FFCP PHASE1:Mm9::chr7:149646728..149646737,+: Difference between revisions
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{{FFCP|EntrezGene=16985|HGNC=|MCL_coexpression_id=3|UniProt=P19973|association_with_transcript=-13bp_to_ENSMUST00000018963_5end|description=CAGE_peak_5_at_Lsp1_5end|id=chr7:149646728..149646737,+|ontology_enrichment_celltype=CL:0000988!4.60e-09!32;CL:0002032!4.60e-09!32;CL:0000037!4.60e-09!32;CL:0000566!4.60e-09!32;CL:0000837!4.60e-09!32;CL:0002031!2.82e-08!25;CL:0000838!4.58e-08!12;CL:0000738!8.79e-08!17;CL:0002087!8.79e-08!17;CL:0000084!1.53e-07!11;CL:0000827!1.53e-07!11;CL:0000542!4.40e-07!13;CL:0000051!4.40e-07!13|ontology_enrichment_celltype_v019_2=CL:0000988,2.01e-12,32;CL:0002032,2.01e-12,32;CL:0000037,2.01e-12,32;CL:0000837,2.01e-12,32;CL:0000838,2.44e-12,12;CL:0000738,1.02e-11,17;CL:0002087,1.02e-11,17;CL:0002031,1.25e-11,25;CL:0000084,3.14e-11,11;CL:0000827,3.14e-11,11;CL:0000542,3.19e-11,13;CL:0000051,3.19e-11,13;CL:0000791,1.30e-08,9;CL:0000789,1.30e-08,9;CL:0002420,1.30e-08,9;CL:0002419,1.30e-08,9;CL:0000790,1.30e-08,9;CL:0002320,2.53e-07,46;CL:0000134,2.53e-07,46;CL:0000624,3.51e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0060100,4.98e-07,3;DOID:4045,4.98e-07,3|ontology_enrichment_uberon=UBERON:0002193!8.33e-19!48;UBERON:0002390!4.10e-17!45;UBERON:0003061!4.10e-17!45;UBERON:0004177!1.93e-14!29;UBERON:0002405!4.98e-13!70;UBERON:0003408!9.04e-12!24;UBERON:0002370!2.34e-11!23;UBERON:0000974!2.34e-11!23;UBERON:0004807!2.34e-11!23;UBERON:0005058!2.34e-11!23;UBERON:0003351!2.34e-11!23;UBERON:0009113!2.34e-11!23;UBERON:0003295!2.34e-11!23;UBERON:0009722!2.34e-11!23;UBERON:0005562!2.34e-11!23;UBERON:0007690!2.34e-11!23;UBERON:0006562!1.65e-10!24;UBERON:0001557!1.65e-10!24;UBERON:0001042!1.65e-10!24;UBERON:0008814!1.65e-10!24;UBERON:0009145!1.65e-10!24;UBERON:0000072!2.17e-08!27;UBERON:0003081!2.27e-08!88;UBERON:0005057!2.51e-08!51;UBERON:0001004!3.10e-07!42;UBERON:0000065!6.94e-07!41|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.38e-24,29;UBERON:0005057,2.38e-24,29;UBERON:0002193,2.49e-23,48;UBERON:0002405,2.49e-23,48;UBERON:0002370,1.03e-21,23;UBERON:0000974,1.03e-21,23;UBERON:0004807,1.03e-21,23;UBERON:0005058,1.03e-21,23;UBERON:0003351,1.03e-21,23;UBERON:0009113,1.03e-21,23;UBERON:0003295,1.03e-21,23;UBERON:0009722,1.03e-21,23;UBERON:0005562,1.03e-21,23;UBERON:0007690,1.03e-21,23;UBERON:0002390,1.07e-21,45;UBERON:0003061,1.07e-21,45;UBERON:0006562,1.35e-20,24;UBERON:0003408,1.35e-20,24;UBERON:0001557,1.35e-20,24;UBERON:0001042,1.35e-20,24;UBERON:0008814,1.35e-20,24;UBERON:0009145,1.35e-20,24;UBERON:0000077,4.00e-19,35;UBERON:0000072,9.52e-18,27;UBERON:0007811,4.40e-12,36;UBERON:0003081,2.67e-11,87;UBERON:0000065,3.36e-11,41;UBERON:0001004,8.16e-11,42;UBERON:0000153,2.38e-09,43;UBERON:0000490,7.60e-09,66;UBERON:0000926,1.59e-08,120;UBERON:0004120,1.59e-08,120;UBERON:0006603,1.59e-08,120;UBERON:0003929,4.85e-08,55;UBERON:0002384,2.53e-07,46;UBERON:0001041,3.05e-07,80;UBERON:0002368,5.77e-07,60|phase1_expression=0,0,0,0,0,0,0,12.9123323441576,1.12630977721333,1.17032263160997,0.171217968225505,0.478632953972018,8.21763503669787,7.95525662012876,0,0.809901069559304,0.699561878128147,3.47008381894061,2.74228867211478,4.2438965179803,0.595303031057488,3.67376519443276,3.6567970479451,1.11994695955385,0.68822784320151,0,0,0,0,0.504060259519861,0.221730510655305,0,0,0,0,0,0,47.2940742732706,36.7227611926186,39.7878045420087,41.176204162171,51.2284113718834,51.9496077743334,0,0,0,0,0,0,0,0,0,1.17447824240415,6.5282592781021,9.41062637598899,0,0,0,0,0,0,0,0,0,0.988866362566974,0.7104801149461,0.599200221036809,0,0,0,0,0.285650984403804,0,0,0.0958454710182364,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0.075726193333184,0,0,0,0,0,0,0,0.842666520790511,0,0,0,0,0,0,0,0,0,0,0.79928715803342,3.88406825470758,0.445326417194474,0,0,0.230615497256059,0.150722640552623,0.23517741427141,0.125666591329675,0,0,2.65383165584962,0.485300549842228,1.32504911076236,1.93950101254089,0,0,0,0.510914110417183,1.31796636956512,4.79922184794726,1.27070227073065,0,0.915001205637253,0,0,0,0,0,0,1.49288364732112,0,0,0,0,0.180062129805349,0,0.136072998302656,0,0,0.258703370739016,0,0,0.175951124163949,0,0.278047249225598,0,0,0,0,0.257347907114715,0.284163499395593,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0.0810688095458557,0.438599962275997,0.219550115291051,0,0,0.102904612379284,0.330418782983798,0,0,0,0,0,0,0.380451252225118,0,0.329397909448022,0.251335208800269,0,0.19496408711912,0.898819408654221,0,0.199141273254367,0.189667900953082,0,0,0,0,0,0,0.295220295959204,0,0,0,0.166845105716094,0,0.224862112384854,0.202860121388503,0.241177159752417,0.50925170356284,1.43848068725405,1.13494658742525,0,0,0.372140947668503,0,0,0,0,1.10851914099963,0,0,0,0,0.335012514883631,0,0,0.315270288212382,0.44292937929755,0,0.491589944147214,0.345369963731791,0.144649058581512,1.50791283939272,2.71952841909355,0,0,0.160550589987792,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0.329940245945071,0,0,0,0,0.295301892880773,0,0,0,0,0.632073515871632,0,0,0,0,0,0,0,0,0,0.304464949114599,0.469343416127421,0,0.220528398054962,0,0,0.120625849856312,0.238744688006273,0,0,0.18542530201051,1.36696704638282,0.412773735926445,2.40752885580625,1.69531611304222,1.0935538217682,0.915112692826091,7.30907248973578,6.15786390224095,6.21899882119907,0,0.158167996790568,0,0,0,0,0,0.247960367176008,0,0,0.621339313086926,0,0,0,0,0,0,0.117357238645754,0,0,0,0,18.3286449964343,1.01362607645082,3.59488350076895,5.45667456506739,8.95133478337407,14.3050575442511,11.538763153917,12.4059202826645,15.5488332920147,13.641018391245,15.3255801407998,19.1992025057312,16.8370722870577,14.9602434792408,0,0,0,0,0,0.563047426353546,0.183151624267265,0,0,0,0,0,0.171853182343688,0,0,0,0,0,0,0,0,0,0,0,0.367687016900028,0,0.206035057238894,0,0,0.50695859978048,0,0.280924522409647,0,0.0574354689556133,0,0,0,0.412085900803307,0.147198920134397,0.342869252385415,0.177475806159338,0,0.290692833264657,0.0941093804153306,0.0846146078916765,0.365855945745545,0,0,0.561142271657738,0.118635018124174,0.29551344712669,0.409231043169689,0.154936841185966,0.192906610981141,0.249810577937946,0.233931608445408,0.214871054048298,0.191288332068843,0.441182838239031,0.695603506861264|short_description=p5@Lsp1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=16985 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|TSSclassifier=NA | |||
|UniProt=P19973 | |||
|association_with_transcript=-13bp_to_ENSMUST00000018963_5end | |||
|cluster_id=chr7:149646728..149646737,+ | |||
|description=CAGE_peak_5_at_Lsp1_5end | |||
|id=chr7:149646728..149646737,+ | |||
|ontology_enrichment_celltype=CL:0000988!4.60e-09!32;CL:0002032!4.60e-09!32;CL:0000037!4.60e-09!32;CL:0000566!4.60e-09!32;CL:0000837!4.60e-09!32;CL:0002031!2.82e-08!25;CL:0000838!4.58e-08!12;CL:0000738!8.79e-08!17;CL:0002087!8.79e-08!17;CL:0000084!1.53e-07!11;CL:0000827!1.53e-07!11;CL:0000542!4.40e-07!13;CL:0000051!4.40e-07!13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.01e-12,32;CL:0002032,2.01e-12,32;CL:0000037,2.01e-12,32;CL:0000837,2.01e-12,32;CL:0000838,2.44e-12,12;CL:0000738,1.02e-11,17;CL:0002087,1.02e-11,17;CL:0002031,1.25e-11,25;CL:0000084,3.14e-11,11;CL:0000827,3.14e-11,11;CL:0000542,3.19e-11,13;CL:0000051,3.19e-11,13;CL:0000791,1.30e-08,9;CL:0000789,1.30e-08,9;CL:0002420,1.30e-08,9;CL:0002419,1.30e-08,9;CL:0000790,1.30e-08,9;CL:0002320,2.53e-07,46;CL:0000134,2.53e-07,46;CL:0000624,3.51e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,4.98e-07,3;DOID:4045,4.98e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0002193!8.33e-19!48;UBERON:0002390!4.10e-17!45;UBERON:0003061!4.10e-17!45;UBERON:0004177!1.93e-14!29;UBERON:0002405!4.98e-13!70;UBERON:0003408!9.04e-12!24;UBERON:0002370!2.34e-11!23;UBERON:0000974!2.34e-11!23;UBERON:0004807!2.34e-11!23;UBERON:0005058!2.34e-11!23;UBERON:0003351!2.34e-11!23;UBERON:0009113!2.34e-11!23;UBERON:0003295!2.34e-11!23;UBERON:0009722!2.34e-11!23;UBERON:0005562!2.34e-11!23;UBERON:0007690!2.34e-11!23;UBERON:0006562!1.65e-10!24;UBERON:0001557!1.65e-10!24;UBERON:0001042!1.65e-10!24;UBERON:0008814!1.65e-10!24;UBERON:0009145!1.65e-10!24;UBERON:0000072!2.17e-08!27;UBERON:0003081!2.27e-08!88;UBERON:0005057!2.51e-08!51;UBERON:0001004!3.10e-07!42;UBERON:0000065!6.94e-07!41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.38e-24,29;UBERON:0005057,2.38e-24,29;UBERON:0002193,2.49e-23,48;UBERON:0002405,2.49e-23,48;UBERON:0002370,1.03e-21,23;UBERON:0000974,1.03e-21,23;UBERON:0004807,1.03e-21,23;UBERON:0005058,1.03e-21,23;UBERON:0003351,1.03e-21,23;UBERON:0009113,1.03e-21,23;UBERON:0003295,1.03e-21,23;UBERON:0009722,1.03e-21,23;UBERON:0005562,1.03e-21,23;UBERON:0007690,1.03e-21,23;UBERON:0002390,1.07e-21,45;UBERON:0003061,1.07e-21,45;UBERON:0006562,1.35e-20,24;UBERON:0003408,1.35e-20,24;UBERON:0001557,1.35e-20,24;UBERON:0001042,1.35e-20,24;UBERON:0008814,1.35e-20,24;UBERON:0009145,1.35e-20,24;UBERON:0000077,4.00e-19,35;UBERON:0000072,9.52e-18,27;UBERON:0007811,4.40e-12,36;UBERON:0003081,2.67e-11,87;UBERON:0000065,3.36e-11,41;UBERON:0001004,8.16e-11,42;UBERON:0000153,2.38e-09,43;UBERON:0000490,7.60e-09,66;UBERON:0000926,1.59e-08,120;UBERON:0004120,1.59e-08,120;UBERON:0006603,1.59e-08,120;UBERON:0003929,4.85e-08,55;UBERON:0002384,2.53e-07,46;UBERON:0001041,3.05e-07,80;UBERON:0002368,5.77e-07,60 | |||
|phase1_expression=0,0,0,0,0,0,0,12.9123323441576,1.12630977721333,1.17032263160997,0.171217968225505,0.478632953972018,8.21763503669787,7.95525662012876,0,0.809901069559304,0.699561878128147,3.47008381894061,2.74228867211478,4.2438965179803,0.595303031057488,3.67376519443276,3.6567970479451,1.11994695955385,0.68822784320151,0,0,0,0,0.504060259519861,0.221730510655305,0,0,0,0,0,0,47.2940742732706,36.7227611926186,39.7878045420087,41.176204162171,51.2284113718834,51.9496077743334,0,0,0,0,0,0,0,0,0,1.17447824240415,6.5282592781021,9.41062637598899,0,0,0,0,0,0,0,0,0,0.988866362566974,0.7104801149461,0.599200221036809,0,0,0,0,0.285650984403804,0,0,0.0958454710182364,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0.075726193333184,0,0,0,0,0,0,0,0.842666520790511,0,0,0,0,0,0,0,0,0,0,0.79928715803342,3.88406825470758,0.445326417194474,0,0,0.230615497256059,0.150722640552623,0.23517741427141,0.125666591329675,0,0,2.65383165584962,0.485300549842228,1.32504911076236,1.93950101254089,0,0,0,0.510914110417183,1.31796636956512,4.79922184794726,1.27070227073065,0,0.915001205637253,0,0,0,0,0,0,1.49288364732112,0,0,0,0,0.180062129805349,0,0.136072998302656,0,0,0.258703370739016,0,0,0.175951124163949,0,0.278047249225598,0,0,0,0,0.257347907114715,0.284163499395593,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0.0810688095458557,0.438599962275997,0.219550115291051,0,0,0.102904612379284,0.330418782983798,0,0,0,0,0,0,0.380451252225118,0,0.329397909448022,0.251335208800269,0,0.19496408711912,0.898819408654221,0,0.199141273254367,0.189667900953082,0,0,0,0,0,0,0.295220295959204,0,0,0,0.166845105716094,0,0.224862112384854,0.202860121388503,0.241177159752417,0.50925170356284,1.43848068725405,1.13494658742525,0,0,0.372140947668503,0,0,0,0,1.10851914099963,0,0,0,0,0.335012514883631,0,0,0.315270288212382,0.44292937929755,0,0.491589944147214,0.345369963731791,0.144649058581512,1.50791283939272,2.71952841909355,0,0,0.160550589987792,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0.329940245945071,0,0,0,0,0.295301892880773,0,0,0,0,0.632073515871632,0,0,0,0,0,0,0,0,0,0.304464949114599,0.469343416127421,0,0.220528398054962,0,0,0.120625849856312,0.238744688006273,0,0,0.18542530201051,1.36696704638282,0.412773735926445,2.40752885580625,1.69531611304222,1.0935538217682,0.915112692826091,7.30907248973578,6.15786390224095,6.21899882119907,0,0.158167996790568,0,0,0,0,0,0.247960367176008,0,0,0.621339313086926,0,0,0,0,0,0,0.117357238645754,0,0,0,0,18.3286449964343,1.01362607645082,3.59488350076895,5.45667456506739,8.95133478337407,14.3050575442511,11.538763153917,12.4059202826645,15.5488332920147,13.641018391245,15.3255801407998,19.1992025057312,16.8370722870577,14.9602434792408,0,0,0,0,0,0.563047426353546,0.183151624267265,0,0,0,0,0,0.171853182343688,0,0,0,0,0,0,0,0,0,0,0,0.367687016900028,0,0.206035057238894,0,0,0.50695859978048,0,0.280924522409647,0,0.0574354689556133,0,0,0,0.412085900803307,0.147198920134397,0.342869252385415,0.177475806159338,0,0.290692833264657,0.0941093804153306,0.0846146078916765,0.365855945745545,0,0,0.561142271657738,0.118635018124174,0.29551344712669,0.409231043169689,0.154936841185966,0.192906610981141,0.249810577937946,0.233931608445408,0.214871054048298,0.191288332068843,0.441182838239031,0.695603506861264 | |||
|short_description=p5@Lsp1 | |||
}} |
Latest revision as of 05:13, 26 September 2015
Short description: | p5@Lsp1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Lsp1_5end |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | -13bp_to_ENSMUST00000018963_5end |
EntrezGene: | Lsp1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.01e-12 | 32 |
hematopoietic oligopotent progenitor cell | 2.01e-12 | 32 |
hematopoietic stem cell | 2.01e-12 | 32 |
hematopoietic multipotent progenitor cell | 2.01e-12 | 32 |
lymphoid lineage restricted progenitor cell | 2.44e-12 | 12 |
leukocyte | 1.02e-11 | 17 |
nongranular leukocyte | 1.02e-11 | 17 |
hematopoietic lineage restricted progenitor cell | 1.25e-11 | 25 |
T cell | 3.14e-11 | 11 |
pro-T cell | 3.14e-11 | 11 |
lymphocyte | 3.19e-11 | 13 |
common lymphoid progenitor | 3.19e-11 | 13 |
mature alpha-beta T cell | 1.30e-08 | 9 |
alpha-beta T cell | 1.30e-08 | 9 |
immature T cell | 1.30e-08 | 9 |
mature T cell | 1.30e-08 | 9 |
immature alpha-beta T cell | 1.30e-08 | 9 |
connective tissue cell | 2.53e-07 | 46 |
mesenchymal cell | 2.53e-07 | 46 |
CD4-positive, alpha-beta T cell | 3.51e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 4.98e-07 | 3 |
muscle cancer | 4.98e-07 | 3 |