FFCP PHASE1:Mm9::chr14:62218330..62218385,+: Difference between revisions
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{{FFCP|EntrezGene=66597|HGNC=|UniProt=Q9CYB0,A6H6L2|association_with_transcript=0bp_to_ENSMUST00000039562,NM_023233,uc007ufz.2_5end|description=CAGE_peak_1_at_Trim13_5end|id=chr14:62218330..62218385,+|ontology_enrichment_celltype=CL:0000540!1.31e-13!33;CL:0000047!1.31e-13!33;CL:0000031!1.31e-13!33;CL:0000404!1.31e-13!33;CL:0000393!4.32e-13!39;CL:0000211!4.32e-13!39;CL:0000117!2.07e-10!23;CL:0000337!2.07e-10!23;CL:0000221!4.78e-09!44;CL:0000133!4.78e-09!44;CL:0002319!1.35e-08!43;CL:0000055!1.79e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.23e-13,33;CL:0000047,1.23e-13,33;CL:0000031,1.23e-13,33;CL:0000404,1.23e-13,33;CL:0000393,4.07e-13,39;CL:0000211,4.07e-13,39;CL:0000117,1.97e-10,23;CL:0000337,1.97e-10,23;CL:0000221,4.38e-09,44;CL:0000133,4.38e-09,44;CL:0002319,1.24e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.14e-15!75;UBERON:0001016!4.14e-15!75;UBERON:0004121!4.22e-14!102;UBERON:0000924!4.22e-14!102;UBERON:0006601!4.22e-14!102;UBERON:0001017!6.62e-14!73;UBERON:0005743!6.62e-14!73;UBERON:0002020!2.44e-11!34;UBERON:0001049!3.54e-11!52;UBERON:0005068!3.54e-11!52;UBERON:0006241!3.54e-11!52;UBERON:0007135!3.54e-11!52;UBERON:0002346!1.43e-10!71;UBERON:0003075!1.43e-10!71;UBERON:0007284!1.43e-10!71;UBERON:0003080!5.36e-10!40;UBERON:0000955!8.13e-10!50;UBERON:0006238!8.13e-10!50;UBERON:0002616!9.18e-10!49;UBERON:0002791!1.03e-09!29;UBERON:0003528!1.03e-09!29;UBERON:0001893!1.03e-09!29;UBERON:0002780!1.32e-09!39;UBERON:0001890!1.32e-09!39;UBERON:0006240!1.32e-09!39;UBERON:0000033!1.66e-09!63;UBERON:0003056!7.77e-09!49|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.67e-15,75;UBERON:0004121,1.20e-14,95;UBERON:0000924,1.20e-14,95;UBERON:0006601,1.20e-14,95;UBERON:0001017,5.91e-14,73;UBERON:0010371,1.88e-11,73;UBERON:0000073,2.38e-11,54;UBERON:0002020,2.65e-11,34;UBERON:0002346,3.33e-11,64;UBERON:0003075,3.33e-11,64;UBERON:0007284,3.33e-11,64;UBERON:0010314,3.41e-11,92;UBERON:0001049,3.76e-11,52;UBERON:0005068,3.76e-11,52;UBERON:0006241,3.76e-11,52;UBERON:0007135,3.76e-11,52;UBERON:0003080,5.76e-10,40;UBERON:0003528,1.13e-09,29;UBERON:0002791,1.13e-09,29;UBERON:0001893,1.13e-09,29;UBERON:0002780,1.42e-09,39;UBERON:0001890,1.42e-09,39;UBERON:0006240,1.42e-09,39;UBERON:0000955,3.69e-09,47;UBERON:0006238,3.69e-09,47;UBERON:0002616,4.16e-09,46;UBERON:0003056,8.25e-09,49|phase1_expression=4.48416771893423,0.697950815278722,0.454999239389536,0,0,0.503637815735669,1.40167584357315,1.67860320474049,1.97104211012333,0.936258105287974,0.34243593645101,0.239316476986009,2.9104124088305,1.66098764596095,1.99865857089398,1.01237633694913,1.39912375625629,0.788655413395594,0.548457734422955,0,2.38121212422995,0.397163804803541,1.04479915655574,1.11994695955385,1.37645568640302,2.29692785646008,1.7230479846363,0.430942465371778,3.99049180858385,1.26015064879965,1.10865255327652,0,3.07532393792285,0,0.288851619751275,0.831173226792462,0.816677425049476,2.09265815368454,1.5626706890476,1.57057123192139,0,0,1.45653105909346,4.02869817521847,4.76471576731718,4.77221555620372,1.56478268869608,1.52617609466313,1.09843091367236,0.777719596297134,1.67983705950435,0,0.503347818173209,3.62681071005672,5.37750078627942,2.57259436035947,2.0057340795713,2.57836046138721,7.28339259094552,6.87688273053643,3.80298842103708,1.35537812827653,0.889294796111139,2.2497492932035,2.96659908770092,0,0.599200221036809,1.92109152660777,10.0578923939223,13.2305819565057,9.88527318351495,3.71346279724945,3.3130281142742,13.1065155160001,10.1596199279331,8.27296907949019,5.50579404996943,5.10749352340751,2.76491759861238,7.25374582516066,10.7955419450843,10.4182674111352,3.90856198601933,3.37657566019008,4.5839474333043,5.89257170947335,7.97281412474976,7.82877672466262,11.5861075799772,13.0738798984739,2.6087803983151,2.58127163094416,0.679971333707751,0,1.29955283489534,1.34408066129201,3.37066608316204,4.60161870960756,4.41636207824877,4.59341446863442,5.91542363062058,3.84979432242953,0,0,3.46385665617943,4.81383744402687,5.05524445014783,1.37020655662872,1.29468941823586,4.60170631100957,2.4287945747259,3.04465478312141,1.61430848079241,2.41156224884196,4.23319345688537,2.13633205260448,5.19109432242185,2.60278842455841,0.884610551949874,2.26473589926373,1.76673214768315,1.45462575940567,1.86391761218122,2.34224637609238,3.35114730901528,0.766371165625774,5.15205035375457,4.79922184794726,6.73472203487243,5.09288173976397,5.03250663100489,11.9371634507221,3.12883776346098,3.58001640262463,5.40248915854856,4.54275536589721,2.85150218780886,1.61729061793121,3.53811861807145,2.31486041475121,3.513251959993,3.67843367093557,4.14142898552303,2.10986744970001,2.24520447199382,3.45907044769094,2.81105173679186,2.06962696591213,3.44908788692548,5.29497024469894,3.69497360744293,5.69908904311695,3.89266148915837,4.52727816478817,2.88094990971121,4.17971960318836,8.42655824775882,10.5512641917033,7.95657798307659,3.31401236056803,2.81431271977315,3.78130329068131,1.89395788468168,4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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=66597 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q9CYB0,A6H6L2 | |||
|association_with_transcript=0bp_to_ENSMUST00000039562,NM_023233,uc007ufz.2_5end | |||
|cluster_id=chr14:62218330..62218385,+ | |||
|description=CAGE_peak_1_at_Trim13_5end | |||
|id=chr14:62218330..62218385,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.31e-13!33;CL:0000047!1.31e-13!33;CL:0000031!1.31e-13!33;CL:0000404!1.31e-13!33;CL:0000393!4.32e-13!39;CL:0000211!4.32e-13!39;CL:0000117!2.07e-10!23;CL:0000337!2.07e-10!23;CL:0000221!4.78e-09!44;CL:0000133!4.78e-09!44;CL:0002319!1.35e-08!43;CL:0000055!1.79e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.23e-13,33;CL:0000047,1.23e-13,33;CL:0000031,1.23e-13,33;CL:0000404,1.23e-13,33;CL:0000393,4.07e-13,39;CL:0000211,4.07e-13,39;CL:0000117,1.97e-10,23;CL:0000337,1.97e-10,23;CL:0000221,4.38e-09,44;CL:0000133,4.38e-09,44;CL:0002319,1.24e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.14e-15!75;UBERON:0001016!4.14e-15!75;UBERON:0004121!4.22e-14!102;UBERON:0000924!4.22e-14!102;UBERON:0006601!4.22e-14!102;UBERON:0001017!6.62e-14!73;UBERON:0005743!6.62e-14!73;UBERON:0002020!2.44e-11!34;UBERON:0001049!3.54e-11!52;UBERON:0005068!3.54e-11!52;UBERON:0006241!3.54e-11!52;UBERON:0007135!3.54e-11!52;UBERON:0002346!1.43e-10!71;UBERON:0003075!1.43e-10!71;UBERON:0007284!1.43e-10!71;UBERON:0003080!5.36e-10!40;UBERON:0000955!8.13e-10!50;UBERON:0006238!8.13e-10!50;UBERON:0002616!9.18e-10!49;UBERON:0002791!1.03e-09!29;UBERON:0003528!1.03e-09!29;UBERON:0001893!1.03e-09!29;UBERON:0002780!1.32e-09!39;UBERON:0001890!1.32e-09!39;UBERON:0006240!1.32e-09!39;UBERON:0000033!1.66e-09!63;UBERON:0003056!7.77e-09!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.67e-15,75;UBERON:0004121,1.20e-14,95;UBERON:0000924,1.20e-14,95;UBERON:0006601,1.20e-14,95;UBERON:0001017,5.91e-14,73;UBERON:0010371,1.88e-11,73;UBERON:0000073,2.38e-11,54;UBERON:0002020,2.65e-11,34;UBERON:0002346,3.33e-11,64;UBERON:0003075,3.33e-11,64;UBERON:0007284,3.33e-11,64;UBERON:0010314,3.41e-11,92;UBERON:0001049,3.76e-11,52;UBERON:0005068,3.76e-11,52;UBERON:0006241,3.76e-11,52;UBERON:0007135,3.76e-11,52;UBERON:0003080,5.76e-10,40;UBERON:0003528,1.13e-09,29;UBERON:0002791,1.13e-09,29;UBERON:0001893,1.13e-09,29;UBERON:0002780,1.42e-09,39;UBERON:0001890,1.42e-09,39;UBERON:0006240,1.42e-09,39;UBERON:0000955,3.69e-09,47;UBERON:0006238,3.69e-09,47;UBERON:0002616,4.16e-09,46;UBERON:0003056,8.25e-09,49 | |||
|phase1_expression=4.48416771893423,0.697950815278722,0.454999239389536,0,0,0.503637815735669,1.40167584357315,1.67860320474049,1.97104211012333,0.936258105287974,0.34243593645101,0.239316476986009,2.9104124088305,1.66098764596095,1.99865857089398,1.01237633694913,1.39912375625629,0.788655413395594,0.548457734422955,0,2.38121212422995,0.397163804803541,1.04479915655574,1.11994695955385,1.37645568640302,2.29692785646008,1.7230479846363,0.430942465371778,3.99049180858385,1.26015064879965,1.10865255327652,0,3.07532393792285,0,0.288851619751275,0.831173226792462,0.816677425049476,2.09265815368454,1.5626706890476,1.57057123192139,0,0,1.45653105909346,4.02869817521847,4.76471576731718,4.77221555620372,1.56478268869608,1.52617609466313,1.09843091367236,0.777719596297134,1.67983705950435,0,0.503347818173209,3.62681071005672,5.37750078627942,2.57259436035947,2.0057340795713,2.57836046138721,7.28339259094552,6.87688273053643,3.80298842103708,1.35537812827653,0.889294796111139,2.2497492932035,2.96659908770092,0,0.599200221036809,1.92109152660777,10.0578923939223,13.2305819565057,9.88527318351495,3.71346279724945,3.3130281142742,13.1065155160001,10.1596199279331,8.27296907949019,5.50579404996943,5.10749352340751,2.76491759861238,7.25374582516066,10.7955419450843,10.4182674111352,3.90856198601933,3.37657566019008,4.5839474333043,5.89257170947335,7.97281412474976,7.82877672466262,11.5861075799772,13.0738798984739,2.6087803983151,2.58127163094416,0.679971333707751,0,1.29955283489534,1.34408066129201,3.37066608316204,4.60161870960756,4.41636207824877,4.59341446863442,5.91542363062058,3.84979432242953,0,0,3.46385665617943,4.81383744402687,5.05524445014783,1.37020655662872,1.29468941823586,4.60170631100957,2.4287945747259,3.04465478312141,1.61430848079241,2.41156224884196,4.23319345688537,2.13633205260448,5.19109432242185,2.60278842455841,0.884610551949874,2.26473589926373,1.76673214768315,1.45462575940567,1.86391761218122,2.34224637609238,3.35114730901528,0.766371165625774,5.15205035375457,4.79922184794726,6.73472203487243,5.09288173976397,5.03250663100489,11.9371634507221,3.12883776346098,3.58001640262463,5.40248915854856,4.54275536589721,2.85150218780886,1.61729061793121,3.53811861807145,2.31486041475121,3.513251959993,3.67843367093557,4.14142898552303,2.10986744970001,2.24520447199382,3.45907044769094,2.81105173679186,2.06962696591213,3.44908788692548,5.29497024469894,3.69497360744293,5.69908904311695,3.89266148915837,4.52727816478817,2.88094990971121,4.17971960318836,8.42655824775882,10.5512641917033,7.95657798307659,3.31401236056803,2.81431271977315,3.78130329068131,1.89395788468168,4.52557733019029,1.85120535464854,2.32533944750408,2.95100741539581,3.97002164048376,4.44311594766397,4.10418660197738,2.83740833410495,3.21639972335731,3.51280184465681,3.08674763148855,5.25724871410318,12.7601719350313,0.660837565967596,1.05780226665418,4.69234151177515,3.94802342162745,1.80414445850931,2.01683524623343,1.33426826306922,1.33157938278791,0.474529061544512,2.9645811850322,2.5133520880027,1.79060824837036,2.14460495831032,0.898819408654221,1.72910439899755,1.39398891278057,2.65535061334314,1.94222471436539,1.1270773567308,3.05476991767971,2.90928730751439,2.59502533594179,2.27651533647326,3.54264355151045,3.1399745568275,2.83813477020141,1.1858105083486,2.50267658574141,1.17935397067922,0.899448449539415,1.01430060694251,0.964708639009667,2.5462585178142,0.863088412352432,1.45921704097532,1.92192989231657,1.43768206527355,1.48856379067401,0.624075346229121,2.02063102357689,2.51156378930677,1.92977408545347,3.69506380333209,3.60033682363921,1.95557971730431,2.03694102930226,2.58159273117352,3.35012514883632,4.99891645860629,3.12213836572478,4.25614889086716,3.10050565508285,2.55127629851979,2.13022309130459,2.07221978239075,3.03763023021174,3.01582567878545,4.35124547054968,1.96705709207614,0.551873492609465,6.26147300952389,3.6335622843583,1.80328439914343,3.53459298086122,3.78609863299508,5.85658116444958,5.60100834105277,3.58453196928828,6.01556420022464,3.96307143104365,6.8817819284732,4.38383786866968,4.74345333535828,3.53453448063988,2.6968616189571,2.31485284767432,5.04949573996086,2.8044920905331,1.32745138339963,2.42780636154981,2.11626489875326,3.01768127609437,0.590603785761546,3.3817866273832,2.06742634534577,2.90826983582004,2.13898427030833,0.316036757935816,2.10837217149998,0,4.76615448055303,3.24109969256358,1.94038025674132,4.28674070063185,4.07882537377229,2.14042581122485,2.96188237083818,2.13125464380219,4.4587624532105,5.50763384245932,0.661585194164886,3.46261131177108,6.45857706783622,3.31721087104857,4.8942661041286,1.96969079694074,0.874442509889552,5.56275906031529,1.53783792718067,2.68302928352189,2.03713980106683,1.69531611304222,1.36694227721025,0.686334519619568,4.75939603982795,4.05859211738608,6.08079884739465,3.81868247206045,2.84702394223022,3.45643094115643,2.70013352054503,3.97267762427491,2.62035076495413,2.83215127408124,3.55409859618945,4.18809507174447,2.20345454596048,1.24267862617385,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| |||
|short_description=p1@Trim13 | |||
}} |
Latest revision as of 05:22, 26 September 2015
Short description: | p1@Trim13 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Trim13_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000039562, NM_023233, uc007ufz.2_5end |
EntrezGene: | Trim13 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.23e-13 | 33 |
neuronal stem cell | 1.23e-13 | 33 |
neuroblast | 1.23e-13 | 33 |
electrically signaling cell | 1.23e-13 | 33 |
electrically responsive cell | 4.07e-13 | 39 |
electrically active cell | 4.07e-13 | 39 |
CNS neuron (sensu Vertebrata) | 1.97e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.97e-10 | 23 |
ectodermal cell | 4.38e-09 | 44 |
neurectodermal cell | 4.38e-09 | 44 |
neural cell | 1.24e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.67e-15 | 75 |
ectoderm-derived structure | 1.20e-14 | 95 |
ectoderm | 1.20e-14 | 95 |
presumptive ectoderm | 1.20e-14 | 95 |
central nervous system | 5.91e-14 | 73 |
ecto-epithelium | 1.88e-11 | 73 |
regional part of nervous system | 2.38e-11 | 54 |
gray matter | 2.65e-11 | 34 |
neurectoderm | 3.33e-11 | 64 |
neural plate | 3.33e-11 | 64 |
presumptive neural plate | 3.33e-11 | 64 |
structure with developmental contribution from neural crest | 3.41e-11 | 92 |
neural tube | 3.76e-11 | 52 |
neural rod | 3.76e-11 | 52 |
future spinal cord | 3.76e-11 | 52 |
neural keel | 3.76e-11 | 52 |
anterior neural tube | 5.76e-10 | 40 |
brain grey matter | 1.13e-09 | 29 |
regional part of telencephalon | 1.13e-09 | 29 |
telencephalon | 1.13e-09 | 29 |
regional part of forebrain | 1.42e-09 | 39 |
forebrain | 1.42e-09 | 39 |
future forebrain | 1.42e-09 | 39 |
brain | 3.69e-09 | 47 |
future brain | 3.69e-09 | 47 |
regional part of brain | 4.16e-09 | 46 |
pre-chordal neural plate | 8.25e-09 | 49 |