FFCP PHASE1:Hg19::chr12:53614115..53614154,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5916 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9866 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc001scd.2,uc010sob.1,uc010sod.1_5end | |||
|cluster_id=chr12:53614115..53614154,- | |||
|description=CAGE_peak_1_at_RARG_5end | |||
|id=chr12:53614115..53614154,- | |||
|ontology_enrichment_celltype=CL:0000055!7.92e-30!180;CL:0000057!9.98e-18!75;CL:0002371!2.49e-16!591;CL:0000723!4.49e-14!436;CL:0000048!4.57e-14!430;CL:0000680!6.68e-14!57;CL:0000056!6.68e-14!57;CL:0000355!6.68e-14!57;CL:0000034!3.01e-13!444;CL:0000183!7.57e-13!59;CL:0000187!1.44e-12!54;CL:0000144!2.86e-12!625;CL:0000192!8.96e-11!42;CL:0000514!8.96e-11!42;CL:0002620!3.10e-10!23;CL:0000393!4.18e-10!60;CL:0000211!4.18e-10!60;CL:0000359!5.76e-09!32;CL:0002320!1.34e-07!365;CL:0000548!3.22e-07!679;CL:0000004!3.22e-07!679;CL:0000255!3.22e-07!679 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.82e-10;23!CL:0000192;9.65e-09;43!CL:0000359;1.12e-08;32!CL:0000057;1.36e-07;73!CL:0000187;2.44e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.29e-17,76;CL:0000680,1.84e-14,58;CL:0000056,1.84e-14,58;CL:0000355,1.84e-14,58;CL:0000723,7.11e-14,433;CL:0000048,9.37e-14,427;CL:0000187,4.22e-13,55;CL:0000034,4.71e-13,441;CL:0000192,2.78e-11,43;CL:0000514,2.78e-11,43;CL:0000393,1.17e-10,61;CL:0000211,1.17e-10,61;CL:0002620,2.31e-10,23;CL:0000359,4.48e-09,32;CL:0002320,4.47e-07,361;CL:0000222,7.89e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000514;9.65e-09;43!CL:0000355;2.90e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!5.39e-18!83;UBERON:0002329!5.39e-18!83;UBERON:0003077!5.39e-18!83;UBERON:0003059!5.39e-18!83;UBERON:0007282!5.39e-18!83;UBERON:0009618!5.39e-18!83;UBERON:0007285!5.39e-18!83;UBERON:0004290!3.10e-16!70;UBERON:0003102!5.35e-16!95;UBERON:0000486!3.27e-14!82;UBERON:0001134!6.69e-13!61;UBERON:0002036!6.69e-13!61;UBERON:0003082!6.69e-13!61;UBERON:0002204!9.07e-13!167;UBERON:0002385!2.37e-12!63;UBERON:0001015!2.37e-12!63;UBERON:0000383!2.37e-12!63;UBERON:0002097!3.74e-11!40;UBERON:0002199!5.73e-11!45;UBERON:0002416!5.73e-11!45;UBERON:0005256!7.32e-10!143;UBERON:0000926!1.88e-08!448;UBERON:0004120!1.88e-08!448;UBERON:0006603!1.88e-08!448;UBERON:0003104!1.27e-07!238;UBERON:0009142!1.27e-07!238;UBERON:0002384!1.49e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.40e-09;41!UBERON:0003102;1.22e-08;50!UBERON:0002199;5.84e-08;46!UBERON:0002416;5.84e-08;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,5.96e-17,71;UBERON:0003059,5.96e-17,71;UBERON:0007282,5.96e-17,71;UBERON:0004290,5.96e-17,71;UBERON:0009618,5.96e-17,71;UBERON:0007503,7.03e-17,78;UBERON:0007524,1.08e-16,73;UBERON:0003102,3.06e-16,99;UBERON:0003077,3.50e-16,72;UBERON:0007285,3.50e-16,72;UBERON:0000486,1.20e-14,83;UBERON:0001134,1.52e-13,62;UBERON:0002036,1.52e-13,62;UBERON:0003082,1.52e-13,62;UBERON:0002204,3.34e-13,167;UBERON:0002385,5.61e-13,64;UBERON:0001015,5.61e-13,64;UBERON:0000383,5.61e-13,64;UBERON:0002097,4.12e-12,41;UBERON:0002199,5.26e-12,46;UBERON:0002416,5.26e-12,46;UBERON:0005256,1.43e-09,122;UBERON:0000926,2.53e-09,315;UBERON:0004120,2.53e-09,315;UBERON:0006603,2.53e-09,315;UBERON:0000490,3.93e-08,148;UBERON:0003104,7.15e-08,160;UBERON:0009142,7.15e-08,160;UBERON:0002384,4.86e-07,371 | |||
|phase1_expression=5.81370813665781,5.78071414505655,9.58489947852604,6.00439790118782,4.91657203870017,6.10636966870258,0,30.9542737979147,3.3954131665979,9.09215565055583,19.538432703228,0.873765488520689,1.31883489114227,11.7578035312044,8.28493439319789,4.70627602516243,4.82155622419182,3.65155045193687,4.87932798790507,6.03293184576261,7.54802557603736,1.88072832886853,0.572471974262113,1.36874425072884,1.12988375635323,3.36218985290986,3.53032534634767,2.91229890860613,8.26064981382698,7.67658796194425,3.71558695958582,16.5495820406207,14.1566781825778,15.1599144168383,0,0,0,4.9859586767869,5.61524452916397,4.55722828503289,1.79132379391939,1.6194683300949,0.77272670290256,23.2637182047304,7.17964293008738,10.6736986922639,18.1294648786434,14.3908760807639,16.4144376574405,18.9876978932619,6.91633907628572,12.7700404139836,13.4450815487281,15.4916324060118,8.12558919566051,29.5540473081889,13.6453075028923,17.5284317867166,27.8536342057521,29.2045414639245,21.7374622771674,5.93732340336089,2.59302754908121,2.13112375266347,8.9964863974861,6.80862269629368,6.22822248995575,28.6423478392687,8.86520961314342,17.1579187317042,9.08099253950053,10.3117738076518,8.54448446090388,4.43636101255078,1.06302149982522,1.88692780957538,4.4931452458598,3.45406853535464,3.37523732063868,0.570025487482497,0.59675003159727,0.182664153764634,0,2.18455444504853,1.77901850772711,1.28019066769952,1.20118796110804,1.14950487990897,0.661044872784862,0,0,1.76171156811282,0.382273228125229,0,0.560508562981536,0.263384084775077,3.73748563216283,4.32311839024081,5.75684197198626,13.8764791174263,6.19252306603822,0.946895611469467,0,15.9316953345798,2.3568472597987,3.32300841875432,1.35401931882508,14.8585930881783,11.705341280389,22.1991171214963,21.5553013872962,25.2128684589496,5.48660283699624,3.74557159325598,3.1360657141493,20.9622283990497,7.2811893784365,3.4362744548263,2.78321661221453,8.28270077242652,3.25541726928209,1.90090408889675,9.48623250189969,6.39933055772092,8.74515085866421,9.23431282971666,7.39015197228942,11.0883708773603,6.15112450302067,6.37227377084316,29.2568239576754,17.4382223522945,6.52099065402005,78.0708569150663,65.6752662933015,59.2422262549769,29.4255800408907,48.6634870302636,1.60709189178915,1.55210578223795,2.72287835648691,3.79839318943367,52.4585215141261,70.4490441290416,1.62273696827342,2.78607579678828,0.531831842075461,0.953962497221368,0,0.371457501329565,1.19257444420023,6.02164216574287,1.38856200643038,2.26123176769604,1.67799774483962,3.85165258716094,1.46296476575767,3.6178346283706,2.49036383880697,1.00416183829401,4.02829317109147,20.5273468543998,1.46437234528902,1.10298924103761,1.62028389576352,3.12549048994279,2.2452937262617,2.0270066486998,3.06633274931766,2.84779697870439,3.29763139074733,1.31780417436063,3.87780264148325,64.9780137692376,11.4303548889923,7.85109172320394,5.95841313659485,11.1866282092037,20.2160977853064,5.04609840128076,14.9448594021587,4.44001587150888,2.8008993185979,4.17603083416033,5.06731899651722,3.48122083583342,1.15235184896,15.9338573646982,33.088968144014,34.228309292667,42.8917713183669,6.92863541998213,7.28428249656592,9.41020404905065,31.6438965445085,14.1259464908533,31.4110374774327,45.144108576718,34.1228362404408,33.675970391707,31.6191982399145,15.8235947116822,13.5128001461721,19.1174239684086,37.7520753957521,33.4071697420931,37.7097527855558,5.78504134116107,33.0076929667506,32.0336083227851,23.3125091275518,23.107014398499,38.026383288984,42.7683296475744,68.6771199863566,33.586490116012,47.8415695341485,37.6126323623731,31.2049156397395,48.9787552161,29.8208057713956,35.9684990672676,38.3206938621702,5.41130388857231,3.81844568827169,3.44165514466805,4.02513230227665,4.24095258628753,4.76395165765025,2.48786532036889,6.05570042101508,4.01475094983413,81.3537568115043,39.8809381679589,87.0250004520627,36.2206983864944,28.1532997851138,4.61396520155391,5.22612539242115,5.54325368732009,6.06616850028167,3.05031221729369,6.40630671599961,3.50561401216427,3.13954344200554,3.46272441251751,10.3341763647451,22.4386838085513,14.405090396599,8.82052268313252,0,0.982827216677626,2.36315962672562,0,0,7.3774158428366,6.91426798074341,22.4803506515239,8.74602059981188,8.70331384490178,6.51616610620649,22.8785652761507,11.5465073620219,1.507095264676,5.51820862908362,2.88732895522148,0,0.761016608938393,0.790204397959275,0,0.738651018262192,4.21207677250628,1.18904929830983,4.68669169933885,1.6798212819886,2.83550194484773,4.83616022595381,6.97521452433509,11.8848630541215,0.985326475791887,6.4275356829655,1.03664057770386,0.288239906833923,1.00993946741104,5.90530416917172,48.5125300459013,31.6487107467127,23.9501424431787,10.488404255739,8.10926256178577,14.0054951988983,5.94294747030412,13.0788020649984,4.6936502925408,6.59285750364667,168.098529550385,12.67954128834,14.0947201789981,13.5209667984776,50.9270601039041,9.92943924162948,38.6312159573344,6.29103172095849,29.3015666911379,16.4648067356154,9.12061316022458,3.19852753868291,3.16780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| |||
|short_description=p1@RARG | |||
}} |
Latest revision as of 02:12, 19 September 2015
Short description: | p1@RARG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RARG_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc001scd.2, uc010sob.1, uc010sod.1_5end |
EntrezGene: | RARG |
HGNC: | 9866 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.29e-17 | 76 |
muscle precursor cell | 1.84e-14 | 58 |
myoblast | 1.84e-14 | 58 |
multi-potent skeletal muscle stem cell | 1.84e-14 | 58 |
somatic stem cell | 7.11e-14 | 433 |
multi fate stem cell | 9.37e-14 | 427 |
muscle cell | 4.22e-13 | 55 |
stem cell | 4.71e-13 | 441 |
smooth muscle cell | 2.78e-11 | 43 |
smooth muscle myoblast | 2.78e-11 | 43 |
electrically responsive cell | 1.17e-10 | 61 |
electrically active cell | 1.17e-10 | 61 |
skin fibroblast | 2.31e-10 | 23 |
vascular associated smooth muscle cell | 4.48e-09 | 32 |
connective tissue cell | 4.47e-07 | 361 |
mesodermal cell | 7.89e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
somite | 5.96e-17 | 71 |
presomitic mesoderm | 5.96e-17 | 71 |
presumptive segmental plate | 5.96e-17 | 71 |
dermomyotome | 5.96e-17 | 71 |
trunk paraxial mesoderm | 5.96e-17 | 71 |
epithelial vesicle | 7.03e-17 | 78 |
dense mesenchyme tissue | 1.08e-16 | 73 |
surface structure | 3.06e-16 | 99 |
paraxial mesoderm | 3.50e-16 | 72 |
presumptive paraxial mesoderm | 3.50e-16 | 72 |
multilaminar epithelium | 1.20e-14 | 83 |
skeletal muscle tissue | 1.52e-13 | 62 |
striated muscle tissue | 1.52e-13 | 62 |
myotome | 1.52e-13 | 62 |
musculoskeletal system | 3.34e-13 | 167 |
muscle tissue | 5.61e-13 | 64 |
musculature | 5.61e-13 | 64 |
musculature of body | 5.61e-13 | 64 |
skin of body | 4.12e-12 | 41 |
integument | 5.26e-12 | 46 |
integumental system | 5.26e-12 | 46 |
trunk mesenchyme | 1.43e-09 | 122 |
mesoderm | 2.53e-09 | 315 |
mesoderm-derived structure | 2.53e-09 | 315 |
presumptive mesoderm | 2.53e-09 | 315 |
unilaminar epithelium | 3.93e-08 | 148 |
mesenchyme | 7.15e-08 | 160 |
entire embryonic mesenchyme | 7.15e-08 | 160 |
connective tissue | 4.86e-07 | 371 |