FFCP PHASE1:Mm9::chr19:5731697..5731733,-: Difference between revisions
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{{FFCP|EntrezGene=56390,17826|HGNC=|MCL_coexpression_id=915|UniProt=P56873,E0CYU9,Q545N1,Q9CZE1,Q9D002|association_with_transcript=0bp_to_ENSMUST00000025885,ENSMUST00000159008,ENSMUST00000159693,ENSMUST00000160852,NM_020491,uc008gfc.1,uc008gfd.1_5end|description=CAGE_peak_1_at_Fam89b_5end,CAGE_peak_1_at_Sssca1_5end|id=chr19:5731697..5731733,-|ontology_enrichment_celltype=CL:0000117!1.25e-09!23;CL:0000337!1.25e-09!23;CL:0002319!4.69e-09!43;CL:0000055!7.36e-09!50;CL:0000221!1.77e-08!44;CL:0000133!1.77e-08!44;CL:0000540!7.71e-07!33;CL:0000047!7.71e-07!33;CL:0000031!7.71e-07!33;CL:0000404!7.71e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.25e-09,23;CL:0000337,1.25e-09,23;CL:0002319,4.69e-09,43;CL:0000221,1.77e-08,44;CL:0000133,1.77e-08,44;CL:0000540,7.71e-07,33;CL:0000047,7.71e-07,33;CL:0000031,7.71e-07,33;CL:0000404,7.71e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.19e-15!73;UBERON:0005743!1.19e-15!73;UBERON:0000073!2.50e-15!75;UBERON:0001016!2.50e-15!75;UBERON:0001049!2.44e-14!52;UBERON:0005068!2.44e-14!52;UBERON:0006241!2.44e-14!52;UBERON:0007135!2.44e-14!52;UBERON:0000955!1.57e-12!50;UBERON:0006238!1.57e-12!50;UBERON:0002616!3.32e-12!49;UBERON:0002020!5.14e-12!34;UBERON:0002346!7.49e-12!71;UBERON:0003075!7.49e-12!71;UBERON:0007284!7.49e-12!71;UBERON:0003080!1.15e-10!40;UBERON:0002780!2.42e-10!39;UBERON:0001890!2.42e-10!39;UBERON:0006240!2.42e-10!39;UBERON:0002791!9.21e-10!29;UBERON:0003528!9.21e-10!29;UBERON:0001893!9.21e-10!29;UBERON:0004121!1.08e-09!102;UBERON:0000924!1.08e-09!102;UBERON:0006601!1.08e-09!102;UBERON:0000033!3.89e-09!63;UBERON:0003056!7.24e-09!49;UBERON:0000153!4.33e-08!94;UBERON:0007811!7.69e-08!86;UBERON:0000956!6.24e-07!21;UBERON:0001869!6.24e-07!21;UBERON:0000203!6.24e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.19e-15,73;UBERON:0001016,2.50e-15,75;UBERON:0000073,1.76e-14,54;UBERON:0001049,2.44e-14,52;UBERON:0005068,2.44e-14,52;UBERON:0006241,2.44e-14,52;UBERON:0007135,2.44e-14,52;UBERON:0002346,1.11e-12,64;UBERON:0003075,1.11e-12,64;UBERON:0007284,1.11e-12,64;UBERON:0000955,2.88e-12,47;UBERON:0006238,2.88e-12,47;UBERON:0002020,5.14e-12,34;UBERON:0002616,6.10e-12,46;UBERON:0003080,1.15e-10,40;UBERON:0002780,2.42e-10,39;UBERON:0001890,2.42e-10,39;UBERON:0006240,2.42e-10,39;UBERON:0004121,4.75e-10,95;UBERON:0000924,4.75e-10,95;UBERON:0006601,4.75e-10,95;UBERON:0003528,9.21e-10,29;UBERON:0002791,9.21e-10,29;UBERON:0001893,9.21e-10,29;UBERON:0010314,1.70e-09,92;UBERON:0010371,3.42e-09,73;UBERON:0003056,7.24e-09,49;UBERON:0000956,6.24e-07,21;UBERON:0001869,6.24e-07,21;UBERON:0000203,6.24e-07,21|phase1_expression=28.3463459375485,8.72438519098403,8.18998630901165,6.65421264875026,11.520601788766,24.342494427224,33.4066076051602,37.187517151174,86.16269795682,103.222456107999,124.989116804619,140.478771990787,32.6993394168603,37.7656138450069,50.9657935577964,44.9495093605414,24.4846657344851,36.4358800988765,34.5528372686462,41.1657962244089,56.3837013701593,39.2199257243497,44.6651639427579,27.8386815660528,31.4290715062023,19.5238867799107,27.1380057580217,22.4090081993325,26.0332084655232,18.3981994724749,37.4724563007465,168.918159140262,224.498647468368,63.3926724061755,38.4172654269195,40.7274881128306,32.2587582894543,5.85944283031671,17.9707129240474,12.0410461113974,4.70585190424811,4.78131839470912,9.71020706062307,51.6176953699867,54.2366582024403,52.8614646225643,98.5813093878529,69.1139745726015,50.9671943943975,59.8844089148793,41.5759672227327,50.3133975277401,24.9996083026027,25.3876749703971,23.5265659399725,34.215504992781,34.097479352712,37.6440627362533,73.0362423703148,87.2835115798854,88.1025650873589,88.7772674021126,64.9185201161132,43.6451362881479,43.5101199529469,63.2327302302029,69.5072256402699,116.802364817753,47.3861528249743,63.0477732008995,59.7322890237925,82.838785477103,81.9422286930486,62.2253260011966,61.245255980653,70.7798465689716,44.0463523997555,43.9244443013046,55.4519585055039,66.7344615914781,70.2625102866506,60.4259509845842,77.0545077243811,59.6528366633581,50.2706235185705,62.7558887058912,62.0740528284089,59.4614232182709,49.6006566332356,32.4957708459178,25.7979394944493,49.044160987939,37.3984233539263,37.2395202230094,37.6870322119648,29.5697745484241,45.2231032824241,53.174260644354,57.1529210126311,64.3078025608819,28.3095273751128,25.6652954828636,33.1246811618639,35.5533351576666,63.4318750162857,56.499250000947,62.1795067368183,27.2899472528553,28.7421050848361,43.3451046069288,49.4433181283487,41.7117705287633,35.514786577433,45.6689600874446,31.866539633776,35.6893119376278,21.5059621928905,33.9808488761792,24.7690954545965,32.3533699894818,24.9550915860245,26.183263669302,44.7340226923493,53.5788858531131,39.1665341741161,24.0129631896076,28.515999632409,75.5877441051694,28.9720117726587,59.0175119255001,55.3575729410538,56.2931497465633,62.9244039096041,41.1701886301832,63.7909296797849,51.4304803924792,34.3198656175566,28.2403823284911,50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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=56390,17826 | |||
|HGNC= | |||
|MCL_coexpression_id=915 | |||
|TSSclassifier=NA | |||
|UniProt=P56873,E0CYU9,Q545N1,Q9CZE1,Q9D002 | |||
|association_with_transcript=0bp_to_ENSMUST00000025885,ENSMUST00000159008,ENSMUST00000159693,ENSMUST00000160852,NM_020491,uc008gfc.1,uc008gfd.1_5end | |||
|cluster_id=chr19:5731697..5731733,- | |||
|description=CAGE_peak_1_at_Fam89b_5end,CAGE_peak_1_at_Sssca1_5end | |||
|id=chr19:5731697..5731733,- | |||
|ontology_enrichment_celltype=CL:0000117!1.25e-09!23;CL:0000337!1.25e-09!23;CL:0002319!4.69e-09!43;CL:0000055!7.36e-09!50;CL:0000221!1.77e-08!44;CL:0000133!1.77e-08!44;CL:0000540!7.71e-07!33;CL:0000047!7.71e-07!33;CL:0000031!7.71e-07!33;CL:0000404!7.71e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.25e-09,23;CL:0000337,1.25e-09,23;CL:0002319,4.69e-09,43;CL:0000221,1.77e-08,44;CL:0000133,1.77e-08,44;CL:0000540,7.71e-07,33;CL:0000047,7.71e-07,33;CL:0000031,7.71e-07,33;CL:0000404,7.71e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.19e-15!73;UBERON:0005743!1.19e-15!73;UBERON:0000073!2.50e-15!75;UBERON:0001016!2.50e-15!75;UBERON:0001049!2.44e-14!52;UBERON:0005068!2.44e-14!52;UBERON:0006241!2.44e-14!52;UBERON:0007135!2.44e-14!52;UBERON:0000955!1.57e-12!50;UBERON:0006238!1.57e-12!50;UBERON:0002616!3.32e-12!49;UBERON:0002020!5.14e-12!34;UBERON:0002346!7.49e-12!71;UBERON:0003075!7.49e-12!71;UBERON:0007284!7.49e-12!71;UBERON:0003080!1.15e-10!40;UBERON:0002780!2.42e-10!39;UBERON:0001890!2.42e-10!39;UBERON:0006240!2.42e-10!39;UBERON:0002791!9.21e-10!29;UBERON:0003528!9.21e-10!29;UBERON:0001893!9.21e-10!29;UBERON:0004121!1.08e-09!102;UBERON:0000924!1.08e-09!102;UBERON:0006601!1.08e-09!102;UBERON:0000033!3.89e-09!63;UBERON:0003056!7.24e-09!49;UBERON:0000153!4.33e-08!94;UBERON:0007811!7.69e-08!86;UBERON:0000956!6.24e-07!21;UBERON:0001869!6.24e-07!21;UBERON:0000203!6.24e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.19e-15,73;UBERON:0001016,2.50e-15,75;UBERON:0000073,1.76e-14,54;UBERON:0001049,2.44e-14,52;UBERON:0005068,2.44e-14,52;UBERON:0006241,2.44e-14,52;UBERON:0007135,2.44e-14,52;UBERON:0002346,1.11e-12,64;UBERON:0003075,1.11e-12,64;UBERON:0007284,1.11e-12,64;UBERON:0000955,2.88e-12,47;UBERON:0006238,2.88e-12,47;UBERON:0002020,5.14e-12,34;UBERON:0002616,6.10e-12,46;UBERON:0003080,1.15e-10,40;UBERON:0002780,2.42e-10,39;UBERON:0001890,2.42e-10,39;UBERON:0006240,2.42e-10,39;UBERON:0004121,4.75e-10,95;UBERON:0000924,4.75e-10,95;UBERON:0006601,4.75e-10,95;UBERON:0003528,9.21e-10,29;UBERON:0002791,9.21e-10,29;UBERON:0001893,9.21e-10,29;UBERON:0010314,1.70e-09,92;UBERON:0010371,3.42e-09,73;UBERON:0003056,7.24e-09,49;UBERON:0000956,6.24e-07,21;UBERON:0001869,6.24e-07,21;UBERON:0000203,6.24e-07,21 | |||
|phase1_expression=28.3463459375485,8.72438519098403,8.18998630901165,6.65421264875026,11.520601788766,24.342494427224,33.4066076051602,37.187517151174,86.16269795682,103.222456107999,124.989116804619,140.478771990787,32.6993394168603,37.7656138450069,50.9657935577964,44.9495093605414,24.4846657344851,36.4358800988765,34.5528372686462,41.1657962244089,56.3837013701593,39.2199257243497,44.6651639427579,27.8386815660528,31.4290715062023,19.5238867799107,27.1380057580217,22.4090081993325,26.0332084655232,18.3981994724749,37.4724563007465,168.918159140262,224.498647468368,63.3926724061755,38.4172654269195,40.7274881128306,32.2587582894543,5.85944283031671,17.9707129240474,12.0410461113974,4.70585190424811,4.78131839470912,9.71020706062307,51.6176953699867,54.2366582024403,52.8614646225643,98.5813093878529,69.1139745726015,50.9671943943975,59.8844089148793,41.5759672227327,50.3133975277401,24.9996083026027,25.3876749703971,23.5265659399725,34.215504992781,34.097479352712,37.6440627362533,73.0362423703148,87.2835115798854,88.1025650873589,88.7772674021126,64.9185201161132,43.6451362881479,43.5101199529469,63.2327302302029,69.5072256402699,116.802364817753,47.3861528249743,63.0477732008995,59.7322890237925,82.838785477103,81.9422286930486,62.2253260011966,61.245255980653,70.7798465689716,44.0463523997555,43.9244443013046,55.4519585055039,66.7344615914781,70.2625102866506,60.4259509845842,77.0545077243811,59.6528366633581,50.2706235185705,62.7558887058912,62.0740528284089,59.4614232182709,49.6006566332356,32.4957708459178,25.7979394944493,49.044160987939,37.3984233539263,37.2395202230094,37.6870322119648,29.5697745484241,45.2231032824241,53.174260644354,57.1529210126311,64.3078025608819,28.3095273751128,25.6652954828636,33.1246811618639,35.5533351576666,63.4318750162857,56.499250000947,62.1795067368183,27.2899472528553,28.7421050848361,43.3451046069288,49.4433181283487,41.7117705287633,35.514786577433,45.6689600874446,31.866539633776,35.6893119376278,21.5059621928905,33.9808488761792,24.7690954545965,32.3533699894818,24.9550915860245,26.183263669302,44.7340226923493,53.5788858531131,39.1665341741161,24.0129631896076,28.515999632409,75.5877441051694,28.9720117726587,59.0175119255001,55.3575729410538,56.2931497465633,62.9244039096041,41.1701886301832,63.7909296797849,51.4304803924792,34.3198656175566,28.2403823284911,50.5445516867349,28.8305342564469,55.3011882591491,69.6603376433423,49.517085696471,37.2240900054216,34.4264685705719,33.6939084349155,34.9507432607789,30.0095910057258,80.8379973498158,58.2446726916883,54.5448484908241,64.6627410661346,35.8680951501021,35.8699731517832,32.1020132796392,44.9817443009795,75.8390242298294,84.1527656265119,47.455304399064,49.088808090914,47.8433162361436,51.4977495778503,49.7163944728942,45.0590090701555,40.1094493507183,37.9030329943165,41.582377216941,37.5984402422286,37.5196457802735,34.8035023847682,34.292106437897,37.4271967808851,46.3250743264117,31.8069212462081,55.3062564723655,54.7452537857793,7.59963200862735,30.6762657329711,67.1857989185987,53.6466711997613,49.2273702250396,34.8912497598383,27.5748774367639,25.870685151308,18.506633400236,26.6812306652898,19.3528110776208,19.6966907320739,23.7856186285327,16.178749355776,21.3976669375947,17.922714592893,85.3505554288868,48.3271208339153,40.574784842309,38.0827983070738,38.2086399720223,30.7896249318498,27.4446571119277,27.3078773762264,32.1847392074818,34.4278087341823,38.2423888942422,64.5690559121284,67.2231763287154,60.2630461191408,35.500521242988,36.6589282823674,35.9022451011802,34.2358403566465,32.5891805817821,31.8491239298175,14.3768206527355,21.9563159124417,24.9630138491648,33.3404118890188,40.3644180424302,27.4992807177119,24.9416806724916,72.1962278845547,49.8672827912599,45.8311731593008,44.1217666782384,28.9785825374341,33.3261097240419,21.0744339686423,24.1181770482472,20.1532867580385,21.8453033060757,17.3695113598682,20.5495128420416,20.3955172599931,22.6186925908908,35.8977751320348,39.8329061145419,38.9070812289673,57.3165606256417,41.0240903072711,72.7871157472439,42.667586697539,45.1176753765247,47.2430880598933,46.100607114819,39.6688204601236,36.9845798976774,31.7045714483492,41.2906915708392,37.7010056705592,32.8088855695615,58.8018009051907,40.7368044547731,52.1732218745058,42.6763833506369,33.8188752093698,41.1509928853885,70.1636038487896,58.6507700511617,49.6031359758012,54.0402463971814,53.8011508901873,33.5956781118688,35.989839218273,35.6497378384721,38.5564844681696,46.3841877729995,35.0660847043835,44.2571487479924,50.7772285168295,67.9133089859461,40.7240366560025,47.8818630834139,38.8844022372514,36.2007845324666,47.1920671127629,30.5073220482823,24.784352291067,25.5812941743756,36.4398619000671,24.7040572844735,26.7789386681012,31.1561817848186,33.1564617485024,18.0718118710507,48.396003824743,39.1294317027083,40.0390523848652,37.4092945286818,33.9063222608444,28.4323993659732,29.5123843436414,24.3069154891213,24.6314556089638,26.2579950228405,49.6428721367859,71.650102546127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| |||
|short_description=p1@Fam89b,p1@Sssca1 | |||
}} |
Latest revision as of 00:38, 26 September 2015
Short description: | p1@Fam89b, p1@Sssca1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Fam89b_5end, CAGE_peak_1_at_Sssca1_5end |
Coexpression cluster: | MCL_coexpression_mm9:915 |
Association with transcript: | 0bp_to_ENSMUST00000025885, ENSMUST00000159008, ENSMUST00000159693, ENSMUST00000160852, NM_020491, uc008gfc.1, uc008gfd.1_5end |
EntrezGene: | 56390,17826 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.25e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.25e-09 | 23 |
neural cell | 4.69e-09 | 43 |
ectodermal cell | 1.77e-08 | 44 |
neurectodermal cell | 1.77e-08 | 44 |
neuron | 7.71e-07 | 33 |
neuronal stem cell | 7.71e-07 | 33 |
neuroblast | 7.71e-07 | 33 |
electrically signaling cell | 7.71e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.19e-15 | 73 |
nervous system | 2.50e-15 | 75 |
regional part of nervous system | 1.76e-14 | 54 |
neural tube | 2.44e-14 | 52 |
neural rod | 2.44e-14 | 52 |
future spinal cord | 2.44e-14 | 52 |
neural keel | 2.44e-14 | 52 |
neurectoderm | 1.11e-12 | 64 |
neural plate | 1.11e-12 | 64 |
presumptive neural plate | 1.11e-12 | 64 |
brain | 2.88e-12 | 47 |
future brain | 2.88e-12 | 47 |
gray matter | 5.14e-12 | 34 |
regional part of brain | 6.10e-12 | 46 |
anterior neural tube | 1.15e-10 | 40 |
regional part of forebrain | 2.42e-10 | 39 |
forebrain | 2.42e-10 | 39 |
future forebrain | 2.42e-10 | 39 |
ectoderm-derived structure | 4.75e-10 | 95 |
ectoderm | 4.75e-10 | 95 |
presumptive ectoderm | 4.75e-10 | 95 |
brain grey matter | 9.21e-10 | 29 |
regional part of telencephalon | 9.21e-10 | 29 |
telencephalon | 9.21e-10 | 29 |
structure with developmental contribution from neural crest | 1.70e-09 | 92 |
ecto-epithelium | 3.42e-09 | 73 |
pre-chordal neural plate | 7.24e-09 | 49 |
cerebral cortex | 6.24e-07 | 21 |
cerebral hemisphere | 6.24e-07 | 21 |
pallium | 6.24e-07 | 21 |