FFCP PHASE1:Hg19::chrX:10588595..10588634,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:10588595..10588634,-
|short_description=p1@MID1
|description=CAGE_peak_1_at_MID1_5end
|association_with_transcript=0bp_to_ENST00000423614_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4281 | |EntrezGene=4281 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7095 | |HGNC=7095 | ||
|TSSclassifier=strong | |||
|UniProt=C9JZJ7 | |UniProt=C9JZJ7 | ||
|association_with_transcript=0bp_to_ENST00000423614_5end | |||
|cluster_id=chrX:10588595..10588634,- | |||
|description=CAGE_peak_1_at_MID1_5end | |||
|id=chrX:10588595..10588634,- | |||
|ontology_enrichment_celltype=CL:0000066!2.29e-14!254;CL:0000055!7.23e-13!180;CL:0000075!2.55e-09!27;CL:0000133!9.42e-09!59;CL:0000221!1.77e-08!71;CL:0002321!2.25e-08!248;CL:0000710!2.95e-08!20;CL:0000220!8.22e-08!246;CL:0000147!4.05e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000075;6.57e-09;27!CL:0000710;6.41e-08;20!CL:0000147;3.06e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.76e-13,253;CL:0000075,5.04e-09,27;CL:0000133,4.87e-08,59;CL:0000710,6.60e-08,20;CL:0000221,1.23e-07,72;CL:0002321,2.21e-07,250;CL:0000147,3.14e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.39e-07;29 | |||
|ontology_enrichment_disease=DOID:0050687!1.25e-12!143;DOID:305!3.98e-11!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,2.66e-12,143;DOID:305,5.75e-11,106 | |||
|ontology_enrichment_uberon=UBERON:0000481!3.91e-22!347;UBERON:0000475!2.78e-18!365;UBERON:0000468!6.15e-18!659;UBERON:0000064!2.16e-14!219;UBERON:0000922!7.02e-14!612;UBERON:0004121!1.28e-13!169;UBERON:0000480!1.42e-13!626;UBERON:0000477!1.52e-13!286;UBERON:0000924!1.64e-13!173;UBERON:0006601!1.64e-13!173;UBERON:0000467!2.27e-13!625;UBERON:0000033!1.07e-12!123;UBERON:0000483!8.00e-12!309;UBERON:0000119!9.47e-12!312;UBERON:0004119!1.49e-11!169;UBERON:0000925!1.49e-11!169;UBERON:0006595!1.49e-11!169;UBERON:0000153!1.53e-11!129;UBERON:0007811!1.53e-11!129;UBERON:0002050!1.75e-11!605;UBERON:0005423!1.75e-11!605;UBERON:0000923!3.14e-11!604;UBERON:0005291!3.14e-11!604;UBERON:0006598!3.14e-11!604;UBERON:0002532!3.14e-11!604;UBERON:0000062!5.16e-11!511;UBERON:0001007!8.19e-11!155;UBERON:0001555!8.19e-11!155;UBERON:0007026!8.19e-11!155;UBERON:0003104!2.05e-09!238;UBERON:0009142!2.05e-09!238;UBERON:0004111!5.59e-09!241;UBERON:0001444!1.74e-08!48;UBERON:0003075!1.20e-07!86;UBERON:0007284!1.20e-07!86;UBERON:0000063!1.44e-07!97;UBERON:0005743!1.50e-07!86;UBERON:0002346!1.68e-07!90;UBERON:0003056!2.62e-07!61;UBERON:0001017!8.16e-07!82;UBERON:0000073!8.49e-07!94;UBERON:0001016!8.49e-07!94 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,9.23e-15,223;UBERON:0004121,5.63e-13,171;UBERON:0000924,5.63e-13,171;UBERON:0006601,5.63e-13,171;UBERON:0004119,9.36e-13,160;UBERON:0000925,9.36e-13,160;UBERON:0006595,9.36e-13,160;UBERON:0001007,9.56e-12,145;UBERON:0001555,9.56e-12,145;UBERON:0007026,9.56e-12,145;UBERON:0000483,6.09e-10,306;UBERON:0000119,7.06e-10,309;UBERON:0000922,1.17e-09,592;UBERON:0005423,2.33e-08,581;UBERON:0000033,2.62e-08,56;UBERON:0001444,8.59e-08,49;UBERON:0004111,1.09e-07,240;UBERON:0003075,3.53e-07,82;UBERON:0007284,3.53e-07,82;UBERON:0010314,4.64e-07,132;UBERON:0002346,5.87e-07,86;UBERON:0002050,5.99e-07,564;UBERON:0000153,6.90e-07,62;UBERON:0007811,6.90e-07,62;UBERON:0003056,7.40e-07,61 | |||
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| ||
|short_description=p1@MID1 | |||
}} | }} |
Latest revision as of 22:07, 18 September 2015
Short description: | p1@MID1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MID1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000423614_5end |
EntrezGene: | MID1 |
HGNC: | 7095 |
UniProt: | C9JZJ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.76e-13 | 253 |
columnar/cuboidal epithelial cell | 5.04e-09 | 27 |
neurectodermal cell | 4.87e-08 | 59 |
neurecto-epithelial cell | 6.60e-08 | 20 |
ectodermal cell | 1.23e-07 | 72 |
embryonic cell | 2.21e-07 | 250 |
pigment cell | 3.14e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 9.23e-15 | 223 |
ectoderm-derived structure | 5.63e-13 | 171 |
ectoderm | 5.63e-13 | 171 |
presumptive ectoderm | 5.63e-13 | 171 |
endoderm-derived structure | 9.36e-13 | 160 |
endoderm | 9.36e-13 | 160 |
presumptive endoderm | 9.36e-13 | 160 |
digestive system | 9.56e-12 | 145 |
digestive tract | 9.56e-12 | 145 |
primitive gut | 9.56e-12 | 145 |
epithelium | 6.09e-10 | 306 |
cell layer | 7.06e-10 | 309 |
embryo | 1.17e-09 | 592 |
developing anatomical structure | 2.33e-08 | 581 |
head | 2.62e-08 | 56 |
subdivision of head | 8.59e-08 | 49 |
anatomical conduit | 1.09e-07 | 240 |
neural plate | 3.53e-07 | 82 |
presumptive neural plate | 3.53e-07 | 82 |
structure with developmental contribution from neural crest | 4.64e-07 | 132 |
neurectoderm | 5.87e-07 | 86 |
embryonic structure | 5.99e-07 | 564 |
anterior region of body | 6.90e-07 | 62 |
craniocervical region | 6.90e-07 | 62 |
pre-chordal neural plate | 7.40e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 2.66e-12 | 143 |
carcinoma | 5.75e-11 | 106 |