FFCP PHASE1:Mm9::chr3:96531454..96531495,+: Difference between revisions
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{{FFCP|EntrezGene=67845|HGNC=|MCL_coexpression_id=2728|UniProt=Q9D0C1|association_with_transcript=-38bp_to_ENSMUST00000029740,NM_026406,uc008qoe.2,uc012cuc.1_5end|description=CAGE_peak_3_at_Rnf115_5end|id=chr3:96531454..96531495,+|ontology_enrichment_celltype=CL:0000117!1.97e-12!23;CL:0000337!1.97e-12!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.60e-12,23;CL:0000337,1.60e-12,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!4.79e-20!94;UBERON:0007811!1.65e-18!86;UBERON:0002020!6.29e-14!34;UBERON:0000033!2.20e-13!63;UBERON:0001049!2.80e-13!52;UBERON:0005068!2.80e-13!52;UBERON:0006241!2.80e-13!52;UBERON:0007135!2.80e-13!52;UBERON:0003056!1.34e-12!49;UBERON:0000955!1.17e-11!50;UBERON:0006238!1.17e-11!50;UBERON:0002616!2.77e-11!49;UBERON:0002346!3.46e-11!71;UBERON:0003075!3.46e-11!71;UBERON:0007284!3.46e-11!71;UBERON:0002791!5.00e-11!29;UBERON:0003528!5.00e-11!29;UBERON:0001893!5.00e-11!29;UBERON:0003080!1.33e-10!40;UBERON:0002780!4.06e-10!39;UBERON:0001890!4.06e-10!39;UBERON:0006240!4.06e-10!39;UBERON:0001017!1.52e-09!73;UBERON:0005743!1.52e-09!73;UBERON:0000073!3.73e-09!75;UBERON:0001016!3.73e-09!75;UBERON:0004121!5.86e-09!102;UBERON:0000924!5.86e-09!102;UBERON:0006601!5.86e-09!102;UBERON:0000956!9.63e-09!21;UBERON:0001869!9.63e-09!21;UBERON:0000203!9.63e-09!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.01e-14,54;UBERON:0002020,3.38e-14,34;UBERON:0010371,5.71e-14,73;UBERON:0002346,6.95e-14,64;UBERON:0003075,6.95e-14,64;UBERON:0007284,6.95e-14,64;UBERON:0001049,1.60e-13,52;UBERON:0005068,1.60e-13,52;UBERON:0006241,1.60e-13,52;UBERON:0007135,1.60e-13,52;UBERON:0003056,7.92e-13,49;UBERON:0003528,2.90e-11,29;UBERON:0002791,2.90e-11,29;UBERON:0001893,2.90e-11,29;UBERON:0000955,5.61e-11,47;UBERON:0006238,5.61e-11,47;UBERON:0003080,8.23e-11,40;UBERON:0002616,1.32e-10,46;UBERON:0004121,1.72e-10,95;UBERON:0000924,1.72e-10,95;UBERON:0006601,1.72e-10,95;UBERON:0002780,2.55e-10,39;UBERON:0001890,2.55e-10,39;UBERON:0006240,2.55e-10,39;UBERON:0001017,1.84e-09,73;UBERON:0001016,4.50e-09,75;UBERON:0000956,5.80e-09,21;UBERON:0001869,5.80e-09,21;UBERON:0000203,5.80e-09,21;UBERON:0000153,8.73e-08,43;UBERON:0007811,6.59e-07,36|phase1_expression=3.52327463630547,0,0,0,0,1.17515490338323,1.16806320297763,2.96983643915625,5.06839399746,5.38348410540585,4.79410311031414,6.22222840163624,2.22560948910567,2.18551006047494,1.99865857089398,3.03712901084739,2.79824751251259,6.46697438984387,6.03303507865251,6.36584477697045,3.06155844543851,2.6808556824239,4.17919662622297,0.799962113967033,0.45881856213434,0,0,0,0.950117097281869,0.504060259519861,0.886922042621219,3.81018404075779,2.46025915033828,0,2.3108129580102,1.99481574430191,2.45003227514843,3.76678467663217,3.1253413780952,1.0470474879476,2.94115744015507,2.04913645487534,3.88408282424923,0,0.405507724878058,0.183546752161682,0.782391344348039,0,0.219686182734472,0,0.279972843250725,1.43752564364972,7.71799987865587,2.90144856804538,2.35265659399725,0.257259436035947,0,0.515672092277442,16.1853168687678,10.0508286061686,17.1134478946668,0.338844532069132,0.889294796111139,0.449949858640699,0,0,0.599200221036809,1.15265491596466,14.9313041724208,13.095576018174,15.984697062705,11.1403883917483,8.1721360152097,10.9016811301309,12.172374819316,12.8690630125403,4.40463523997555,6.00130489000382,6.29786786350598,15.6944682398931,17.3826522844578,15.106487746146,2.23346399201105,4.50210088025344,4.12555268997387,9.1334861496837,10.6778760599327,17.335148461753,1.81742863999642,1.81371744256285,0.869593466105033,0,1.3599426674155,0,0,0,1.26399978118577,0.511290967734173,0.779358013808606,0.35333957451034,4.08445917352373,0,5.09610479413291,0,1.5154372870785,1.52015919285059,2.02209778005913,1.1418387971906,4.91981978929626,0.742210695324124,2.25530924795977,1.21786191324856,1.38369298353635,2.11011696773672,2.70454026412121,0.753999547978053,0.988779870937496,0.578397427679647,3.5384422077995,1.7794353494215,1.32504911076236,1.45462575940567,0,7.02673912827713,5.65506108396329,0.766371165625774,8.74650408893218,4.19931911695385,5.84523044536098,8.68785708547972,3.20250421973039,8.54449594367478,8.51739168942155,10.2286182932132,5.40248915854856,5.353961681236,2.64782346010822,1.49288364732112,2.52722758433675,3.15662783829711,3.90361328888111,3.21862946206862,3.78130472591233,5.57607825992146,6.66757691683013,7.43059577652129,6.93392761741993,4.65666067330228,5.6047678162539,6.42960672570586,4.92663147659057,2.84954452155847,3.05851974148158,3.1342694986995,3.2925141825271,3.18454826909589,3.51106593656617,4.88961023517959,9.37739548005456,2.48550927042602,2.11073453982987,2.52086886045421,1.65721314909647,0.983821158737019,1.69693824176116,1.62773761325285,0.804820204198858,1.75148013550754,1.48103864922132,1.31333971263276,0.891756905004413,1.16959989940266,0.439100230582101,0.939444931322602,8.41159794256509,13.4805042216863,0,1.58670339998127,2.77274725695804,3.71578674976702,2.31961430379768,2.21851877085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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=67845 | |||
|HGNC= | |||
|MCL_coexpression_id=2728 | |||
|TSSclassifier=NA | |||
|UniProt=Q9D0C1 | |||
|association_with_transcript=-38bp_to_ENSMUST00000029740,NM_026406,uc008qoe.2,uc012cuc.1_5end | |||
|cluster_id=chr3:96531454..96531495,+ | |||
|description=CAGE_peak_3_at_Rnf115_5end | |||
|id=chr3:96531454..96531495,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.97e-12!23;CL:0000337!1.97e-12!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.60e-12,23;CL:0000337,1.60e-12,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!4.79e-20!94;UBERON:0007811!1.65e-18!86;UBERON:0002020!6.29e-14!34;UBERON:0000033!2.20e-13!63;UBERON:0001049!2.80e-13!52;UBERON:0005068!2.80e-13!52;UBERON:0006241!2.80e-13!52;UBERON:0007135!2.80e-13!52;UBERON:0003056!1.34e-12!49;UBERON:0000955!1.17e-11!50;UBERON:0006238!1.17e-11!50;UBERON:0002616!2.77e-11!49;UBERON:0002346!3.46e-11!71;UBERON:0003075!3.46e-11!71;UBERON:0007284!3.46e-11!71;UBERON:0002791!5.00e-11!29;UBERON:0003528!5.00e-11!29;UBERON:0001893!5.00e-11!29;UBERON:0003080!1.33e-10!40;UBERON:0002780!4.06e-10!39;UBERON:0001890!4.06e-10!39;UBERON:0006240!4.06e-10!39;UBERON:0001017!1.52e-09!73;UBERON:0005743!1.52e-09!73;UBERON:0000073!3.73e-09!75;UBERON:0001016!3.73e-09!75;UBERON:0004121!5.86e-09!102;UBERON:0000924!5.86e-09!102;UBERON:0006601!5.86e-09!102;UBERON:0000956!9.63e-09!21;UBERON:0001869!9.63e-09!21;UBERON:0000203!9.63e-09!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.01e-14,54;UBERON:0002020,3.38e-14,34;UBERON:0010371,5.71e-14,73;UBERON:0002346,6.95e-14,64;UBERON:0003075,6.95e-14,64;UBERON:0007284,6.95e-14,64;UBERON:0001049,1.60e-13,52;UBERON:0005068,1.60e-13,52;UBERON:0006241,1.60e-13,52;UBERON:0007135,1.60e-13,52;UBERON:0003056,7.92e-13,49;UBERON:0003528,2.90e-11,29;UBERON:0002791,2.90e-11,29;UBERON:0001893,2.90e-11,29;UBERON:0000955,5.61e-11,47;UBERON:0006238,5.61e-11,47;UBERON:0003080,8.23e-11,40;UBERON:0002616,1.32e-10,46;UBERON:0004121,1.72e-10,95;UBERON:0000924,1.72e-10,95;UBERON:0006601,1.72e-10,95;UBERON:0002780,2.55e-10,39;UBERON:0001890,2.55e-10,39;UBERON:0006240,2.55e-10,39;UBERON:0001017,1.84e-09,73;UBERON:0001016,4.50e-09,75;UBERON:0000956,5.80e-09,21;UBERON:0001869,5.80e-09,21;UBERON:0000203,5.80e-09,21;UBERON:0000153,8.73e-08,43;UBERON:0007811,6.59e-07,36 | |||
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| |||
|short_description=p3@Rnf115 | |||
}} |
Latest revision as of 00:43, 26 September 2015
Short description: | p3@Rnf115 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rnf115_5end |
Coexpression cluster: | MCL_coexpression_mm9:2728 |
Association with transcript: | -38bp_to_ENSMUST00000029740, NM_026406, uc008qoe.2, uc012cuc.1_5end |
EntrezGene: | Rnf115 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.60e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.60e-12 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.01e-14 | 54 |
gray matter | 3.38e-14 | 34 |
ecto-epithelium | 5.71e-14 | 73 |
neurectoderm | 6.95e-14 | 64 |
neural plate | 6.95e-14 | 64 |
presumptive neural plate | 6.95e-14 | 64 |
neural tube | 1.60e-13 | 52 |
neural rod | 1.60e-13 | 52 |
future spinal cord | 1.60e-13 | 52 |
neural keel | 1.60e-13 | 52 |
pre-chordal neural plate | 7.92e-13 | 49 |
brain grey matter | 2.90e-11 | 29 |
regional part of telencephalon | 2.90e-11 | 29 |
telencephalon | 2.90e-11 | 29 |
brain | 5.61e-11 | 47 |
future brain | 5.61e-11 | 47 |
anterior neural tube | 8.23e-11 | 40 |
regional part of brain | 1.32e-10 | 46 |
ectoderm-derived structure | 1.72e-10 | 95 |
ectoderm | 1.72e-10 | 95 |
presumptive ectoderm | 1.72e-10 | 95 |
regional part of forebrain | 2.55e-10 | 39 |
forebrain | 2.55e-10 | 39 |
future forebrain | 2.55e-10 | 39 |
central nervous system | 1.84e-09 | 73 |
nervous system | 4.50e-09 | 75 |
cerebral cortex | 5.80e-09 | 21 |
cerebral hemisphere | 5.80e-09 | 21 |
pallium | 5.80e-09 | 21 |
anterior region of body | 8.73e-08 | 43 |
craniocervical region | 6.59e-07 | 36 |