FFCP PHASE1:Hg19::chr8:87756009..87756027,-: Difference between revisions
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|id=chr8:87756009..87756027,-
|short_description=p9@CNGB3
|description=CAGE_peak_9_at_CNGB3_5end
|association_with_transcript=-106bp_to_ENST00000320005,NM_019098_5e...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54714 | |EntrezGene=54714 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2153 | |HGNC=2153 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NQW8 | |UniProt=Q9NQW8 | ||
|association_with_transcript=-106bp_to_ENST00000320005,NM_019098_5end | |||
|cluster_id=chr8:87756009..87756027,- | |||
|coexpression_cluster_id=C73 | |||
|description=CAGE_peak_9_at_CNGB3_5end | |||
|id=chr8:87756009..87756027,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000306;1.03e-17;4!CL:0002222;1.03e-17;4!CL:0002224;1.03e-17;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,1.03e-17,4;CL:0002222,1.03e-17,4;CL:0002224,1.03e-17,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003296!3.62e-29!4;UBERON:0010133!3.62e-29!4;UBERON:0001905!1.29e-26!2;UBERON:0002757!1.29e-26!2;UBERON:0010134!1.29e-26!2;UBERON:0002784!1.29e-26!2;UBERON:0005408!1.29e-26!2;UBERON:0001899!1.29e-26!2;UBERON:0001894!5.75e-17!7;UBERON:0006222!5.75e-17!7;UBERON:0002426!4.53e-14!1;UBERON:0003831!4.53e-14!1;UBERON:0003898!4.53e-14!1;UBERON:0004830!4.53e-14!1;UBERON:0001774!4.53e-14!1;UBERON:0003830!4.53e-14!1;UBERON:0005175!4.53e-14!1;UBERON:0003897!4.53e-14!1;UBERON:0001103!4.53e-14!1;UBERON:0010084!4.53e-14!1;UBERON:0006834!1.61e-13!1;UBERON:0000966!4.79e-11!5;UBERON:0005388!4.79e-11!5;UBERON:0001802!4.79e-11!5;UBERON:0000970!2.41e-10!20;UBERON:0002104!7.30e-10!21;UBERON:0000020!5.05e-09!23;UBERON:0001032!1.18e-08!24;UBERON:0004456!1.18e-08!24;UBERON:0003075!1.91e-08!86;UBERON:0007284!1.91e-08!86;UBERON:0002346!4.91e-08!90;UBERON:0007023!9.80e-08!115;UBERON:0001630!1.12e-07!2;UBERON:0005090!1.12e-07!2;UBERON:0002360!1.28e-07!2;UBERON:0000094!1.28e-07!2;UBERON:0007645!1.28e-07!2;UBERON:0000007!1.45e-07!2;UBERON:0003056!5.06e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;4.61e-131;2!UBERON:0002757;4.61e-131;2!UBERON:0010134;4.61e-131;2!UBERON:0005408;4.61e-131;2!UBERON:0001899;4.61e-131;2!UBERON:0003296;2.40e-66;4!UBERON:0010133;2.40e-66;4!UBERON:0002784;2.40e-66;4!UBERON:0001894;1.49e-38;7!UBERON:0010077;1.03e-17;4!UBERON:0005389;1.03e-17;4!UBERON:0000484;1.03e-17;4!UBERON:0000965;1.03e-17;4!UBERON:0001803;1.03e-17;4!UBERON:0002368;5.41e-08;33!UBERON:0000949;5.43e-08;43!UBERON:0007625;2.63e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,4.61e-131,2;UBERON:0002757,4.61e-131,2;UBERON:0010134,4.61e-131,2;UBERON:0005408,4.61e-131,2;UBERON:0001899,4.61e-131,2;UBERON:0003296,2.40e-66,4;UBERON:0010133,2.40e-66,4;UBERON:0002784,2.40e-66,4;UBERON:0001894,1.49e-38,7;UBERON:0006222,1.49e-38,7;UBERON:0010077,1.03e-17,4;UBERON:0005389,1.03e-17,4;UBERON:0000484,1.03e-17,4;UBERON:0002546,1.03e-17,4;UBERON:0000965,1.03e-17,4;UBERON:0001803,1.03e-17,4;UBERON:0003073,1.03e-17,4;UBERON:0005426,1.03e-17,4;UBERON:0003056,1.22e-10,61;UBERON:0000076,1.47e-09,8;UBERON:0002368,1.09e-08,35;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86;UBERON:0002780,2.04e-07,41;UBERON:0001890,2.04e-07,41;UBERON:0003080,2.04e-07,41;UBERON:0006240,2.04e-07,41;UBERON:0007625,2.63e-07,11;UBERON:0000949,5.42e-07,45 | |||
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|short_description=p9@CNGB3 | |||
}} | }} |
Latest revision as of 08:47, 19 September 2015
Short description: | p9@CNGB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_CNGB3_5end |
Coexpression cluster: | C73_pineal_eye_retina_caudate_cerebellum_left_parietal |
Association with transcript: | -106bp_to_ENST00000320005, NM_019098_5end |
EntrezGene: | CNGB3 |
HGNC: | 2153 |
UniProt: | Q9NQW8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 1.03e-17 | 4 |
vertebrate lens cell | 1.03e-17 | 4 |
lens epithelial cell | 1.03e-17 | 4 |
Ontology term | p-value | n |
---|---|---|
pineal body | 4.61e-131 | 2 |
regional part of epithalamus | 4.61e-131 | 2 |
secretory circumventricular organ | 4.61e-131 | 2 |
circumventricular organ | 4.61e-131 | 2 |
epithalamus | 4.61e-131 | 2 |
gland of diencephalon | 2.40e-66 | 4 |
neuroendocrine gland | 2.40e-66 | 4 |
regional part of diencephalon | 2.40e-66 | 4 |
diencephalon | 1.49e-38 | 7 |
future diencephalon | 1.49e-38 | 7 |
cuboidal epithelium | 1.03e-17 | 4 |
transparent eye structure | 1.03e-17 | 4 |
simple cuboidal epithelium | 1.03e-17 | 4 |
cranial placode | 1.03e-17 | 4 |
lens of camera-type eye | 1.03e-17 | 4 |
epithelium of lens | 1.03e-17 | 4 |
lens placode | 1.03e-17 | 4 |
lens vesicle | 1.03e-17 | 4 |
pre-chordal neural plate | 1.22e-10 | 61 |
external ectoderm | 1.47e-09 | 8 |
endocrine gland | 1.09e-08 | 35 |
neural plate | 3.31e-08 | 82 |
presumptive neural plate | 3.31e-08 | 82 |
neurectoderm | 7.10e-08 | 86 |
regional part of forebrain | 2.04e-07 | 41 |
forebrain | 2.04e-07 | 41 |
anterior neural tube | 2.04e-07 | 41 |
future forebrain | 2.04e-07 | 41 |
pigment epithelium of eye | 2.63e-07 | 11 |
endocrine system | 5.42e-07 | 45 |