FFCP PHASE1:Mm9::chr11:102308911..102308924,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=217219|HGNC=|MCL_coexpression_id=22|UniProt=|association_with_transcript=-3bp_to_ENSMUST00000152015_5end|description=CAGE_peak_3_at_Fam171a2_5end|id=chr11:102308911..102308924,-|ontology_enrichment_celltype=CL:0000221!5.45e-17!44;CL:0000133!5.45e-17!44;CL:0000540!7.48e-17!33;CL:0000047!7.48e-17!33;CL:0000031!7.48e-17!33;CL:0000404!7.48e-17!33;CL:0002319!1.93e-16!43;CL:0000055!3.99e-15!50;CL:0000393!6.68e-15!39;CL:0000211!6.68e-15!39;CL:0000117!1.49e-14!23;CL:0000337!1.49e-14!23|ontology_enrichment_celltype_v019_2=CL:0000540,4.44e-19,33;CL:0000047,4.44e-19,33;CL:0000031,4.44e-19,33;CL:0000404,4.44e-19,33;CL:0000221,7.83e-18,44;CL:0000133,7.83e-18,44;CL:0002319,3.24e-17,43;CL:0000393,5.74e-17,39;CL:0000211,5.74e-17,39;CL:0000117,1.92e-16,23;CL:0000337,1.92e-16,23;CL:0002321,2.29e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.98e-25!73;UBERON:0005743!5.98e-25!73;UBERON:0000073!1.61e-24!75;UBERON:0001016!1.61e-24!75;UBERON:0004121!3.91e-22!102;UBERON:0000924!3.91e-22!102;UBERON:0006601!3.91e-22!102;UBERON:0002346!2.92e-17!71;UBERON:0003075!2.92e-17!71;UBERON:0007284!2.92e-17!71;UBERON:0000033!3.79e-17!63;UBERON:0001049!1.46e-16!52;UBERON:0005068!1.46e-16!52;UBERON:0006241!1.46e-16!52;UBERON:0007135!1.46e-16!52;UBERON:0000955!3.58e-15!50;UBERON:0006238!3.58e-15!50;UBERON:0002616!9.13e-15!49;UBERON:0002020!1.42e-14!34;UBERON:0003056!2.13e-14!49;UBERON:0002780!3.28e-13!39;UBERON:0001890!3.28e-13!39;UBERON:0006240!3.28e-13!39;UBERON:0003080!1.04e-12!40;UBERON:0002791!2.26e-11!29;UBERON:0003528!2.26e-11!29;UBERON:0001893!2.26e-11!29;UBERON:0000956!3.60e-08!21;UBERON:0001869!3.60e-08!21;UBERON:0000203!3.60e-08!21;UBERON:0004111!4.75e-07!122;UBERON:0000025!6.92e-07!114;UBERON:0000468!7.92e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.23e-25,73;UBERON:0001016,1.85e-24,75;UBERON:0004121,1.34e-22,95;UBERON:0000924,1.34e-22,95;UBERON:0006601,1.34e-22,95;UBERON:0002346,2.05e-18,64;UBERON:0003075,2.05e-18,64;UBERON:0007284,2.05e-18,64;UBERON:0000073,5.98e-18,54;UBERON:0010371,1.38e-16,73;UBERON:0001049,2.15e-16,52;UBERON:0005068,2.15e-16,52;UBERON:0006241,2.15e-16,52;UBERON:0007135,2.15e-16,52;UBERON:0002020,4.89e-16,34;UBERON:0003056,1.72e-14,49;UBERON:0002780,1.07e-13,39;UBERON:0001890,1.07e-13,39;UBERON:0006240,1.07e-13,39;UBERON:0000955,2.69e-13,47;UBERON:0006238,2.69e-13,47;UBERON:0003080,5.82e-13,40;UBERON:0002616,7.35e-13,46;UBERON:0003528,2.14e-12,29;UBERON:0002791,2.14e-12,29;UBERON:0001893,2.14e-12,29;UBERON:0010314,6.97e-12,92;UBERON:0000956,9.52e-09,21;UBERON:0001869,9.52e-09,21;UBERON:0000203,9.52e-09,21|phase1_expression=4.16387002472464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19060606211498,0.0992909512008853,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,1.51076181570693,1.62203089951223,2.20256102594018,0.782391344348039,1.96222640742402,1.5378032791413,1.1665793944457,0.979904951377538,1.43752564364972,0,0,0,1.02903774414379,0.286533439938757,0,7.28339259094552,8.99284664762456,16.4796164911607,0,0.889294796111139,0,0.988866362566974,0.7104801149461,3.29560121570245,5.76327457982332,7.15458324928496,4.59020190327748,6.94072372459561,7.42692559449889,4.8591079009355,6.00204916153275,5.07980996396653,6.43453150627015,3.30347642998166,3.06449611404451,3.22573719838111,8.83638127792299,7.593474419,8.85552729946492,1.67509799400829,3.37657566019008,2.29197371665215,7.66034322231536,5.55249555116501,8.01517617048792,0.605809546665472,1.36028808192214,2.89864488701678,1.72084775396277,0,0,0.649776417447669,0,0.421333260395256,1.02258193546835,0.779358013808606,0.70667914902068,3.38024207464033,0,0,0,0.216491041011214,0.506719730950197,0,0.68510327831436,0,0.148442139064825,2.08182392119363,1.21786191324856,0.691846491768175,1.50722640552623,0.705532242814229,0.251333182659351,0.247194967734374,0,0,1.29413479957927,0.220841518460394,0.484875253135222,0,2.92780797011547,4.60782754989601,0,0.239630249011841,0,0.254140454146129,0.449371918214468,1.37250180845588,5.52879149296603,2.08589184230732,2.30143911597297,1.87009240103604,0.811206315338788,1.52759045775474,0.373220911830279,0.252722758433675,0.631325567659422,3.12289063110489,3.21862946206862,3.24111833649629,2.41127708537144,2.99360596265843,1.2811372028485,3.37326208415024,0.258703370739016,2.80238390812695,2.26927296201383,1.93546236580344,2.84954452155847,0.834141747676794,2.089512999133,1.02891068203972,3.58261680273288,0,0,0,1.86413195281952,0.469052119962192,0.900310307305074,1.42046841351126,0.787056926989615,0.925602677324269,0.232533944750408,1.07309360559848,1.5179494507732,0.822799249567402,1.14917224855367,0.405344047729279,0.584799949701329,0.439100230582101,0,3.15434922846191,3.39585220851639,0,0,1.2797295032114,2.09013004674395,1.54640953586512,0.605050573870028,0.444756087689741,0.570676878337677,0,0.658795818896044,0.251335208800269,0.994782360205754,0.38992817423824,0,0,0.597423819763102,2.46568271239006,2.39921876480431,1.1270773567308,2.64746726198909,2.32742984601151,1.75339549725796,1.07502113111237,0.295220295959204,0.156998727841375,0.740382983530803,0.592905254174298,0.500535317148282,0,0.899448449539415,0.608580364165509,0.482354319504834,0.25462585178142,0,0.486405680325106,0.274561413188081,0,1.11642284300551,0.624075346229121,0.252578877947112,0,0,0.554259570499814,3.7898282354097,1.79261474086228,1.69745085775188,1.40814148973101,2.01007508930179,1.19021820443007,1.56106918286239,0.788175720530955,1.99318220683897,1.43509291791738,0.163863314715738,0.345369963731791,0.578596234326046,0,0,0,0,0.963303539926752,1.40654023910644,1.47541450839008,0,1.26203287766503,1.56175497718655,2.15423397732799,2.62865677747807,2.00518806674155,2.83076530788832,6.47697122679831,3.79932615284705,1.58115111178609,2.89189184779626,0.99358059645788,2.13678724400706,2.76907830901079,1.64970122972535,0,0.485561272309963,1.209294227859,0.943025398779491,0.590603785761546,0,0,2.90826983582004,2.49548164869305,1.58018378967908,0,0,0.680879211507576,2.34079422240703,2.45781499187234,1.50035924522115,2.83744373827638,3.21063871683727,3.29098041204242,4.56697423671899,0.23467170806371,0.21183207086382,0.661585194164886,0.65954501176592,1.29171541356724,0.784068024066026,1.43246812803764,0.492422699235184,0.874442509889552,1.66882771809459,0,2.47664241555867,0,0,0.136694227721025,0,0.509935289981566,0.279902904647316,0.138199973804424,0,2.84702394223022,2.03319467126849,1.18805874903981,1.04544148007234,0.655087691238533,0.674321731924103,1.40510874733071,0.785267825952089,0.259229946583586,0,0,0.747582730219894,2.64733584731356,2.52786544847262,1.80823752868824,1.18269287843545,1.17357238645754,0.5208175393758,0.209718688851422,0,0,0,1.62180172232131,0.513554785824136,0.25984164595559,0.358053391334963,0,0,0,0,0,0,0,0,0,1.13365191807606,0,0,0,0,0.93841237725591,2.74727436400898,1.71494703263253,1.50471631210609,2.25900737046827,5.9842280745933,1.14579102687879,5.499301834998,0.685082519770642,3.0215755895588,2.02506750069542,2.2516060161211,3.62513927187364,3.10656187051092,0.93408612825759,3.99024873401031,2.04880326904961,2.67417388775123,1.04806581313991,1.2869045591501,3.11145418922261,2.26638562962784,3.20919209591815,1.26348605881899,1.01391719956096,1.69763707247469,2.90288673156635,2.24088033417042,2.5845961030026,2.38146845641537,2.31768651889711,1.35036454324594,1.64834360321323,2.94397840268795,0.685738504770831,1.95223386775271,3.09967046931517,2.0348498328526,2.63506265162926,2.36920902096694,1.82927972872773,2.10455769150274,1.7654534799962,1.12228454331548,2.37270036248348,2.36410757701352,0.818462086339379,1.70430525304563,2.89359916471712,2.74791635731741,2.10538447600868,3.22306581072447,4.20834330551455,1.54413993383661,0.927471342481686|short_description=p3@Fam171a2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=217219 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-3bp_to_ENSMUST00000152015_5end | |||
|cluster_id=chr11:102308911..102308924,- | |||
|description=CAGE_peak_3_at_Fam171a2_5end | |||
|id=chr11:102308911..102308924,- | |||
|ontology_enrichment_celltype=CL:0000221!5.45e-17!44;CL:0000133!5.45e-17!44;CL:0000540!7.48e-17!33;CL:0000047!7.48e-17!33;CL:0000031!7.48e-17!33;CL:0000404!7.48e-17!33;CL:0002319!1.93e-16!43;CL:0000055!3.99e-15!50;CL:0000393!6.68e-15!39;CL:0000211!6.68e-15!39;CL:0000117!1.49e-14!23;CL:0000337!1.49e-14!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.44e-19,33;CL:0000047,4.44e-19,33;CL:0000031,4.44e-19,33;CL:0000404,4.44e-19,33;CL:0000221,7.83e-18,44;CL:0000133,7.83e-18,44;CL:0002319,3.24e-17,43;CL:0000393,5.74e-17,39;CL:0000211,5.74e-17,39;CL:0000117,1.92e-16,23;CL:0000337,1.92e-16,23;CL:0002321,2.29e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.98e-25!73;UBERON:0005743!5.98e-25!73;UBERON:0000073!1.61e-24!75;UBERON:0001016!1.61e-24!75;UBERON:0004121!3.91e-22!102;UBERON:0000924!3.91e-22!102;UBERON:0006601!3.91e-22!102;UBERON:0002346!2.92e-17!71;UBERON:0003075!2.92e-17!71;UBERON:0007284!2.92e-17!71;UBERON:0000033!3.79e-17!63;UBERON:0001049!1.46e-16!52;UBERON:0005068!1.46e-16!52;UBERON:0006241!1.46e-16!52;UBERON:0007135!1.46e-16!52;UBERON:0000955!3.58e-15!50;UBERON:0006238!3.58e-15!50;UBERON:0002616!9.13e-15!49;UBERON:0002020!1.42e-14!34;UBERON:0003056!2.13e-14!49;UBERON:0002780!3.28e-13!39;UBERON:0001890!3.28e-13!39;UBERON:0006240!3.28e-13!39;UBERON:0003080!1.04e-12!40;UBERON:0002791!2.26e-11!29;UBERON:0003528!2.26e-11!29;UBERON:0001893!2.26e-11!29;UBERON:0000956!3.60e-08!21;UBERON:0001869!3.60e-08!21;UBERON:0000203!3.60e-08!21;UBERON:0004111!4.75e-07!122;UBERON:0000025!6.92e-07!114;UBERON:0000468!7.92e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.23e-25,73;UBERON:0001016,1.85e-24,75;UBERON:0004121,1.34e-22,95;UBERON:0000924,1.34e-22,95;UBERON:0006601,1.34e-22,95;UBERON:0002346,2.05e-18,64;UBERON:0003075,2.05e-18,64;UBERON:0007284,2.05e-18,64;UBERON:0000073,5.98e-18,54;UBERON:0010371,1.38e-16,73;UBERON:0001049,2.15e-16,52;UBERON:0005068,2.15e-16,52;UBERON:0006241,2.15e-16,52;UBERON:0007135,2.15e-16,52;UBERON:0002020,4.89e-16,34;UBERON:0003056,1.72e-14,49;UBERON:0002780,1.07e-13,39;UBERON:0001890,1.07e-13,39;UBERON:0006240,1.07e-13,39;UBERON:0000955,2.69e-13,47;UBERON:0006238,2.69e-13,47;UBERON:0003080,5.82e-13,40;UBERON:0002616,7.35e-13,46;UBERON:0003528,2.14e-12,29;UBERON:0002791,2.14e-12,29;UBERON:0001893,2.14e-12,29;UBERON:0010314,6.97e-12,92;UBERON:0000956,9.52e-09,21;UBERON:0001869,9.52e-09,21;UBERON:0000203,9.52e-09,21 | |||
|phase1_expression=4.16387002472464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19060606211498,0.0992909512008853,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,1.51076181570693,1.62203089951223,2.20256102594018,0.782391344348039,1.96222640742402,1.5378032791413,1.1665793944457,0.979904951377538,1.43752564364972,0,0,0,1.02903774414379,0.286533439938757,0,7.28339259094552,8.99284664762456,16.4796164911607,0,0.889294796111139,0,0.988866362566974,0.7104801149461,3.29560121570245,5.76327457982332,7.15458324928496,4.59020190327748,6.94072372459561,7.42692559449889,4.8591079009355,6.00204916153275,5.07980996396653,6.43453150627015,3.30347642998166,3.06449611404451,3.22573719838111,8.83638127792299,7.593474419,8.85552729946492,1.67509799400829,3.37657566019008,2.29197371665215,7.66034322231536,5.55249555116501,8.01517617048792,0.605809546665472,1.36028808192214,2.89864488701678,1.72084775396277,0,0,0.649776417447669,0,0.421333260395256,1.02258193546835,0.779358013808606,0.70667914902068,3.38024207464033,0,0,0,0.216491041011214,0.506719730950197,0,0.68510327831436,0,0.148442139064825,2.08182392119363,1.21786191324856,0.691846491768175,1.50722640552623,0.705532242814229,0.251333182659351,0.247194967734374,0,0,1.29413479957927,0.220841518460394,0.484875253135222,0,2.92780797011547,4.60782754989601,0,0.239630249011841,0,0.254140454146129,0.449371918214468,1.37250180845588,5.52879149296603,2.08589184230732,2.30143911597297,1.87009240103604,0.811206315338788,1.52759045775474,0.373220911830279,0.252722758433675,0.631325567659422,3.12289063110489,3.21862946206862,3.24111833649629,2.41127708537144,2.99360596265843,1.2811372028485,3.37326208415024,0.258703370739016,2.80238390812695,2.26927296201383,1.93546236580344,2.84954452155847,0.834141747676794,2.089512999133,1.02891068203972,3.58261680273288,0,0,0,1.86413195281952,0.469052119962192,0.900310307305074,1.42046841351126,0.787056926989615,0.925602677324269,0.232533944750408,1.07309360559848,1.5179494507732,0.822799249567402,1.14917224855367,0.405344047729279,0.584799949701329,0.439100230582101,0,3.15434922846191,3.39585220851639,0,0,1.2797295032114,2.09013004674395,1.54640953586512,0.605050573870028,0.444756087689741,0.570676878337677,0,0.658795818896044,0.251335208800269,0.994782360205754,0.38992817423824,0,0,0.597423819763102,2.46568271239006,2.39921876480431,1.1270773567308,2.64746726198909,2.32742984601151,1.75339549725796,1.07502113111237,0.295220295959204,0.156998727841375,0.740382983530803,0.592905254174298,0.500535317148282,0,0.899448449539415,0.608580364165509,0.482354319504834,0.25462585178142,0,0.486405680325106,0.274561413188081,0,1.11642284300551,0.624075346229121,0.252578877947112,0,0,0.554259570499814,3.7898282354097,1.79261474086228,1.69745085775188,1.40814148973101,2.01007508930179,1.19021820443007,1.56106918286239,0.788175720530955,1.99318220683897,1.43509291791738,0.163863314715738,0.345369963731791,0.578596234326046,0,0,0,0,0.963303539926752,1.40654023910644,1.47541450839008,0,1.26203287766503,1.56175497718655,2.15423397732799,2.62865677747807,2.00518806674155,2.83076530788832,6.47697122679831,3.79932615284705,1.58115111178609,2.89189184779626,0.99358059645788,2.13678724400706,2.76907830901079,1.64970122972535,0,0.485561272309963,1.209294227859,0.943025398779491,0.590603785761546,0,0,2.90826983582004,2.49548164869305,1.58018378967908,0,0,0.680879211507576,2.34079422240703,2.45781499187234,1.50035924522115,2.83744373827638,3.21063871683727,3.29098041204242,4.56697423671899,0.23467170806371,0.21183207086382,0.661585194164886,0.65954501176592,1.29171541356724,0.784068024066026,1.43246812803764,0.492422699235184,0.874442509889552,1.66882771809459,0,2.47664241555867,0,0,0.136694227721025,0,0.509935289981566,0.279902904647316,0.138199973804424,0,2.84702394223022,2.03319467126849,1.18805874903981,1.04544148007234,0.655087691238533,0.674321731924103,1.40510874733071,0.785267825952089,0.259229946583586,0,0,0.747582730219894,2.64733584731356,2.52786544847262,1.80823752868824,1.18269287843545,1.17357238645754,0.5208175393758,0.209718688851422,0,0,0,1.62180172232131,0.513554785824136,0.25984164595559,0.358053391334963,0,0,0,0,0,0,0,0,0,1.13365191807606,0,0,0,0,0.93841237725591,2.74727436400898,1.71494703263253,1.50471631210609,2.25900737046827,5.9842280745933,1.14579102687879,5.499301834998,0.685082519770642,3.0215755895588,2.02506750069542,2.2516060161211,3.62513927187364,3.10656187051092,0.93408612825759,3.99024873401031,2.04880326904961,2.67417388775123,1.04806581313991,1.2869045591501,3.11145418922261,2.26638562962784,3.20919209591815,1.26348605881899,1.01391719956096,1.69763707247469,2.90288673156635,2.24088033417042,2.5845961030026,2.38146845641537,2.31768651889711,1.35036454324594,1.64834360321323,2.94397840268795,0.685738504770831,1.95223386775271,3.09967046931517,2.0348498328526,2.63506265162926,2.36920902096694,1.82927972872773,2.10455769150274,1.7654534799962,1.12228454331548,2.37270036248348,2.36410757701352,0.818462086339379,1.70430525304563,2.89359916471712,2.74791635731741,2.10538447600868,3.22306581072447,4.20834330551455,1.54413993383661,0.927471342481686 | |||
|short_description=p3@Fam171a2 | |||
}} |
Latest revision as of 18:33, 26 September 2015
Short description: | p3@Fam171a2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Fam171a2_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -3bp_to_ENSMUST00000152015_5end |
EntrezGene: | Fam171a2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.44e-19 | 33 |
neuronal stem cell | 4.44e-19 | 33 |
neuroblast | 4.44e-19 | 33 |
electrically signaling cell | 4.44e-19 | 33 |
ectodermal cell | 7.83e-18 | 44 |
neurectodermal cell | 7.83e-18 | 44 |
neural cell | 3.24e-17 | 43 |
electrically responsive cell | 5.74e-17 | 39 |
electrically active cell | 5.74e-17 | 39 |
CNS neuron (sensu Vertebrata) | 1.92e-16 | 23 |
neuroblast (sensu Vertebrata) | 1.92e-16 | 23 |
embryonic cell | 2.29e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.23e-25 | 73 |
nervous system | 1.85e-24 | 75 |
ectoderm-derived structure | 1.34e-22 | 95 |
ectoderm | 1.34e-22 | 95 |
presumptive ectoderm | 1.34e-22 | 95 |
neurectoderm | 2.05e-18 | 64 |
neural plate | 2.05e-18 | 64 |
presumptive neural plate | 2.05e-18 | 64 |
regional part of nervous system | 5.98e-18 | 54 |
ecto-epithelium | 1.38e-16 | 73 |
neural tube | 2.15e-16 | 52 |
neural rod | 2.15e-16 | 52 |
future spinal cord | 2.15e-16 | 52 |
neural keel | 2.15e-16 | 52 |
gray matter | 4.89e-16 | 34 |
pre-chordal neural plate | 1.72e-14 | 49 |
regional part of forebrain | 1.07e-13 | 39 |
forebrain | 1.07e-13 | 39 |
future forebrain | 1.07e-13 | 39 |
brain | 2.69e-13 | 47 |
future brain | 2.69e-13 | 47 |
anterior neural tube | 5.82e-13 | 40 |
regional part of brain | 7.35e-13 | 46 |
brain grey matter | 2.14e-12 | 29 |
regional part of telencephalon | 2.14e-12 | 29 |
telencephalon | 2.14e-12 | 29 |
structure with developmental contribution from neural crest | 6.97e-12 | 92 |
cerebral cortex | 9.52e-09 | 21 |
cerebral hemisphere | 9.52e-09 | 21 |
pallium | 9.52e-09 | 21 |