FFCP PHASE1:Hg19::chr8:68864231..68864243,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:68864231..68864243,+
|short_description=p8@PREX2
|description=CAGE_peak_8_at_PREX2_5end
|association_with_transcript=-104bp_to_uc003xxt.2_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=80243 | |EntrezGene=80243 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22950 | |HGNC=22950 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-104bp_to_uc003xxt.2_5end | |||
|cluster_id=chr8:68864231..68864243,+ | |||
|description=CAGE_peak_8_at_PREX2_5end | |||
|id=chr8:68864231..68864243,+ | |||
|ontology_enrichment_celltype=CL:0002139!3.20e-15!24;CL:0000071!5.15e-11!18;CL:0002546!5.15e-11!18;CL:0000115!1.11e-09!35 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.47e-16;24!CL:0002618;1.08e-13;3!CL:0002138;9.27e-12;6!CL:0000115;1.20e-10;36!CL:0000047;9.92e-10;2!CL:0000071;3.68e-08;18!CL:0002543;4.75e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,3.62e-16,24;CL:0002618,5.47e-14,3;CL:0000115,3.71e-12,36;CL:0005020,1.21e-11,6;CL:0002138,1.21e-11,6;CL:0005022,1.21e-11,6;CL:0002078,2.83e-09,45;CL:0000071,3.35e-08,18;CL:0002546,3.35e-08,18;CL:0000213,5.48e-08,58;CL:0000215,5.48e-08,58;CL:0002543,3.43e-07,6 | |||
|ontology_enrichment_development_v019=CL:0005022;9.27e-12;6!CL:0002546;3.68e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4468;3.81e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,3.83e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.49e-45!115;UBERON:0001017!7.94e-25!82;UBERON:0005743!6.23e-24!86;UBERON:0001049!9.61e-24!57;UBERON:0005068!9.61e-24!57;UBERON:0006241!9.61e-24!57;UBERON:0007135!9.61e-24!57;UBERON:0002780!2.19e-21!41;UBERON:0001890!2.19e-21!41;UBERON:0006240!2.19e-21!41;UBERON:0000073!2.54e-21!94;UBERON:0001016!2.54e-21!94;UBERON:0002616!3.25e-21!59;UBERON:0003080!1.26e-20!42;UBERON:0000955!3.24e-20!69;UBERON:0006238!3.24e-20!69;UBERON:0003075!1.82e-18!86;UBERON:0007284!1.82e-18!86;UBERON:0001893!5.35e-17!34;UBERON:0002346!5.70e-17!90;UBERON:0002020!6.36e-17!34;UBERON:0003528!6.36e-17!34;UBERON:0002791!3.43e-16!33;UBERON:0001869!3.60e-15!32;UBERON:0004111!1.01e-13!241;UBERON:0003056!1.07e-12!61;UBERON:0000025!1.22e-11!194;UBERON:0000477!3.94e-11!286;UBERON:0001986!5.15e-11!18;UBERON:0004638!5.15e-11!18;UBERON:0004852!5.15e-11!18;UBERON:0000956!5.56e-11!25;UBERON:0000203!5.56e-11!25;UBERON:0000153!8.89e-11!129;UBERON:0007811!8.89e-11!129;UBERON:0000033!1.18e-09!123;UBERON:0004121!1.59e-09!169;UBERON:0000924!6.09e-09!173;UBERON:0006601!6.09e-09!173;UBERON:0002619!1.07e-08!22;UBERON:0000487!3.10e-08!22;UBERON:0002308!8.99e-08!9;UBERON:0000125!8.99e-08!9;UBERON:0002298!1.71e-07!8;UBERON:0000483!2.90e-07!309;UBERON:0001950!4.84e-07!20;UBERON:0000119!5.35e-07!312;UBERON:0006914!9.09e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002298;6.97e-11;6!UBERON:0002081;2.37e-09;2!UBERON:0001473;7.91e-09;8!UBERON:0004536;7.91e-09;8!UBERON:0006558;7.91e-09;8!UBERON:0002066;2.19e-08;5!UBERON:0004638;3.68e-08;18!UBERON:0001986;3.68e-08;18!UBERON:0004852;3.68e-08;18!UBERON:0004732;1.26e-07;13!UBERON:0000125;2.79e-07;9!UBERON:0002308;2.79e-07;9!UBERON:0002465;4.60e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,6.14e-11,6;UBERON:0002081,1.46e-09,2;UBERON:0010227,1.46e-09,2;UBERON:0001473,9.64e-09,8;UBERON:0004536,9.64e-09,8;UBERON:0006558,9.64e-09,8;UBERON:0002066,1.47e-08,5;UBERON:0004638,3.35e-08,18;UBERON:0001986,3.35e-08,18;UBERON:0004852,3.35e-08,18;UBERON:0000073,3.60e-08,53;UBERON:0002616,3.60e-08,53;UBERON:0004732,1.11e-07,13;UBERON:0004111,1.27e-07,240;UBERON:0001049,1.28e-07,56;UBERON:0005068,1.28e-07,56;UBERON:0006241,1.28e-07,56;UBERON:0007135,1.28e-07,56;UBERON:0007023,2.06e-07,114;UBERON:0000125,3.49e-07,9;UBERON:0002308,3.49e-07,9;UBERON:0002465,5.37e-07,10 | |||
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| ||
|short_description=p8@PREX2 | |||
}} | }} |
Latest revision as of 22:37, 18 September 2015
Short description: | p8@PREX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PREX2_5end |
Coexpression cluster: | NA |
Association with transcript: | -104bp_to_uc003xxt.2_5end |
EntrezGene: | PREX2 |
HGNC: | 22950 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 3.62e-16 | 24 |
endothelial cell of umbilical vein | 5.47e-14 | 3 |
endothelial cell | 3.71e-12 | 36 |
lymphangioblast | 1.21e-11 | 6 |
endothelial cell of lymphatic vessel | 1.21e-11 | 6 |
vascular lymphangioblast | 1.21e-11 | 6 |
meso-epithelial cell | 2.83e-09 | 45 |
blood vessel endothelial cell | 3.35e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.35e-08 | 18 |
lining cell | 5.48e-08 | 58 |
barrier cell | 5.48e-08 | 58 |
vein endothelial cell | 3.43e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
brainstem | 6.14e-11 | 6 |
cardiac atrium | 1.46e-09 | 2 |
future cardiac atrium | 1.46e-09 | 2 |
lymphatic vessel | 9.64e-09 | 8 |
lymph vasculature | 9.64e-09 | 8 |
lymphatic part of lymphoid system | 9.64e-09 | 8 |
umbilical vein | 1.47e-08 | 5 |
blood vessel endothelium | 3.35e-08 | 18 |
endothelium | 3.35e-08 | 18 |
cardiovascular system endothelium | 3.35e-08 | 18 |
regional part of nervous system | 3.60e-08 | 53 |
regional part of brain | 3.60e-08 | 53 |
segmental subdivision of nervous system | 1.11e-07 | 13 |
anatomical conduit | 1.27e-07 | 240 |
neural tube | 1.28e-07 | 56 |
neural rod | 1.28e-07 | 56 |
future spinal cord | 1.28e-07 | 56 |
neural keel | 1.28e-07 | 56 |
adult organism | 2.06e-07 | 114 |
neural nucleus | 3.49e-07 | 9 |
nucleus of brain | 3.49e-07 | 9 |
lymphoid system | 5.37e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 3.83e-10 | 2 |