FFCP PHASE1:Hg19::chrX:13397499..13397513,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=4560 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-40bp_to_ENST00000388829_5end | |||
|cluster_id=chrX:13397499..13397513,- | |||
|coexpression_cluster_id=C1424 | |||
|description=CAGE_peak_1_at_GPX1P1_5end | |||
|id=chrX:13397499..13397513,- | |||
|ontology_enrichment_celltype=CL:0000557!4.04e-26!71;CL:0000839!1.94e-25!70;CL:0002009!6.30e-25!65;CL:0002194!7.49e-24!63;CL:0000576!7.49e-24!63;CL:0000040!7.49e-24!63;CL:0000559!7.49e-24!63;CL:0002057!4.06e-22!42;CL:0000766!1.37e-20!76;CL:0000860!1.78e-20!45;CL:0000763!5.39e-19!112;CL:0000049!5.39e-19!112;CL:0002371!1.98e-17!591;CL:0000144!3.04e-17!625;CL:0000003!3.27e-17!722;CL:0000012!2.02e-14!682;CL:0000548!1.60e-13!679;CL:0000004!1.60e-13!679;CL:0000255!1.60e-13!679;CL:0000034!8.61e-11!444;CL:0000723!3.29e-10!436;CL:0000063!3.40e-10!578;CL:0000048!3.90e-10!430;CL:0000222!2.02e-07!119;CL:0002320!3.50e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.16e-21;33!CL:0002057;8.16e-21;33!CL:0000473;7.65e-20;39!CL:0000234;7.65e-20;39!CL:0000576;4.84e-16;48!CL:0000766;3.41e-11;69!CL:0000763;2.43e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,1.24e-29,67;CL:0000839,6.86e-29,66;CL:0002009,3.77e-28,61;CL:0002194,5.40e-27,59;CL:0000576,5.40e-27,59;CL:0000040,5.40e-27,59;CL:0000559,5.40e-27,59;CL:0000473,2.54e-26,48;CL:0000234,2.54e-26,48;CL:0000766,4.94e-24,72;CL:0000860,2.75e-23,42;CL:0002057,2.75e-23,42;CL:0000763,7.10e-23,108;CL:0000049,7.10e-23,108;CL:0000034,7.72e-12,441;CL:0000723,2.77e-11,433;CL:0000048,3.06e-11,427;CL:0002320,1.30e-08,361;CL:0000134,6.88e-08,354;CL:0002031,9.44e-08,120;CL:0002032,3.07e-07,161;CL:0000837,3.07e-07,161;CL:0000037,3.16e-07,168;CL:0000222,3.17e-07,121;CL:0000988,8.04e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002057;4.07e-17;42!CL:0000049;3.13e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.21e-24!80;UBERON:0002193!3.59e-21!112;UBERON:0004765!3.93e-21!101;UBERON:0001434!3.93e-21!101;UBERON:0001474!4.87e-21!86;UBERON:0002390!5.31e-21!102;UBERON:0003061!5.31e-21!102;UBERON:0003081!6.22e-19!216;UBERON:0002204!8.06e-19!167;UBERON:0002405!2.54e-16!115;UBERON:0000926!1.81e-08!448;UBERON:0004120!1.81e-08!448;UBERON:0006603!1.81e-08!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.36e-28,76;UBERON:0004765,1.66e-26,90;UBERON:0001434,1.54e-24,100;UBERON:0001474,6.48e-24,82;UBERON:0002193,7.74e-23,108;UBERON:0002405,1.08e-22,93;UBERON:0002390,1.36e-22,98;UBERON:0003061,1.36e-22,98;UBERON:0002204,2.56e-20,167;UBERON:0003081,2.53e-18,203;UBERON:0000926,2.46e-12,315;UBERON:0004120,2.46e-12,315;UBERON:0006603,2.46e-12,315;UBERON:0002384,8.31e-08,371 | |||
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| |||
|short_description=p1@GPX1P1 | |||
}} |
Latest revision as of 13:12, 19 September 2015
Short description: | p1@GPX1P1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GPX1P1_5end |
Coexpression cluster: | C1424_Monocytederived_CD14_mesenchymal_serous_Aortic_Lymphatic_Olfactory |
Association with transcript: | -40bp_to_ENST00000388829_5end |
EntrezGene: | NA |
HGNC: | 4560 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 1.24e-29 | 67 |
myeloid lineage restricted progenitor cell | 6.86e-29 | 66 |
macrophage dendritic cell progenitor | 3.77e-28 | 61 |
monopoietic cell | 5.40e-27 | 59 |
monocyte | 5.40e-27 | 59 |
monoblast | 5.40e-27 | 59 |
promonocyte | 5.40e-27 | 59 |
defensive cell | 2.54e-26 | 48 |
phagocyte | 2.54e-26 | 48 |
myeloid leukocyte | 4.94e-24 | 72 |
classical monocyte | 2.75e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.75e-23 | 42 |
myeloid cell | 7.10e-23 | 108 |
common myeloid progenitor | 7.10e-23 | 108 |
stem cell | 7.72e-12 | 441 |
somatic stem cell | 2.77e-11 | 433 |
multi fate stem cell | 3.06e-11 | 427 |
connective tissue cell | 1.30e-08 | 361 |
mesenchymal cell | 6.88e-08 | 354 |
hematopoietic lineage restricted progenitor cell | 9.44e-08 | 120 |
hematopoietic oligopotent progenitor cell | 3.07e-07 | 161 |
hematopoietic multipotent progenitor cell | 3.07e-07 | 161 |
hematopoietic stem cell | 3.16e-07 | 168 |
mesodermal cell | 3.17e-07 | 121 |
hematopoietic cell | 8.04e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.36e-28 | 76 |
skeletal element | 1.66e-26 | 90 |
skeletal system | 1.54e-24 | 100 |
bone element | 6.48e-24 | 82 |
hemolymphoid system | 7.74e-23 | 108 |
immune system | 1.08e-22 | 93 |
hematopoietic system | 1.36e-22 | 98 |
blood island | 1.36e-22 | 98 |
musculoskeletal system | 2.56e-20 | 167 |
lateral plate mesoderm | 2.53e-18 | 203 |
mesoderm | 2.46e-12 | 315 |
mesoderm-derived structure | 2.46e-12 | 315 |
presumptive mesoderm | 2.46e-12 | 315 |
connective tissue | 8.31e-08 | 371 |