FFCP PHASE1:Hg19::chr6:160114497..160114513,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6648 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11180 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-137bp_to_ENST00000538183_5end | |||
|cluster_id=chr6:160114497..160114513,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_9_at_SOD2_5end | |||
|id=chr6:160114497..160114513,- | |||
|ontology_enrichment_celltype=CL:0002057!3.19e-18!42;CL:0000860!4.90e-17!45;CL:0002194!7.71e-13!63;CL:0000576!7.71e-13!63;CL:0000040!7.71e-13!63;CL:0000559!7.71e-13!63;CL:0000766!4.96e-12!76;CL:0002009!1.26e-11!65;CL:0000839!2.55e-10!70;CL:0000557!7.23e-09!71 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.14e-27;33!CL:0002057;5.14e-27;33!CL:0000473;2.45e-23;39!CL:0000234;2.45e-23;39!CL:0000576;2.89e-14;48!CL:0000766;1.08e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.82e-27,48;CL:0000234,2.82e-27,48;CL:0000860,2.67e-26,42;CL:0002057,2.67e-26,42;CL:0000766,1.12e-21,72;CL:0002194,3.37e-20,59;CL:0000576,3.37e-20,59;CL:0000040,3.37e-20,59;CL:0000559,3.37e-20,59;CL:0002009,4.25e-19,61;CL:0000839,1.17e-16,66;CL:0000557,3.24e-16,67;CL:0000048,9.30e-12,427;CL:0000723,4.05e-11,433;CL:0000034,1.20e-10,441;CL:0000763,1.12e-09,108;CL:0000049,1.12e-09,108;CL:0002320,2.52e-07,361;CL:0000134,2.58e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;9.91e-20;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.53e-13!167;UBERON:0000926!2.25e-13!448;UBERON:0004120!2.25e-13!448;UBERON:0006603!2.25e-13!448;UBERON:0002193!1.87e-12!112;UBERON:0000468!5.04e-11!659;UBERON:0000467!3.65e-10!625;UBERON:0000480!3.92e-10!626;UBERON:0002390!7.47e-10!102;UBERON:0003061!7.47e-10!102;UBERON:0002405!1.80e-09!115;UBERON:0003081!2.01e-09!216;UBERON:0000922!3.17e-08!612;UBERON:0002050!4.68e-08!605;UBERON:0005423!4.68e-08!605;UBERON:0002371!4.70e-08!80;UBERON:0000923!6.69e-08!604;UBERON:0005291!6.69e-08!604;UBERON:0006598!6.69e-08!604;UBERON:0002532!6.69e-08!604;UBERON:0007023!1.77e-07!115;UBERON:0001474!3.49e-07!86;UBERON:0002385!3.63e-07!63;UBERON:0001015!3.63e-07!63;UBERON:0000383!3.63e-07!63;UBERON:0001134!7.60e-07!61;UBERON:0002036!7.60e-07!61;UBERON:0003082!7.60e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.43e-08;15!UBERON:0000179;8.43e-08;15!UBERON:0000463;8.43e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,4.14e-22,108;UBERON:0002390,1.66e-19,98;UBERON:0003061,1.66e-19,98;UBERON:0000926,2.46e-18,315;UBERON:0004120,2.46e-18,315;UBERON:0006603,2.46e-18,315;UBERON:0002204,2.99e-17,167;UBERON:0002371,3.51e-16,76;UBERON:0002405,4.27e-16,93;UBERON:0001474,5.33e-14,82;UBERON:0003081,8.13e-14,203;UBERON:0004765,5.87e-13,90;UBERON:0001434,7.84e-13,100;UBERON:0000178,8.59e-08,15;UBERON:0000179,8.59e-08,15;UBERON:0000463,8.59e-08,15;UBERON:0002384,7.31e-07,371 | |||
|phase1_expression=0.181678379270557,1.49870366723688,2.53717927372748,0,0,1.74467704820074,2.53299878168311,1.89515962028049,1.30592814099919,0,0.697801167972428,0,0,0.37129905888014,0.662794751455832,1.34465029290355,3.61616716814386,1.46062018077475,3.41552959153355,0.246242116153576,0,0,0.286235987131057,0.410623275218653,0.251085279189606,0,0.0821005894499457,0.157421562627358,0,0,1.39334510984468,0,0,0,0,0,0,3.87796785972314,8.02177789880567,6.94434786290726,0.447830948479849,1.94336199611388,0.77272670290256,2.90796477559129,1.88937971844405,2.91100873425379,10.2268776238501,6.57868620834921,9.91060386864331,17.8369283239733,7.42866048934392,12.0605937243178,25.1664346937732,12.9096936716765,31.1480919166986,5.64727018627814,4.09359225086769,6.06753408001728,18.977201326996,14.1208771913481,19.8194508997703,6.59702600373432,3.78980949481101,5.11469700639233,28.4405053856012,30.0714169086304,51.6942466666327,6.53246529667532,6.77927793946262,8.03598725408932,29.0591761264017,14.7311054395026,27.2157653199161,0.211255286311942,0.637812899895131,0.209658645508376,0,0.750884464207532,0.64290234678832,0.285012743741249,0.19891667719909,0.91332076882317,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0.393419540227666,0,0.205601498999509,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0.579606171470105,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0.267440195783507,0,2.43806866313962,0.670700859703636,0,1.44575660953827,1.00267582127178,2.75208386025565,0.795285947051099,5.83961844363163,0.283604451492204,0.443458794925128,0.175669571386252,0.851363990735132,0.364295288292542,1.11235332835329,0.649094787309367,0,0.132957960518865,0.238490624305342,0,0,0.198762407366705,0,0,0,0,0,0,0.258416759169329,2.13459757612026,0.66944122552934,2.81980521976403,0.760272105718513,0.732186172644509,0.367663080345869,0.81014194788176,0.17859945656816,0.22452937262617,0,0,0.949265659568129,0.183201743930407,43.4875377539009,93.0672633955981,0,0,0.379891534993739,1.72131935057184,0.286836620748814,0,0,2.1349799145941,1.48000529050296,0,2.69421344139376,0.326923806226917,0,0,0,1.5608003841516,0.570471821544449,0.896692083310806,0,0,0.140450806702248,0.204154171254893,0.122834317311768,0.206651562351531,3.56400857184616,3.95627086845691,0.910161361938026,1.43723628363248,0,0,0.277064115484183,0,0,2.70428506031874,0.453728732640084,0.179389635688862,0.213557388818567,0.847727604638247,0.300091096084402,0.103052529238439,0.257640540045629,0.744467425326359,0,0,0,0.644349290496095,0,0,0.10075209822764,0.169560592310488,0.386521706326594,0.272746120590835,0,0,0.397589304964456,0.116193942869518,0.621966330092223,1.00928340350251,0,7.8224766164908,3.85944562915731,0,5.57241513638375,2.88751792667834,0.236613600079688,0.168584690078102,0,0.220587945464788,0.435758888184812,0.71181185733329,0.269662616320329,0.196221465125346,0,0,0,0.4115740113314,0,0,5.89696330006576,4.72631925345123,0,0.122988438543114,0,0.329250856225877,0,0.201057944823262,0.185176890317059,0,0,0,0,0.352226082707465,10.1056513432752,9.25971025153221,13.5080448086565,0,0,1.96973604869918,3.7440682422278,2.67536092119711,0.93733833986777,0.16798212819886,0.425325291727159,0.447792613514241,0.290633938513962,0,0,0,0.207328115540772,0,0,0.126995788584338,0,0,0,0.411309970813294,0.300343057843917,0.857479297891735,0,0.43596006883328,0.07333828582095,1.80980402060889,3.57656445851882,0,0.531876233169741,0,1.02882949704857,0,0,0.714889968290738,0,0,0.65147236858747,0.355391948742546,0,5.12446941001296,2.61460037580088,1.89948683245908,0,1.00451418286425,0,0.239624855491583,0,1.42636905040718,2.31650090668127,3.08214483825575,2.32779252211864,0.112085143993527,0,0,0.641715181398742,0.508189248444927,0,0.773288812777695,0.837581326671744,0,29.2112739339401,17.9496875522415,25.2793463195982,1.71768088406796,0.500170521059677,1.08506009479894,1.24782516918484,0.178428988797162,0.473107245101804,0.585707074963566,1.80567659836631,0,1.03473071292505,0,0,1.73767228936166,0.195801157462741,0,0.206768026122887,2.15714200818617,1.38745825144478,0.303127571446259,0,0.30239029332968,0.744323423456331,0.460385919864187,0.280660094433074,1.02511319404561,0,0.64341568457443,0,1.23367755042124,0.710246901252508,0.739144404124282,1.03850885836724,0.697262270759755,0,0.601519410909855,0.552485933615378,0.34444334449382,1.45672934405374,3.54035920390445,0.902399225814824,0.231046011313244,0,1.46139224653261,0.527758144464379,0,0.170093705276516,0.215915916102139,0,0.270946437543853,0.501689773854853,0.509752546090077,0.831076008928724,0.447749509444357,0.219259876645935,0.784306353074702,0.256450125116389,0.328014645699706,0.976135183992909,1.854738209659,0.0915694648183434,0.577566499444116,1.72279661398852,0,0,2.32009723901093,0.462145851343933,0.307007349452259,0.689182862422653,2.25582514223375,0.725083469571143,0.852266274161009,0.356128142586949,0.495854746082934,0.576570202095319,0,0.2023155617111,0.464845549297286,0,0.6970372701606,1.23213432070436,0.532306030317022,2.609798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| |||
|short_description=p9@SOD2 | |||
}} |
Latest revision as of 14:50, 16 September 2015
Short description: | p9@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SOD2_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -137bp_to_ENST00000538183_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.82e-27 | 48 |
phagocyte | 2.82e-27 | 48 |
classical monocyte | 2.67e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.67e-26 | 42 |
myeloid leukocyte | 1.12e-21 | 72 |
monopoietic cell | 3.37e-20 | 59 |
monocyte | 3.37e-20 | 59 |
monoblast | 3.37e-20 | 59 |
promonocyte | 3.37e-20 | 59 |
macrophage dendritic cell progenitor | 4.25e-19 | 61 |
myeloid lineage restricted progenitor cell | 1.17e-16 | 66 |
granulocyte monocyte progenitor cell | 3.24e-16 | 67 |
multi fate stem cell | 9.30e-12 | 427 |
somatic stem cell | 4.05e-11 | 433 |
stem cell | 1.20e-10 | 441 |
myeloid cell | 1.12e-09 | 108 |
common myeloid progenitor | 1.12e-09 | 108 |
connective tissue cell | 2.52e-07 | 361 |
mesenchymal cell | 2.58e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 4.14e-22 | 108 |
hematopoietic system | 1.66e-19 | 98 |
blood island | 1.66e-19 | 98 |
mesoderm | 2.46e-18 | 315 |
mesoderm-derived structure | 2.46e-18 | 315 |
presumptive mesoderm | 2.46e-18 | 315 |
musculoskeletal system | 2.99e-17 | 167 |
bone marrow | 3.51e-16 | 76 |
immune system | 4.27e-16 | 93 |
bone element | 5.33e-14 | 82 |
lateral plate mesoderm | 8.13e-14 | 203 |
skeletal element | 5.87e-13 | 90 |
skeletal system | 7.84e-13 | 100 |
blood | 8.59e-08 | 15 |
haemolymphatic fluid | 8.59e-08 | 15 |
organism substance | 8.59e-08 | 15 |
connective tissue | 7.31e-07 | 371 |