FFCP PHASE1:Hg19::chr6:114292476..114292491,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3066 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4853 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-27bp_to_ENST00000519065_5end | |||
|cluster_id=chr6:114292476..114292491,- | |||
|description=CAGE_peak_3_at_HDAC2_5end | |||
|id=chr6:114292476..114292491,- | |||
|ontology_enrichment_celltype=CL:0000763!1.91e-40!112;CL:0000049!1.91e-40!112;CL:0000037!7.43e-40!172;CL:0000566!7.43e-40!172;CL:0002032!1.41e-36!165;CL:0000837!1.41e-36!165;CL:0000988!2.53e-36!182;CL:0000766!1.01e-29!76;CL:0000557!2.71e-29!71;CL:0000738!5.78e-29!140;CL:0002009!2.68e-28!65;CL:0002194!2.12e-27!63;CL:0000576!2.12e-27!63;CL:0000040!2.12e-27!63;CL:0000559!2.12e-27!63;CL:0000839!3.40e-26!70;CL:0002087!2.26e-23!119;CL:0002031!1.41e-22!124;CL:0000860!4.91e-20!45;CL:0002057!1.48e-19!42;CL:0000219!2.73e-09!390;CL:0000945!4.16e-09!24;CL:0000826!4.16e-09!24;CL:0000134!6.32e-08!358;CL:0002320!3.74e-07!365;CL:0000034!8.48e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000473;6.68e-18;39!CL:0000234;6.68e-18;39!CL:0000576;1.34e-17;48!CL:0000860;3.83e-17;33!CL:0002057;3.83e-17;33!CL:0000766;4.05e-15;69!CL:0000763;1.07e-14;100!CL:0000738;2.88e-09;136!CL:0000945;3.74e-09;24!CL:0000988;7.16e-08;177!CL:0002087;1.21e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,8.76e-48,108;CL:0000049,8.76e-48,108;CL:0000037,2.07e-46,168;CL:0000988,2.66e-43,177;CL:0002032,1.70e-42,161;CL:0000837,1.70e-42,161;CL:0000766,2.20e-36,72;CL:0000557,2.14e-35,67;CL:0002009,5.30e-35,61;CL:0000738,4.64e-34,136;CL:0002194,6.32e-34,59;CL:0000576,6.32e-34,59;CL:0000040,6.32e-34,59;CL:0000559,6.32e-34,59;CL:0000839,1.54e-31,66;CL:0002087,8.47e-28,115;CL:0000473,3.14e-27,48;CL:0000234,3.14e-27,48;CL:0002031,2.51e-26,120;CL:0000860,3.59e-23,42;CL:0002057,3.59e-23,42;CL:0000219,4.42e-11,386;CL:0000945,8.65e-10,24;CL:0000826,8.65e-10,24;CL:0000134,2.57e-09,354;CL:0000034,2.28e-08,441;CL:0002320,2.98e-08,361;CL:0000723,6.58e-07,433;CL:0000048,9.79e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;4.89e-17;42!CL:0000049;1.63e-14;108 | |||
|ontology_enrichment_disease=DOID:2531!3.75e-14!51;DOID:0060083!3.75e-14!51;DOID:1240!2.97e-13!39;DOID:8692!2.85e-12!31;DOID:162!5.15e-08!235;DOID:14566!6.64e-08!239 | |||
|ontology_enrichment_disease_v019=DOID:8692;3.43e-13;31!DOID:1240;4.61e-12;39!DOID:2531;5.11e-09;51!DOID:0060083;5.11e-09;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,4.09e-15,51;DOID:0060083,4.09e-15,51;DOID:1240,1.27e-14,39;DOID:8692,1.19e-13,31 | |||
|ontology_enrichment_uberon=UBERON:0002371!8.31e-26!80;UBERON:0002390!1.29e-25!102;UBERON:0003061!1.29e-25!102;UBERON:0001474!1.44e-25!86;UBERON:0002193!1.15e-23!112;UBERON:0004765!2.14e-21!101;UBERON:0001434!2.14e-21!101;UBERON:0002405!9.16e-18!115;UBERON:0002204!1.71e-09!167;UBERON:0002384!4.86e-08!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.75e-32,76;UBERON:0002390,7.47e-32,98;UBERON:0003061,7.47e-32,98;UBERON:0001474,1.69e-31,82;UBERON:0002193,1.46e-29,108;UBERON:0002405,1.38e-28,93;UBERON:0004765,1.21e-25,90;UBERON:0001434,3.50e-24,100;UBERON:0002204,6.41e-10,167;UBERON:0002384,4.46e-09,371 | |||
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| |||
|short_description=p3@HDAC2 | |||
}} |
Latest revision as of 00:00, 20 September 2015
Short description: | p3@HDAC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HDAC2_5end |
Coexpression cluster: | NA |
Association with transcript: | -27bp_to_ENST00000519065_5end |
EntrezGene: | HDAC2 |
HGNC: | 4853 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 8.76e-48 | 108 |
common myeloid progenitor | 8.76e-48 | 108 |
hematopoietic stem cell | 2.07e-46 | 168 |
hematopoietic cell | 2.66e-43 | 177 |
hematopoietic oligopotent progenitor cell | 1.70e-42 | 161 |
hematopoietic multipotent progenitor cell | 1.70e-42 | 161 |
myeloid leukocyte | 2.20e-36 | 72 |
granulocyte monocyte progenitor cell | 2.14e-35 | 67 |
macrophage dendritic cell progenitor | 5.30e-35 | 61 |
leukocyte | 4.64e-34 | 136 |
monopoietic cell | 6.32e-34 | 59 |
monocyte | 6.32e-34 | 59 |
monoblast | 6.32e-34 | 59 |
promonocyte | 6.32e-34 | 59 |
myeloid lineage restricted progenitor cell | 1.54e-31 | 66 |
nongranular leukocyte | 8.47e-28 | 115 |
defensive cell | 3.14e-27 | 48 |
phagocyte | 3.14e-27 | 48 |
hematopoietic lineage restricted progenitor cell | 2.51e-26 | 120 |
classical monocyte | 3.59e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.59e-23 | 42 |
motile cell | 4.42e-11 | 386 |
lymphocyte of B lineage | 8.65e-10 | 24 |
pro-B cell | 8.65e-10 | 24 |
mesenchymal cell | 2.57e-09 | 354 |
stem cell | 2.28e-08 | 441 |
connective tissue cell | 2.98e-08 | 361 |
somatic stem cell | 6.58e-07 | 433 |
multi fate stem cell | 9.79e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.75e-32 | 76 |
hematopoietic system | 7.47e-32 | 98 |
blood island | 7.47e-32 | 98 |
bone element | 1.69e-31 | 82 |
hemolymphoid system | 1.46e-29 | 108 |
immune system | 1.38e-28 | 93 |
skeletal element | 1.21e-25 | 90 |
skeletal system | 3.50e-24 | 100 |
musculoskeletal system | 6.41e-10 | 167 |
connective tissue | 4.46e-09 | 371 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 4.09e-15 | 51 |
immune system cancer | 4.09e-15 | 51 |
leukemia | 1.27e-14 | 39 |
myeloid leukemia | 1.19e-13 | 31 |