA0103.10.28
MA0104.20.538
MA0105.13.24724e-18
MA0106.10.135
MA0107.12.20805e-19
MA0108.20.00272
MA0111.10.358
MA0112.20.01
MA0113.10.473
MA0114.10.925
MA0115.10.181
MA0116.17.56885e-4
MA0117.10.0178
MA0119.10.764
MA0122.10.782
MA0124.10.558
MA0125.10.0266
MA0131.10.894
MA0135.10.871
MA0136.12.77941e-19
MA0137.20.919
MA0138.20.0911
MA0139.10.762
MA0140.10.441
MA0141.10.376
MA0142.10.483
MA0143.10.487
MA0144.10.35
MA0145.10.959
MA0146.10.106
MA0147.10.633
MA0148.10.754
MA0149.10.624
MA0150.15.00889e-10
MA0152.10.0696
MA0153.10.00168
MA0154.10.00231
MA0155.10.987
MA0156.19.93405e-16
MA0157.10.0557
MA0159.10.0473
MA0160.10.121
MA0162.10.978
MA0163.17.29321e-7
MA0164.10.797
MA0258.10.0263
MA0259.10.854



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11958

Novel motifP-value
10.281
100.0134
1000.992
1010.635
1020.932
1030.721
1040.574
1050.108
1060.00229
1070.836
1080.668
1090.251
110.254
1100.557
1110.11
1120.567
1130.12
1140.133
1150.28
1160.784
1170.00966
1180.153
1190.677
120.295
1200.602
1210.669
1220.51
1234.80821e-4
1240.929
1250.427
1260.328
1270.793
1280.0893
1290.823
130.272
1300.228
1310.694
1320.0918
1330.769
1340.839
1350.533
1360.999
1370.00179
1380.178
1390.0229
140.32
1400.499
1410.368
1420.758
1430.0105
1440.59
1450.655
1460.607
1470.196
1480.0648
1490.818
150.116
1500.768
1510.15
1520.382
1530.887
1540.357
1550.314
1560.829
1570.808
1580.0673
1590.0421
160.823
1600.965
1610.58
1620.0933
1630.624
1640.0555
1650.273
1660.777
1670.276
1680.155
1690.109
170.452
180.331
190.995
20.612
200.378
210.768
220.617
230.119
240.814
250.192
260.185
270.972
280.388
290.0907
30.233
300.191
310.969
320.102
330.253
340.815
350.107
360.124
370.127
380.585
390.988
40.832
400.37
410.0135
420.432
430.0459
440.605
450.888
460.306
470.647
480.577
490.0823
50.216
500.792
510.505
520.567
530.138
540.553
550.911
560.803
570.951
580.107
590.466
60.927
600.095
610.254
620.0695
630.78
640.397
650.363
660.0396
670.714
680.386
690.592
70.284
700.0681
710.0485
720.301
730.234
740.183
750.0754
760.0815
770.611
780.264
790.695
80.946
800.0364
810.374
820.129
830.419
840.0907
850.0698
860.0236
870.443
880.785
890.679
90.457
900.134
910.227
920.316
930.866
940.0846
950.189
960.476
970.987
980.136
990.00342



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11958


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000226 (single nucleate cell)
0000080 (circulating cell)
0000842 (mononuclear cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000178 (blood)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000135 (human peripheral blood mononuclear cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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