FFCP PHASE1:Hg19::chr15:22466523..22466550,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-433bp_to_uc001yui.1_5end | |||
|cluster_id=chr15:22466523..22466550,- | |||
|coexpression_cluster_id=C496 | |||
|description=CAGE_peak_1_at_uc001yui.1_5end | |||
|id=chr15:22466523..22466550,- | |||
|ontology_enrichment_celltype=CL:0000838!4.14e-38!52;CL:0000542!3.77e-37!53;CL:0000051!3.77e-37!53;CL:0000791!5.97e-29!18;CL:0000789!5.97e-29!18;CL:0002420!5.97e-29!18;CL:0002419!5.97e-29!18;CL:0000790!5.97e-29!18;CL:0000084!1.85e-26!25;CL:0000827!1.85e-26!25;CL:0002087!8.31e-20!119;CL:0000738!1.35e-19!140;CL:0000625!8.52e-18!11;CL:0002031!1.33e-15!124;CL:0000037!7.04e-14!172;CL:0000566!7.04e-14!172;CL:0000236!1.48e-12!14;CL:0000988!2.55e-12!182;CL:0002032!4.59e-12!165;CL:0000837!4.59e-12!165;CL:0000624!1.89e-11!6;CL:0000945!3.32e-10!24;CL:0000826!3.32e-10!24 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.76e-38;18!CL:0000789;1.76e-38;18!CL:0002419;1.76e-38;18!CL:0000084;2.08e-30;25!CL:0000542;8.42e-23;53!CL:0000625;3.89e-20;11!CL:0000624;4.42e-18;6!CL:0000236;1.85e-12;13!CL:0000898;6.31e-10;3!CL:0000945;1.41e-09;24!CL:0000623;1.66e-09;3!CL:0000767;1.78e-09;3!CL:0000815;1.36e-07;2!CL:0000792;1.36e-07;2!CL:0002677;1.36e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.08e-42,52;CL:0000542,9.90e-42,53;CL:0000051,9.90e-42,53;CL:0000791,2.19e-38,18;CL:0000789,2.19e-38,18;CL:0002420,2.19e-38,18;CL:0002419,2.19e-38,18;CL:0000790,2.19e-38,18;CL:0000084,2.45e-30,25;CL:0000827,2.45e-30,25;CL:0000625,5.89e-20,11;CL:0000624,2.72e-18,6;CL:0000738,5.21e-18,136;CL:0002087,3.46e-17,115;CL:0002031,3.88e-16,120;CL:0000236,1.24e-14,14;CL:0000037,6.87e-13,168;CL:0002032,7.47e-13,161;CL:0000837,7.47e-13,161;CL:0000988,8.56e-12,177;CL:0000898,4.61e-10,3;CL:0000623,9.76e-10,3;CL:0000825,9.76e-10,3;CL:0000945,1.02e-09,24;CL:0000826,1.02e-09,24;CL:0000767,2.29e-09,3;CL:0000815,1.34e-07,2;CL:0000792,1.34e-07,2;CL:0002677,1.34e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.76e-38;18!CL:0000051;8.42e-23;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.04e-10!115;UBERON:0000178!4.09e-09!15;UBERON:0000179!4.09e-09!15;UBERON:0000463!4.09e-09!15;UBERON:0004177!1.10e-08!7;UBERON:0002370!5.64e-08!4;UBERON:0005058!5.64e-08!4;UBERON:0009113!5.64e-08!4;UBERON:0003295!5.64e-08!4;UBERON:0005562!5.64e-08!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.04e-07;2!UBERON:0005058;1.04e-07;2!UBERON:0009113;1.04e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.03e-12,4;UBERON:0005058,2.03e-12,4;UBERON:0009113,2.03e-12,4;UBERON:0003295,2.03e-12,4;UBERON:0005562,2.03e-12,4;UBERON:0003351,2.82e-08,6;UBERON:0001042,2.39e-07,10;UBERON:0009145,2.39e-07,10;UBERON:0004177,4.35e-07,7;UBERON:0005057,4.35e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,2.36018566109342,5.75744097145819,1.23852898652861,0,0,0,0,1.84820002233648,0,1.66198622559563,0.601633342410425,1.30206522429511,0.447830948479849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,1.75996244461323,2.18455444504853,1.77901850772711,0.426730222566507,0,3.4485146397269,1.98313461835459,1.90810750907073,0,1.76171156811282,1.52909291250092,0,1.12101712596307,0.263384084775077,3.34406609193516,4.32311839024081,2.67281948699362,9.1952572464873,7.49621213257258,6.62826928028627,1.94826728407911,16.4887476190057,13.8464776513173,7.53215241584312,14.8942125070759,9.60684897942564,15.997299749865,6.9063919933544,13.8175008892924,7.24507714337631,0.741432815810302,1.87278579662799,2.09071047609954,5.89208582027344,1.91610246800961,4.46715679127419,3.54227568827304,0.95569624297229,1.30216690771284,0.950452044448374,2.10805166708882,3.32765189001488,3.74792179657038,2.36777252044017,2.46338399076314,2.01606743224732,3.20928234940209,1.15859523106239,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0.982827216677626,0,1.32438929824395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2329365839288,1.97030760201927,6.03757209606648,2.95188983443421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.431428401637234,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03558180854457,0,0,0,0,2.02979043692868,1.52927441428475,1.13929437434833,2.38231775457789,0.411362273086194,0,1.08006287447623,0,0,0,0,0,0.144269212976445,0.142283686696828,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0.19924798825107,3.03912307084262,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,18.3947936752326,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,2.4441205797345,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,1.70762395791482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236417121897595,0.0524545881349981,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.213574825135389,0,1.24271716604159,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,0,1.03710588800201,0,0,0,0,0,0.313972371402056,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54674721756217,0.218559560503957,0,0,0,0,0,0,0,0.657887425858975,0.322289439867886,0,0,0,0,0,0,0.143339583151451,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0.476128862927481,30.2276098032509,9.62158071585798,0,0.12729431655633,0.202117188958219,0.217716747896961,0,2.55937801455433,0.78894425931944,0,0,0,0,0,0,0,0,0,3.01910690386539,0.320568492303233 | |||
|short_description=p1@uc001yui.1 | |||
}} |
Latest revision as of 00:22, 25 July 2015
Short description: | p1@uc001yui.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc001yui.1_5end |
Coexpression cluster: | C496_thymus_CD4_CD8_hairy_vein_chronic_Peripheral |
Association with transcript: | -433bp_to_uc001yui.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.08e-42 | 52 |
lymphocyte | 9.90e-42 | 53 |
common lymphoid progenitor | 9.90e-42 | 53 |
mature alpha-beta T cell | 2.19e-38 | 18 |
alpha-beta T cell | 2.19e-38 | 18 |
immature T cell | 2.19e-38 | 18 |
mature T cell | 2.19e-38 | 18 |
immature alpha-beta T cell | 2.19e-38 | 18 |
T cell | 2.45e-30 | 25 |
pro-T cell | 2.45e-30 | 25 |
CD8-positive, alpha-beta T cell | 5.89e-20 | 11 |
CD4-positive, alpha-beta T cell | 2.72e-18 | 6 |
leukocyte | 5.21e-18 | 136 |
nongranular leukocyte | 3.46e-17 | 115 |
hematopoietic lineage restricted progenitor cell | 3.88e-16 | 120 |
B cell | 1.24e-14 | 14 |
hematopoietic stem cell | 6.87e-13 | 168 |
hematopoietic oligopotent progenitor cell | 7.47e-13 | 161 |
hematopoietic multipotent progenitor cell | 7.47e-13 | 161 |
hematopoietic cell | 8.56e-12 | 177 |
naive T cell | 4.61e-10 | 3 |
natural killer cell | 9.76e-10 | 3 |
pro-NK cell | 9.76e-10 | 3 |
lymphocyte of B lineage | 1.02e-09 | 24 |
pro-B cell | 1.02e-09 | 24 |
basophil | 2.29e-09 | 3 |
regulatory T cell | 1.34e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.34e-07 | 2 |
naive regulatory T cell | 1.34e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.03e-12 | 4 |
hemolymphoid system gland | 2.03e-12 | 4 |
thymic region | 2.03e-12 | 4 |
pharyngeal gland | 2.03e-12 | 4 |
thymus primordium | 2.03e-12 | 4 |
pharyngeal epithelium | 2.82e-08 | 6 |
chordate pharynx | 2.39e-07 | 10 |
pharyngeal region of foregut | 2.39e-07 | 10 |
hemopoietic organ | 4.35e-07 | 7 |
immune organ | 4.35e-07 | 7 |