FFCP PHASE1:Hg19::chr1:153540420..153540455,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:153540420..153540455,+ | |||
|description=CAGE_peak_at_chr1:153540420..153540455,+ | |||
|id=chr1:153540420..153540455,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.76e-32!254;CL:0002076!6.86e-17!43;CL:0000223!5.73e-15!59;CL:0002368!3.98e-13!13;CL:0000063!5.74e-08!578;CL:0002202!1.00e-07!9;CL:0002632!1.00e-07!9;CL:0000076!2.71e-07!62;CL:0002328!5.97e-07!3;CL:0000068!7.05e-07!3;CL:0000069!7.05e-07!3;CL:0000307!7.05e-07!3;CL:0000377!7.05e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002328;3.44e-34;3!CL:0002202;2.90e-31;9!CL:0002632;2.90e-31;9!CL:0002368;6.92e-31;13!CL:0000307;3.17e-16;3!CL:0002577;1.77e-15;3!CL:0000349;2.51e-14;19!CL:0002553;3.08e-12;1!CL:0002537;8.87e-10;5!CL:0000082;1.25e-09;19!CL:0002545;9.53e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002328,2.75e-34,3;CL:0002202,2.90e-31,9;CL:0002632,2.90e-31,9;CL:0002368,6.25e-31,13;CL:0000068,3.69e-16,3;CL:0000069,3.69e-16,3;CL:0000307,3.69e-16,3;CL:0000377,3.69e-16,3;CL:0002577,1.65e-15,3;CL:0000349,2.24e-14,19;CL:0002553,2.75e-12,1;CL:0002537,7.77e-10,5;CL:0000082,1.16e-09,19;CL:0002076,2.45e-09,42;CL:0002545,8.52e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000377;3.17e-16;3 | |||
|ontology_enrichment_disease=DOID:305!1.50e-16!106;DOID:0050687!8.17e-13!143;DOID:1749!5.15e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:3151;3.08e-12;1!DOID:3149;3.08e-12;1!DOID:3451;9.53e-07;2!DOID:4159;9.53e-07;2!DOID:0060122;9.53e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,4.81e-12,1;DOID:3149,4.81e-12,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!3.27e-11!14;UBERON:0000158!3.27e-11!14;UBERON:0004119!1.06e-09!169;UBERON:0000925!1.06e-09!169;UBERON:0006595!1.06e-09!169;UBERON:0003124!3.87e-09!7;UBERON:0000065!3.99e-08!53;UBERON:0001004!1.38e-07!72;UBERON:0000062!4.44e-07!511;UBERON:0004815!5.97e-07!3;UBERON:0002031!5.97e-07!3;UBERON:0008947!6.45e-07!38;UBERON:0003258!6.45e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;3.44e-34;3!UBERON:0002031;3.44e-34;3!UBERON:0002185;8.34e-21;5!UBERON:0007196;9.02e-19;15!UBERON:0001558;9.02e-19;15!UBERON:0000485;4.81e-15;7!UBERON:0001987;7.52e-12;4!UBERON:0005178;1.15e-11;34!UBERON:0002224;1.15e-11;34!UBERON:0000478;2.48e-11;24!UBERON:0005181;8.21e-11;35!UBERON:0000065;1.11e-10;44!UBERON:0005631;1.78e-10;10!UBERON:0000158;1.78e-10;10!UBERON:0000072;3.30e-10;37!UBERON:0004802;1.25e-09;19!UBERON:0000115;1.25e-09;19!UBERON:0002048;2.42e-08;22!UBERON:0004807;2.42e-08;22!UBERON:0000117;2.42e-08;22!UBERON:0000171;2.42e-08;22!UBERON:0000170;2.42e-08;22!UBERON:0003126;1.84e-07;7!UBERON:0001005;1.84e-07;7!UBERON:0000305;3.14e-07;7!UBERON:0000915;3.88e-07;52!UBERON:0005800;9.53e-07;2!UBERON:0001515;9.53e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,2.75e-34,3;UBERON:0002031,2.75e-34,3;UBERON:0002185,7.30e-21,5;UBERON:0005631,1.63e-19,14;UBERON:0000158,1.63e-19,14;UBERON:0007196,9.03e-19,15;UBERON:0001558,9.03e-19,15;UBERON:0003124,1.30e-14,7;UBERON:0001987,7.12e-12,4;UBERON:0004340,7.12e-12,4;UBERON:0000485,7.29e-12,9;UBERON:0005178,1.54e-11,34;UBERON:0002224,1.54e-11,34;UBERON:0000478,2.27e-11,24;UBERON:0005181,3.38e-11,35;UBERON:0008947,2.78e-10,38;UBERON:0003258,2.78e-10,38;UBERON:0000915,6.50e-10,52;UBERON:0004802,1.16e-09,19;UBERON:0000115,1.16e-09,19;UBERON:0000065,1.40e-09,54;UBERON:0002048,2.28e-08,22;UBERON:0000117,2.28e-08,22;UBERON:0000171,2.28e-08,22;UBERON:0000170,2.28e-08,22;UBERON:0005597,2.28e-08,22;UBERON:0000118,2.28e-08,22;UBERON:0000072,3.10e-08,47;UBERON:0003126,1.96e-07,7;UBERON:0001005,1.96e-07,7;UBERON:0005153,2.07e-07,37;UBERON:0000305,2.86e-07,7;UBERON:0009569,6.05e-07,112;UBERON:0001004,8.34e-07,74;UBERON:0005800,8.52e-07,2;UBERON:0001515,8.52e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,3.614471025339,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0.502497330513487,0.521482918420201,0.65156653411535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0.367663080345869,1.62028389576352,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0.773043412653187,0.272746120590835,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0.217879444092406,0.949082476444386,0.404493924480493,0.392442930250692,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0.329250856225877,3.37205259772859,0.100528972411631,0.555530670951178,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.503946384596579,0,0.0895585227028483,0,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5156378572313,1.66435439510497,0.907170879989041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,1.56869953835371,0,0.211103257785751,0,0,0,0,0,0.501689773854853,0.254876273045038,0.831076008928724,0.223874754722178,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.330569830721956,0.192190067365106,3.95599408733211,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0.962221127255121,3.35151137767894,6.53345909167936,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,1.90995587790152,0,2.45728561679386,0,0,0,0,0,0,0.276283915531148,0,0.306806047506464,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557694977114413,0,0,0,0,0,1.5950057986596,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0.978323094660449,0.242780379534093,0,0,0,0,3.45743864653333,0.207376382794494,0,0,0,0,0.284609546029793,0.138674673013139,0.173559738335131,0.195984794828755,0.34823682632161,0,0.171986032471617,0.19351266257817,0.146178634172371,0.328461828212837,0.0969890164884194,0,0,0.137041924646751,0,0,0.195551382734803,0.0801588202515337,0,0,0.144090417154106,0,0,0.576219191952599,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0,0,0,0,0,0,0,0,0.449947783103001,0,0,1.0063040627978,0,0.0524545881349981,0,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0.295710299979268,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0.308801447160972,0,0,0,0,0.512483037175893,0,0,0.138258436151731,0,0,0,0,0.245772908753719,0.422624246717254,0.19998739585493,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,1.60114149657094,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0.471878893390961,0,0.693153996902029,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,0,0,0.335566295393377,0,0.487671699929078,0,0,0,0,0,0,0,0,0,0,0,0,0.470317296361523,0,0.235676547101626,0,0,0,0,0,0,0,0.178553938605658,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0.162806537221949,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:153540420..153540455,+ | |||
}} |
Latest revision as of 21:45, 27 July 2015
Short description: | p@chr1:153540420..153540455, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:153540420..153540455, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bronchial epithelial cell | 2.75e-34 | 3 |
epithelial cell of tracheobronchial tree | 2.90e-31 | 9 |
epithelial cell of lower respiratory tract | 2.90e-31 | 9 |
respiratory epithelial cell | 6.25e-31 | 13 |
duct epithelial cell | 3.69e-16 | 3 |
branched duct epithelial cell | 3.69e-16 | 3 |
tracheal epithelial cell | 3.69e-16 | 3 |
tracheoblast | 3.69e-16 | 3 |
placental epithelial cell | 1.65e-15 | 3 |
extraembryonic cell | 2.24e-14 | 19 |
lung fibroblast | 2.75e-12 | 1 |
amnion mesenchymal stem cell | 7.77e-10 | 5 |
epithelial cell of lung | 1.16e-09 | 19 |
endo-epithelial cell | 2.45e-09 | 42 |
thoracic aorta endothelial cell | 8.52e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 4.81e-12 | 1 |
keratoacanthoma | 4.81e-12 | 1 |