FFCP PHASE1:Hg19::chr1:154943232..154943245,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6464 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10840 | |||
|TSSclassifier=strong | |||
|UniProt=P29353 | |||
|association_with_transcript=-9bp_to_ENST00000368449,ENST00000448116,NM_001130040,NM_183001,uc001ffv.2,uc001ffw.2_5end | |||
|cluster_id=chr1:154943232..154943245,- | |||
|coexpression_cluster_id=C2529 | |||
|description=CAGE_peak_5_at_SHC1_5end | |||
|id=chr1:154943232..154943245,- | |||
|ontology_enrichment_celltype=CL:0002321!8.90e-38!248;CL:0000220!1.24e-37!246;CL:0000055!5.47e-29!180;CL:0000222!8.57e-24!119;CL:0000066!1.00e-16!254;CL:0000183!3.72e-16!59;CL:0000548!3.00e-15!679;CL:0000004!3.00e-15!679;CL:0000255!3.00e-15!679;CL:0000680!2.30e-14!57;CL:0000056!2.30e-14!57;CL:0000355!2.30e-14!57;CL:0000012!2.93e-14!682;CL:0000187!1.01e-13!54;CL:0000144!3.63e-13!625;CL:0000393!7.74e-13!60;CL:0000211!7.74e-13!60;CL:0000057!1.82e-11!75;CL:0002371!5.28e-11!591;CL:0000192!6.00e-11!42;CL:0000514!6.00e-11!42;CL:0000213!4.47e-10!57;CL:0000215!4.47e-10!57;CL:0000221!1.57e-09!71;CL:0000076!7.23e-09!62;CL:0000359!4.31e-08!32;CL:0002078!1.78e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0000187;1.24e-08;55!CL:0000192;2.82e-08;43!CL:0000359;6.17e-08;32!CL:0000393;5.50e-07;61!CL:0000211;5.50e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.48e-37,250;CL:0000222,6.35e-25,121;CL:0000066,1.22e-15,253;CL:0000680,1.33e-14,58;CL:0000056,1.33e-14,58;CL:0000355,1.33e-14,58;CL:0000187,6.04e-14,55;CL:0000393,5.81e-13,61;CL:0000211,5.81e-13,61;CL:0000057,8.93e-12,76;CL:0000192,4.17e-11,43;CL:0000514,4.17e-11,43;CL:0000213,8.03e-11,58;CL:0000215,8.03e-11,58;CL:0000221,9.61e-10,72;CL:0000076,7.59e-09,63;CL:0000359,3.10e-08,32;CL:0002078,3.84e-08,45;CL:0000115,4.31e-07,36 | |||
|ontology_enrichment_development_v019=CL:0000355;1.35e-08;58!CL:0000514;2.82e-08;43!CL:0000222;1.87e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!3.30e-22!312;UBERON:0000475!8.44e-22!365;UBERON:0000483!1.72e-21!309;UBERON:0000481!2.07e-19!347;UBERON:0005256!1.34e-18!143;UBERON:0002100!1.67e-17!216;UBERON:0000486!2.66e-17!82;UBERON:0002049!2.80e-16!79;UBERON:0007798!2.80e-16!79;UBERON:0003104!4.75e-16!238;UBERON:0009142!4.75e-16!238;UBERON:0000914!5.67e-16!83;UBERON:0002329!5.67e-16!83;UBERON:0003077!5.67e-16!83;UBERON:0003059!5.67e-16!83;UBERON:0007282!5.67e-16!83;UBERON:0009618!5.67e-16!83;UBERON:0007285!5.67e-16!83;UBERON:0003914!6.36e-14!118;UBERON:0004290!7.07e-14!70;UBERON:0000490!3.10e-13!138;UBERON:0000468!5.97e-13!659;UBERON:0000055!6.40e-13!69;UBERON:0000477!5.17e-12!286;UBERON:0001134!8.54e-12!61;UBERON:0002036!8.54e-12!61;UBERON:0003082!8.54e-12!61;UBERON:0001981!9.58e-12!60;UBERON:0007500!9.58e-12!60;UBERON:0004537!9.58e-12!60;UBERON:0006965!9.58e-12!60;UBERON:0004872!1.52e-11!84;UBERON:0002385!6.17e-11!63;UBERON:0001015!6.17e-11!63;UBERON:0000383!6.17e-11!63;UBERON:0000922!7.73e-11!612;UBERON:0000467!1.10e-10!625;UBERON:0000480!1.18e-10!626;UBERON:0002050!1.92e-10!605;UBERON:0005423!1.92e-10!605;UBERON:0000923!2.16e-10!604;UBERON:0005291!2.16e-10!604;UBERON:0006598!2.16e-10!604;UBERON:0002532!2.16e-10!604;UBERON:0001637!3.40e-10!42;UBERON:0003509!3.40e-10!42;UBERON:0004572!3.40e-10!42;UBERON:0004535!4.53e-10!110;UBERON:0005085!6.52e-10!29;UBERON:0004111!8.39e-10!241;UBERON:0003102!9.82e-10!95;UBERON:0001009!2.69e-09!113;UBERON:0004573!1.84e-08!33;UBERON:0004571!1.84e-08!33;UBERON:0001444!4.57e-08!48;UBERON:0001048!1.88e-07!168;UBERON:0000025!6.85e-07!194;UBERON:0001801!7.04e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0010371;7.21e-09;31!UBERON:0003914;3.35e-08;74!UBERON:0004573;9.31e-08;33!UBERON:0004571;9.31e-08;33!UBERON:0001637;1.02e-07;42!UBERON:0003509;1.02e-07;42!UBERON:0004572;1.02e-07;42!UBERON:0002049;1.90e-07;75!UBERON:0007798;1.90e-07;75!UBERON:0007500;3.30e-07;56!UBERON:0001981;3.30e-07;56!UBERON:0004537;3.30e-07;56!UBERON:0000055;3.63e-07;65!UBERON:0001801;5.08e-07;14!UBERON:0000483;8.41e-07;136 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,3.48e-20,309;UBERON:0000483,1.72e-19,306;UBERON:0003104,1.88e-17,160;UBERON:0009142,1.88e-17,160;UBERON:0000486,1.93e-17,83;UBERON:0007503,2.92e-17,78;UBERON:0002049,1.62e-16,78;UBERON:0007798,1.62e-16,78;UBERON:0000490,8.81e-15,148;UBERON:0005256,1.07e-14,122;UBERON:0002100,1.26e-14,199;UBERON:0003914,4.76e-14,117;UBERON:0002329,5.89e-14,71;UBERON:0003059,5.89e-14,71;UBERON:0007282,5.89e-14,71;UBERON:0004290,5.89e-14,71;UBERON:0009618,5.89e-14,71;UBERON:0007524,9.32e-14,73;UBERON:0003077,1.47e-13,72;UBERON:0007285,1.47e-13,72;UBERON:0000055,4.41e-13,68;UBERON:0007500,6.93e-12,59;UBERON:0001981,6.93e-12,59;UBERON:0004537,6.93e-12,59;UBERON:0006965,6.93e-12,59;UBERON:0001134,7.78e-12,62;UBERON:0002036,7.78e-12,62;UBERON:0003082,7.78e-12,62;UBERON:0004872,2.31e-11,83;UBERON:0002385,6.58e-11,64;UBERON:0001015,6.58e-11,64;UBERON:0000383,6.58e-11,64;UBERON:0004535,8.21e-11,109;UBERON:0001637,2.21e-10,42;UBERON:0003509,2.21e-10,42;UBERON:0004572,2.21e-10,42;UBERON:0003102,3.71e-10,99;UBERON:0005085,5.26e-10,31;UBERON:0001009,9.04e-10,112;UBERON:0004111,7.95e-09,240;UBERON:0004573,1.30e-08,33;UBERON:0004571,1.30e-08,33;UBERON:0000922,1.03e-07,592;UBERON:0001444,2.34e-07,49;UBERON:0000033,4.57e-07,56;UBERON:0001801,5.38e-07,14 | |||
|phase1_expression=3.81524596468169,3.63970890614671,2.81908808191942,3.00219895059391,4.91657203870017,4.36169262050184,0,6.31719873426831,12.7980957817921,11.3037610790694,24.423040879035,5.46103430325431,7.3854753903967,17.3272894144065,22.2036241737704,5.3786011716142,7.8350288643117,7.30310090387373,9.27072317701963,17.4831902469039,24.4800829493104,14.105462466514,5.72471974262113,9.17058647988324,7.28147309649856,0.61130724598361,0.410502947249729,0.550975469195755,0,0,0,8.27479102031034,20.1807965581428,16.6389304575054,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.2568239576754,10.7312137552582,5.37022759742827,5.42158728576849,10.5280961233537,6.66293987219789,3.1811437882044,8.27279279514481,13.0458047686414,16.4079754122297,12.9117134968895,0.916853528483988,34.243757099499,14.4605932685927,0,0.522389211897802,0.132957960518865,0,0,0,4.57153536943422,9.46258054616737,8.67851254018986,6.21838736116411,9.64848703282784,12.380311887303,9.19577852761967,6.71883573840255,4.62496141492723,5.35552980423472,11.2792208790561,5.32190474002959,7.80998584154142,5.8826092855339,16.2028389576352,11.5196649486463,8.08305741454211,7.20713475093262,9.19899824795299,11.3911879148175,7.14486801328588,0,0,28.7822074414073,4.96971951695318,6.20489507156441,8.73900593367244,14.6286676581895,7.80270440836386,8.41016400213461,6.4049397437823,6.90669135568048,8.71390899119346,7.9479296521116,5.72116660897106,9.53551794163068,8.64263886719998,15.2308930691968,19.3539247634799,6.84566185853339,7.92078006924546,7.75067691048848,5.17993421978021,7.30344194851692,16.7406420429012,12.0377630965533,13.1223742093222,10.6920257155385,6.18167323196392,20.0235499626366,35.9309070908119,6.06010010234638,9.50900751026928,9.6972440419464,10.5354629011401,10.1140972613676,6.00952235626387,4.99101605904093,6.63741652048789,5.12537733164562,6.35795703478686,7.50227740211006,5.15262646192194,11.3361837620077,4.83903826462134,8.60759294430458,5.65134629934952,6.31084435610286,4.23429533754577,3.39456719319505,10.6502877754984,6.64963848302426,5.93462073086707,7.73043412653187,12.0008293059967,10.3249654340041,6.09868530647977,5.4337205011809,6.39066685782351,7.15261279606056,6.05570042101508,3.28479623168247,15.6449532329816,11.5783368874719,12.4321429217232,14.3954057689914,15.8813485967309,3.54920400119532,4.04603256187444,2.41011029883482,4.30146493656336,3.92182999366331,2.60997681022206,3.37078270400411,3.33576490713088,1.92373578473195,11.8104872739944,25.2435192846202,18.520830509913,10.2906097969879,0,0,2.95394953340702,0,0.860919069801795,15.9558063577629,23.5963113628545,17.9842805212191,5.32803553781643,19.2583965929742,7.49359102213747,15.5990217791937,8.6598805215164,9.85408442288153,11.1538259524031,7.36268883581476,8.33373922637899,7.61016608938393,0.790204397959275,0,0,0,0,7.49870671894216,5.20744597416465,6.66342957039216,17.6430289724611,19.7631078189494,12.651628412452,0.492663237895943,0.616339038092582,0.207328115540772,0.144119953416961,0.25248486685276,0.952468414382536,3.05590740446622,3.51652341630141,3.4214489204541,2.67351481028641,3.60411669412701,3.42991719156694,10.3160597597732,7.41132117016576,8.9472708701559,6.07577064061555,50.0719024192635,4.22651376278,6.91439103120663,2.08014873822732,15.6896498299907,11.3479305618623,17.5838638150626,8.29272363217256,15.7360265563518,18.9345277459577,6.18898750158097,7.46323092359346,9.50342247520115,9.04318131178758,6.97226766880235,9.69738014465953,0,0,0,5.5113716763064,11.4861935834114,9.98458335285029,9.12122232005749,8.6300055471161,8.77398719875488,0.112085143993527,0,0,0,5.84417635711666,3.90419561572865,0.773288812777695,2.17771144934653,0,0,0,0,21.4710110508495,25.0085260529839,11.3931309953889,6.44709670745502,6.95873056308931,7.7274183366628,7.49705055953364,5.41702979509894,6.82222512167955,5.17365356462525,11.9560607736379,6.26855173041791,10.512917350638,23.8877412104544,12.6963066810017,0,0,0,0.606255142892519,1.66435439510497,5.44302527993425,5.45837177201309,5.52463103837025,4.49056151092918,5.25370511948374,5.11707249066703,4.82561763430822,2.96836132889982,9.25258162815933,7.28003073783821,9.033987161519,14.0198695879578,7.78609535681727,0.362578348774867,17.8450758569924,10.5893137276281,8.26664026785169,8.19410256030227,8.91646021724084,9.92639148396306,7.23944168781499,19.6087442294214,8.76835347919564,10.1329563737161,13.6480060885076,11.5663719588031,12.5231231339241,21.5918153766405,20.0500363782451,22.5760398234684,3.3133915495855,2.49322802678617,14.5518590569416,0,0,11.2838055051211,17.7127908677841,8.45983826127188,2.26690225624989,9.98107166519943,10.3136874900735,32.7331356657818,14.95138565884,11.2478750890912,8.31368177312249,8.78077117553473,9.82423518247229,6.61615547925747,12.7830091393246,13.0515024522806,10.5681017995965,4.5406338179836,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| |||
|short_description=p5@SHC1 | |||
}} |
Latest revision as of 10:47, 17 September 2015
Short description: | p5@SHC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SHC1_5end |
Coexpression cluster: | C2529_Mesenchymal_Corneal_Urothelial_Cardiac_salivary_Sebocyte_Esophageal |
Association with transcript: | -9bp_to_ENST00000368449, ENST00000448116, NM_001130040, NM_183001, uc001ffv.2, uc001ffw.2_5end |
EntrezGene: | SHC1 |
HGNC: | 10840 |
UniProt: | P29353 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.48e-37 | 250 |
mesodermal cell | 6.35e-25 | 121 |
epithelial cell | 1.22e-15 | 253 |
muscle precursor cell | 1.33e-14 | 58 |
myoblast | 1.33e-14 | 58 |
multi-potent skeletal muscle stem cell | 1.33e-14 | 58 |
muscle cell | 6.04e-14 | 55 |
electrically responsive cell | 5.81e-13 | 61 |
electrically active cell | 5.81e-13 | 61 |
fibroblast | 8.93e-12 | 76 |
smooth muscle cell | 4.17e-11 | 43 |
smooth muscle myoblast | 4.17e-11 | 43 |
lining cell | 8.03e-11 | 58 |
barrier cell | 8.03e-11 | 58 |
ectodermal cell | 9.61e-10 | 72 |
squamous epithelial cell | 7.59e-09 | 63 |
vascular associated smooth muscle cell | 3.10e-08 | 32 |
meso-epithelial cell | 3.84e-08 | 45 |
endothelial cell | 4.31e-07 | 36 |