FF:822-18A4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00004879 | ||
|accession_numbers=CAGE;DRX009041;DRR009915;DRZ001340;DRZ002723 | |accession_numbers=CAGE;DRX009041;DRR009915;DRZ001340;DRZ002723;DRZ012690;DRZ014073 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000479,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000117,UBERON:0000171,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000479,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000117,UBERON:0000171,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr5:77543897..77543911,-!p2@Hopx!2.26!333.63!Hopx;;chr10:22539932..22539956,-!p1@Tcf21!1.91!206.63!Tcf21;;chr8:123608252..123608268,+!p1@Foxf1a!1.86!103.40!Foxf1a;;chr11:85699862..85699920,+!p1@Tbx4!1.85!69.15!Tbx4;;chr12:57636034..57636087,-!p1@Nkx2-1!1.75!55.22!Nkx2-1;;chr17:87153240..87153254,+!p1@Epas1!1.56!647.75!Epas1;;chr17:87153462..87153473,+!p3@Epas1!1.49!108.48!Epas1;;chr12:57636178..57636194,-!p2@Nkx2-1!1.47!28.18!Nkx2-1;;chr5:77543935..77543947,-!p4@Hopx!1.46!27.86!Hopx;;chr13:72101161..72101177,-!p2@Irx1!1.43!35.23!Irx1;;chr11:85646303..85646329,+!p1@Tbx2!1.30!121.75!Tbx2;;chr5:98609885..98609900,+!p1@Prdm8!1.30!19.01!Prdm8;;chr17:87153028..87153049,+!p2@Epas1!1.29!369.18!Epas1;;chr2:103264213..103264233,+!p1@Elf5!1.29!18.68!Elf5;;chr11:98636531..98636559,-!p1@Nr1d1!1.26!96.19!Nr1d1;;chr2:103143336..103143367,-!p1@Ehf!1.25!26.71!Ehf;;chr13:31717548..31717596,+!p1@Foxf2!1.24!32.44!Foxf2;;chr14:64562503..64562524,+!p1@Sox7!1.23!92.91!Sox7;;chr5:77544170..77544181,-!p6@Hopx!1.21!15.40!Hopx;;chr11:116196664..116196679,-!p1@Foxj1!1.20!22.94!Foxj1;;chr17:87153519..87153533,+!p5@Epas1!1.17!20.48!Epas1;;chr7:51787434..51787448,-!p1@Spib!1.17!19.66!Spib;;chr7:52960555..52960662,+!p1@Dbp!1.16!112.41!Dbp;;chr15:81633165..81633188,+!p2@Tef!1.16!109.46!Tef;;chr6:99216488..99216534,-!p2@Foxp1!1.16!38.18!Foxp1;;chr17:87153440..87153451,+!p4@Epas1!1.16!27.53!Epas1;;chr1:4486481..4486501,-!p2@Sox17!1.16!20.16!Sox17;;chr2:147871627..147871641,-!p1@Foxa2!1.16!13.60!Foxa2;;chr6:88148650..88148669,+!p1@Gata2!1.15!108.31!Gata2;;chr6:52154386..52154407,-!p2@Hoxa5!1.15!16.88!Hoxa5;;chr2:180069370..180069409,-!p1@Gata5!1.15!15.40!Gata5;;chr3:8666963..8666978,-!p1@Hey1!1.13!80.95!Hey1;;chr4:44723559..44723593,-!p1@Pax5!1.13!12.45!Pax5;;chr13:72766279..72766296,+!p2@Irx2!1.12!18.19!Irx2;;chr9:96159147..96159204,+!p2@Tfdp2!1.11!22.45!Tfdp2;;chr13:72766250..72766273,+!p1@Irx2!1.11!18.52!Irx2;;chr13:72101178..72101203,-!p1@Irx1!1.09!17.70!Irx1;;chr12:58646974..58647003,-!p1@Foxa1!1.09!15.24!Foxa1;;chr1:38721792..38721845,-!p1@Aff3!1.09!14.09!Aff3;;chr16:95680889..95680991,-!p1@Erg!1.06!85.86!Erg;;chr12:37835141..37835194,+!p1@Meox2!1.06!32.77!Meox2;;chr9:48644037..48644067,-!p2@Zbtb16!1.06!26.71!Zbtb16;;chr11:85646341..85646352,+!p3@Tbx2!1.06!20.97!Tbx2;;chr3:30408674..30408716,-!p2@Mecom!1.06!17.21!Mecom;;chr4:135129538..135129558,-!p1@Grhl3!1.06!15.89!Grhl3;;chr3:30408603..30408668,-!p1@Mecom!1.05!23.76!Mecom;;chr11:85646469..85646488,+!p5@Tbx2!1.05!15.57!Tbx2;;chr11:85646263..85646278,+!p2@Tbx2!1.04!25.73!Tbx2;;chr15:81633203..81633215,+!p3@Tef!1.04!15.73!Tef;;chr9:63869890..63869908,-!p6@Smad6!1.04!13.11!Smad6;;chr4:44723520..44723544,-!p2@Pax5!1.03!9.83!Pax5;;chr12:57636240..57636256,-!p4@Nkx2-1!1.03!9.83!Nkx2-1;;chr4:148275237..148275311,+!p2@Casz1!1.02!39.65!Casz1;;chr8:94325814..94325839,-!p2@Irx3!1.02!19.99!Irx3;;chr13:99954640..99954681,+!p1@Zfp366!1.01!33.92!Zfp366;;chr1:4483679..4483695,-!p1@Sox17!1.00!42.93!Sox17;;chrX:137077716..137077734,-!p1@Tsc22d3!0.99!65.22!Tsc22d3;;chr7:52960700..52960719,+!p2@Dbp!0.99!10.81!Dbp;;chr11:16908650..16908690,-!p1@Plek!0.98!54.07!Plek;;chr17:87153505..87153516,+!p6@Epas1!0.97!11.80!Epas1;;chr11:98636508..98636524,-!p3@Nr1d1!0.97!10.32!Nr1d1;;chr18:52775562..52775650,+!p1@Zfp474!0.97!8.36!Zfp474;;chr12:57636220..57636236,-!p3@Nkx2-1!0.97!8.36!Nkx2-1;;chr6:128250380..128250442,-!p2@Tead4!0.96!10.49!Tead4;;chr9:51021788..51021802,+!p1@Pou2af1!0.96!9.83!Pou2af1;;chr11:85646427..85646451,+!p4@Tbx2!0.95!14.09!Tbx2;;chr6:52154414..52154462,-!p1@Hoxa5!0.95!10.98!Hoxa5;;chr5:120120667..120120685,+!p3@Tbx3!0.94!15.08!Tbx3;;chr14:19071466..19071550,-!p1@Nr1d2!0.93!53.09!Nr1d2;;chr8:74842952..74842970,+!p1@Klf2!0.92!512.24!Klf2;;chr1:4486505..4486527,-!p5@Sox17!0.92!10.00!Sox17;;chr11:52096066..52096081,-!p2@Tcf7!0.92!9.01!Tcf7;;chr2:181406327..181406350,-!p1@Sox18!0.91!231.38!Sox18;;chr4:119486912..119486954,+!p3@Hivep3!0.90!12.45!Hivep3;;chr13:72101141..72101158,-!p3@Irx1!0.90!8.68!Irx1;;chr2:103264245..103264268,+!p2@Elf5!0.90!6.88!Elf5;;chr9:63869918..63869936,-!p9@Smad6!0.90!6.88!Smad6;;chr5:120121446..120121461,+!p2@Tbx3!0.89!23.10!Tbx3;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.89!20.16!Tfcp2l1;;chr8:94325321..94325366,-!p1@Irx3!0.89!17.04!Irx3;;chr11:98636400..98636418,-!p4@Nr1d1!0.89!9.01!Nr1d1;;chr9:63869751..63869767,-!p1@Smad6!0.87!17.70!Smad6;;chr9:63869802..63869815,-!p3@Smad6!0.86!12.78!Smad6;;chr16:42907676..42907797,+!p1@Zbtb20!0.85!83.24!Zbtb20;;chr4:148178559..148178603,+!p1@Casz1!0.85!18.19!Casz1;;chr1:87546583..87546595,+!p1@Sp100!0.85!8.85!Sp100;;chr12:37835120..37835133,+!p2@Meox2!0.85!8.85!Meox2;;chr1:4486530..4486557,-!p4@Sox17!0.85!8.03!Sox17;;chr12:36219645..36219730,-!p1@Ahr!0.84!62.27!Ahr;;chr19:26679654..26679675,+!p1@Smarca2!0.84!59.81!Smarca2;;chr12:37835248..37835260,+!p4@Meox2!0.84!5.90!Meox2;;chr8:94881733..94881790,+!p1@Irx5!0.83!11.63!Irx5;;chr1:4486453..4486470,-!p3@Sox17!0.83!7.70!Sox17;;chr2:91034924..91034946,-!p2@Nr1h3!0.83!7.21!Nr1h3;;chr4:44723633..44723646,-!p3@Pax5!0.83!5.74!Pax5;;chr13:31717597..31717613,+!p2@Foxf2!0.83!5.74!Foxf2;;chr13:30841099..30841116,+!p1@Irf4!0.82!9.01!Irf4;;chr11:98407234..98407259,-!p2@Ikzf3!0.82!5.57!Ikzf3;;chr18:55147667..55147746,-!p2@Zfp608!0.81!27.20!Zfp608;;chr5:77524231..77524245,-!p3@Hopx!0.81!14.42!Hopx;;chr3:8666997..8667012,-!p2@Hey1!0.81!13.27!Hey1;;chr4:55545337..55545357,-!p1@Klf4!0.80!86.03!Klf4;;chr11:98407264..98407295,-!p1@Ikzf3!0.80!5.24!Ikzf3;;chr9:32503590..32503680,+!p1@Ets1!0.79!203.35!Ets1;;chr11:53583544..53583559,+!p1@Irf1!0.79!93.40!Irf1;;chr8:107793688..107793736,+!p1@Hsf4!0.79!6.88!Hsf4;;chr18:53623836..53623839,+!p1@Prdm6!0.79!6.06!Prdm6;;chr14:22807107..22807119,-!p2@Zfp503!0.78!23.76!Zfp503;;chr1:186556323..186556370,-!p2@Hlx!0.78!14.58!Hlx;;chr2:120365588..120365602,-!p2@Zfp106!0.78!8.85!Zfp106;;chr8:94325486..94325510,-!p4@Irx3!0.78!6.72!Irx3;;chr12:37835203..37835218,+!p3@Meox2!0.78!6.06!Meox2;;chr12:57637732..57637777,-!p5@Nkx2-1!0.78!5.08!Nkx2-1;;chr11:90252223..90252240,-!p1@Hlf!0.77!44.24!Hlf;;chr1:137155026..137155042,-!p1@Elf3!0.77!31.30!Elf3;;chr11:69579472..69579529,+!p1@Zbtb4!0.77!26.87!Zbtb4;;chr5:77524250..77524300,-!p1@Hopx!0.76!107.17!Hopx;;chr4:122911086..122911112,+!p1@Heyl!0.76!61.12!Heyl;;chr16:43363968..43364001,+!p7@Zbtb20!0.76!9.18!Zbtb20;;chr11:83664365..83664383,+!p1@Hnf1b!0.76!4.75!Hnf1b;;chr2:103143315..103143328,-!p2@Ehf!0.76!4.75!Ehf;;chr19:26681672..26681716,+!p5@Smarca2!0.75!21.30!Smarca2;;chr16:43619101..43619151,+!p6@Zbtb20!0.75!12.13!Zbtb20;;chr3:130815703..130815721,+!p2@Lef1!0.75!5.74!Lef1;;chr9:48644013..48644027,-!p5@Zbtb16!0.75!5.74!Zbtb16;;chr5:120285144..120285160,+!p1@Tbx5!0.75!4.59!Tbx5;;chr11:85699562..85699575,+!p6@Tbx4!0.75!4.59!Tbx4;;chr10:92773591..92773623,-!p1@Elk3!0.74!110.94!Elk3;;chr6:128250471..128250519,-!p1@Tead4!0.74!9.67!Tead4;;chr8:47825166..47825178,+!p2@Irf2!0.73!7.05!Irf2;;chr10:67599319..67599360,-!p2@Arid5b!0.72!52.93!Arid5b;;chr18:11052642..11052659,+!p1@Gata6!0.72!24.09!Gata6;;chr9:48644306..48644364,-!p1@Zbtb16!0.72!18.84!Zbtb16;;chr1:186556410..186556424,-!p1@Hlx!0.72!14.58!Hlx;;chr9:63869850..63869873,-!p2@Smad6!0.72!13.76!Smad6;;chr5:120285161..120285176,+!p2@Tbx5!0.72!4.26!Tbx5;;chr1:64167972..64168026,-!p1@Klf7!0.71!110.12!Klf7;;chr16:22439681..22439698,-!p1@Etv5!0.71!81.44!Etv5;;chr1:64167550..64167618,-!p4@Klf7!0.71!12.29!Klf7;;chr7:74517982..74518012,-!p2@Mef2a!0.71!8.19!Mef2a;;chr9:96653241..96653288,-!p1@E030011O05Rik,p5@Zbtb38!0.71!8.19!Zbtb38;;chr5:77544108..77544119,-!p7@Hopx!0.71!4.10!Hopx;;chr19:23215673..23215753,+!p1@Klf9!0.70!65.71!Klf9;;chr1:135320989..135321043,-!p1@Sox13!0.70!50.63!Sox13;;chr7:119822957..119822980,+!p2@Tead1!0.70!22.12!Tead1;;chr16:43363190..43363242,+!p2@Zbtb20!0.70!13.76!Zbtb20;;chr10:92773708..92773734,-!p3@Elk3!0.70!8.52!Elk3;;chr3:135271185..135271254,-!p4@Nfkb1!0.70!7.87!Nfkb1;;chr11:121380640..121380655,-!p1@Zfp750!0.70!7.05!Zfp750;;chr15:102076870..102076941,-!p1@Rarg!0.69!48.18!Rarg;;chr2:77357622..77357704,-!p1@Zfp385b!0.69!11.63!Zfp385b;;chr10:67599361..67599372,-!p5@Arid5b!0.69!6.39!Arid5b;;chr16:25801993..25802014,+!p1@Trp63!0.69!3.93!Trp63;;chr5:120121020..120121049,+!p1@Tbx3!0.68!26.22!Tbx3;;chr10:67000609..67000625,+!p1@Egr2!0.68!9.50!Egr2;;chr15:102087880..102087927,-!p2@Rarg!0.68!9.50!Rarg;;chr15:81633224..81633235,+!p5@Tef!0.68!4.92!Tef;;chr12:57796615..57796687,+!p1@Pax9!0.68!3.77!Pax9;;chr12:57637595..57637608,-!p7@Nkx2-1!0.68!3.77!Nkx2-1;;chr11:85703483..85703508,+!p2@Tbx4!0.68!3.77!Tbx4;;chr2:147871948..147871977,-!p3@Foxa2!0.68!3.77!Foxa2;;chr4:63064364..63064384,-!p1@Akna!0.67!12.13!Akna;;chr4:148178529..148178548,+!p3@Casz1!0.67!9.67!Casz1;;chr2:91035197..91035237,-!p1@Nr1h3!0.67!8.36!Nr1h3;;chr13:55932591..55932622,-!p1@Pitx1!0.67!4.59!Pitx1;;chr6:98978245..98978289,-!p1@Foxp1!0.66!61.94!Foxp1;;chr4:94718861..94718872,-!p2@Jun!0.66!31.13!Jun;;chr6:144730427..144730508,-!p1@Sox5!0.66!25.56!Sox5;;chr19:26681929..26681987,+!p4@Smarca2!0.66!23.10!Smarca2;;chr14:65568469..65568511,-!p2@Hmbox1!0.66!13.27!Hmbox1;;chr16:43619057..43619078,+!p8@Zbtb20!0.66!8.03!Zbtb20;;chr9:63869834..63869849,-!p5@Smad6!0.66!6.55!Smad6;;chr6:88143711..88143717,+!p2@Gata2!0.66!6.06!Gata2;;chr9:24578720..24578735,-!p1@Tbx20!0.66!3.60!Tbx20;;chr17:14011485..14011507,+!p2@Mllt4!0.66!3.60!Mllt4;;chr5:104121391..104121450,+!p3@Aff1!0.65!20.65!Aff1;;chrX:137077653..137077669,-!p3@Tsc22d3!0.65!17.86!Tsc22d3;;chr2:160698288..160698358,-!p3@Zhx3!0.65!11.96!Zhx3;;chr9:96653072..96653154,-!p1@Zbtb38!0.65!10.32!Zbtb38;;chr6:52114821..52114828,-!p1@Hoxa2!0.65!5.57!Hoxa2;;chr19:5560600..5560617,-!p1@Ovol1!0.65!4.42!Ovol1;;chr8:123260252..123260264,+!p1@Irf8!0.64!27.69!Irf8;;chr14:98568761..98568814,-!p2@Dach1!0.64!26.55!Dach1;;chr2:173044380..173044432,-!p1@Zbp1!0.64!9.01!Zbp1;;chr13:99954688..99954710,+!p2@Zfp366!0.64!7.21!Zfp366;;chr3:34548909..34548927,+!p1@Sox2!0.64!6.23!Sox2;;chr4:94718879..94718898,-!p1@Jun!0.63!280.04!Jun;;chr16:15887371..15887385,+!p1@Cebpd!0.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| |expression_enrichment_score=chr5:77543897..77543911,-!p2@Hopx!2.26!333.63!Hopx;;chr10:22539932..22539956,-!p1@Tcf21!1.91!206.63!Tcf21;;chr8:123608252..123608268,+!p1@Foxf1a!1.86!103.40!Foxf1a;;chr11:85699862..85699920,+!p1@Tbx4!1.85!69.15!Tbx4;;chr12:57636034..57636087,-!p1@Nkx2-1!1.75!55.22!Nkx2-1;;chr17:87153240..87153254,+!p1@Epas1!1.56!647.75!Epas1;;chr17:87153462..87153473,+!p3@Epas1!1.49!108.48!Epas1;;chr12:57636178..57636194,-!p2@Nkx2-1!1.47!28.18!Nkx2-1;;chr5:77543935..77543947,-!p4@Hopx!1.46!27.86!Hopx;;chr13:72101161..72101177,-!p2@Irx1!1.43!35.23!Irx1;;chr11:85646303..85646329,+!p1@Tbx2!1.30!121.75!Tbx2;;chr5:98609885..98609900,+!p1@Prdm8!1.30!19.01!Prdm8;;chr17:87153028..87153049,+!p2@Epas1!1.29!369.18!Epas1;;chr2:103264213..103264233,+!p1@Elf5!1.29!18.68!Elf5;;chr11:98636531..98636559,-!p1@Nr1d1!1.26!96.19!Nr1d1;;chr2:103143336..103143367,-!p1@Ehf!1.25!26.71!Ehf;;chr13:31717548..31717596,+!p1@Foxf2!1.24!32.44!Foxf2;;chr14:64562503..64562524,+!p1@Sox7!1.23!92.91!Sox7;;chr5:77544170..77544181,-!p6@Hopx!1.21!15.40!Hopx;;chr11:116196664..116196679,-!p1@Foxj1!1.20!22.94!Foxj1;;chr17:87153519..87153533,+!p5@Epas1!1.17!20.48!Epas1;;chr7:51787434..51787448,-!p1@Spib!1.17!19.66!Spib;;chr7:52960555..52960662,+!p1@Dbp!1.16!112.41!Dbp;;chr15:81633165..81633188,+!p2@Tef!1.16!109.46!Tef;;chr6:99216488..99216534,-!p2@Foxp1!1.16!38.18!Foxp1;;chr17:87153440..87153451,+!p4@Epas1!1.16!27.53!Epas1;;chr1:4486481..4486501,-!p2@Sox17!1.16!20.16!Sox17;;chr2:147871627..147871641,-!p1@Foxa2!1.16!13.60!Foxa2;;chr6:88148650..88148669,+!p1@Gata2!1.15!108.31!Gata2;;chr6:52154386..52154407,-!p2@Hoxa5!1.15!16.88!Hoxa5;;chr2:180069370..180069409,-!p1@Gata5!1.15!15.40!Gata5;;chr3:8666963..8666978,-!p1@Hey1!1.13!80.95!Hey1;;chr4:44723559..44723593,-!p1@Pax5!1.13!12.45!Pax5;;chr13:72766279..72766296,+!p2@Irx2!1.12!18.19!Irx2;;chr9:96159147..96159204,+!p2@Tfdp2!1.11!22.45!Tfdp2;;chr13:72766250..72766273,+!p1@Irx2!1.11!18.52!Irx2;;chr13:72101178..72101203,-!p1@Irx1!1.09!17.70!Irx1;;chr12:58646974..58647003,-!p1@Foxa1!1.09!15.24!Foxa1;;chr1:38721792..38721845,-!p1@Aff3!1.09!14.09!Aff3;;chr16:95680889..95680991,-!p1@Erg!1.06!85.86!Erg;;chr12:37835141..37835194,+!p1@Meox2!1.06!32.77!Meox2;;chr9:48644037..48644067,-!p2@Zbtb16!1.06!26.71!Zbtb16;;chr11:85646341..85646352,+!p3@Tbx2!1.06!20.97!Tbx2;;chr3:30408674..30408716,-!p2@Mecom!1.06!17.21!Mecom;;chr4:135129538..135129558,-!p1@Grhl3!1.06!15.89!Grhl3;;chr3:30408603..30408668,-!p1@Mecom!1.05!23.76!Mecom;;chr11:85646469..85646488,+!p5@Tbx2!1.05!15.57!Tbx2;;chr11:85646263..85646278,+!p2@Tbx2!1.04!25.73!Tbx2;;chr15:81633203..81633215,+!p3@Tef!1.04!15.73!Tef;;chr9:63869890..63869908,-!p6@Smad6!1.04!13.11!Smad6;;chr4:44723520..44723544,-!p2@Pax5!1.03!9.83!Pax5;;chr12:57636240..57636256,-!p4@Nkx2-1!1.03!9.83!Nkx2-1;;chr4:148275237..148275311,+!p2@Casz1!1.02!39.65!Casz1;;chr8:94325814..94325839,-!p2@Irx3!1.02!19.99!Irx3;;chr13:99954640..99954681,+!p1@Zfp366!1.01!33.92!Zfp366;;chr1:4483679..4483695,-!p1@Sox17!1.00!42.93!Sox17;;chrX:137077716..137077734,-!p1@Tsc22d3!0.99!65.22!Tsc22d3;;chr7:52960700..52960719,+!p2@Dbp!0.99!10.81!Dbp;;chr11:16908650..16908690,-!p1@Plek!0.98!54.07!Plek;;chr17:87153505..87153516,+!p6@Epas1!0.97!11.80!Epas1;;chr11:98636508..98636524,-!p3@Nr1d1!0.97!10.32!Nr1d1;;chr18:52775562..52775650,+!p1@Zfp474!0.97!8.36!Zfp474;;chr12:57636220..57636236,-!p3@Nkx2-1!0.97!8.36!Nkx2-1;;chr6:128250380..128250442,-!p2@Tead4!0.96!10.49!Tead4;;chr9:51021788..51021802,+!p1@Pou2af1!0.96!9.83!Pou2af1;;chr11:85646427..85646451,+!p4@Tbx2!0.95!14.09!Tbx2;;chr6:52154414..52154462,-!p1@Hoxa5!0.95!10.98!Hoxa5;;chr5:120120667..120120685,+!p3@Tbx3!0.94!15.08!Tbx3;;chr14:19071466..19071550,-!p1@Nr1d2!0.93!53.09!Nr1d2;;chr8:74842952..74842970,+!p1@Klf2!0.92!512.24!Klf2;;chr1:4486505..4486527,-!p5@Sox17!0.92!10.00!Sox17;;chr11:52096066..52096081,-!p2@Tcf7!0.92!9.01!Tcf7;;chr2:181406327..181406350,-!p1@Sox18!0.91!231.38!Sox18;;chr4:119486912..119486954,+!p3@Hivep3!0.90!12.45!Hivep3;;chr13:72101141..72101158,-!p3@Irx1!0.90!8.68!Irx1;;chr2:103264245..103264268,+!p2@Elf5!0.90!6.88!Elf5;;chr9:63869918..63869936,-!p9@Smad6!0.90!6.88!Smad6;;chr5:120121446..120121461,+!p2@Tbx3!0.89!23.10!Tbx3;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.89!20.16!Tfcp2l1;;chr8:94325321..94325366,-!p1@Irx3!0.89!17.04!Irx3;;chr11:98636400..98636418,-!p4@Nr1d1!0.89!9.01!Nr1d1;;chr9:63869751..63869767,-!p1@Smad6!0.87!17.70!Smad6;;chr9:63869802..63869815,-!p3@Smad6!0.86!12.78!Smad6;;chr16:42907676..42907797,+!p1@Zbtb20!0.85!83.24!Zbtb20;;chr4:148178559..148178603,+!p1@Casz1!0.85!18.19!Casz1;;chr1:87546583..87546595,+!p1@Sp100!0.85!8.85!Sp100;;chr12:37835120..37835133,+!p2@Meox2!0.85!8.85!Meox2;;chr1:4486530..4486557,-!p4@Sox17!0.85!8.03!Sox17;;chr12:36219645..36219730,-!p1@Ahr!0.84!62.27!Ahr;;chr19:26679654..26679675,+!p1@Smarca2!0.84!59.81!Smarca2;;chr12:37835248..37835260,+!p4@Meox2!0.84!5.90!Meox2;;chr8:94881733..94881790,+!p1@Irx5!0.83!11.63!Irx5;;chr1:4486453..4486470,-!p3@Sox17!0.83!7.70!Sox17;;chr2:91034924..91034946,-!p2@Nr1h3!0.83!7.21!Nr1h3;;chr4:44723633..44723646,-!p3@Pax5!0.83!5.74!Pax5;;chr13:31717597..31717613,+!p2@Foxf2!0.83!5.74!Foxf2;;chr13:30841099..30841116,+!p1@Irf4!0.82!9.01!Irf4;;chr11:98407234..98407259,-!p2@Ikzf3!0.82!5.57!Ikzf3;;chr18:55147667..55147746,-!p2@Zfp608!0.81!27.20!Zfp608;;chr5:77524231..77524245,-!p3@Hopx!0.81!14.42!Hopx;;chr3:8666997..8667012,-!p2@Hey1!0.81!13.27!Hey1;;chr4:55545337..55545357,-!p1@Klf4!0.80!86.03!Klf4;;chr11:98407264..98407295,-!p1@Ikzf3!0.80!5.24!Ikzf3;;chr9:32503590..32503680,+!p1@Ets1!0.79!203.35!Ets1;;chr11:53583544..53583559,+!p1@Irf1!0.79!93.40!Irf1;;chr8:107793688..107793736,+!p1@Hsf4!0.79!6.88!Hsf4;;chr18:53623836..53623839,+!p1@Prdm6!0.79!6.06!Prdm6;;chr14:22807107..22807119,-!p2@Zfp503!0.78!23.76!Zfp503;;chr1:186556323..186556370,-!p2@Hlx!0.78!14.58!Hlx;;chr2:120365588..120365602,-!p2@Zfp106!0.78!8.85!Zfp106;;chr8:94325486..94325510,-!p4@Irx3!0.78!6.72!Irx3;;chr12:37835203..37835218,+!p3@Meox2!0.78!6.06!Meox2;;chr12:57637732..57637777,-!p5@Nkx2-1!0.78!5.08!Nkx2-1;;chr11:90252223..90252240,-!p1@Hlf!0.77!44.24!Hlf;;chr1:137155026..137155042,-!p1@Elf3!0.77!31.30!Elf3;;chr11:69579472..69579529,+!p1@Zbtb4!0.77!26.87!Zbtb4;;chr5:77524250..77524300,-!p1@Hopx!0.76!107.17!Hopx;;chr4:122911086..122911112,+!p1@Heyl!0.76!61.12!Heyl;;chr16:43363968..43364001,+!p7@Zbtb20!0.76!9.18!Zbtb20;;chr11:83664365..83664383,+!p1@Hnf1b!0.76!4.75!Hnf1b;;chr2:103143315..103143328,-!p2@Ehf!0.76!4.75!Ehf;;chr19:26681672..26681716,+!p5@Smarca2!0.75!21.30!Smarca2;;chr16:43619101..43619151,+!p6@Zbtb20!0.75!12.13!Zbtb20;;chr3:130815703..130815721,+!p2@Lef1!0.75!5.74!Lef1;;chr9:48644013..48644027,-!p5@Zbtb16!0.75!5.74!Zbtb16;;chr5:120285144..120285160,+!p1@Tbx5!0.75!4.59!Tbx5;;chr11:85699562..85699575,+!p6@Tbx4!0.75!4.59!Tbx4;;chr10:92773591..92773623,-!p1@Elk3!0.74!110.94!Elk3;;chr6:128250471..128250519,-!p1@Tead4!0.74!9.67!Tead4;;chr8:47825166..47825178,+!p2@Irf2!0.73!7.05!Irf2;;chr10:67599319..67599360,-!p2@Arid5b!0.72!52.93!Arid5b;;chr18:11052642..11052659,+!p1@Gata6!0.72!24.09!Gata6;;chr9:48644306..48644364,-!p1@Zbtb16!0.72!18.84!Zbtb16;;chr1:186556410..186556424,-!p1@Hlx!0.72!14.58!Hlx;;chr9:63869850..63869873,-!p2@Smad6!0.72!13.76!Smad6;;chr5:120285161..120285176,+!p2@Tbx5!0.72!4.26!Tbx5;;chr1:64167972..64168026,-!p1@Klf7!0.71!110.12!Klf7;;chr16:22439681..22439698,-!p1@Etv5!0.71!81.44!Etv5;;chr1:64167550..64167618,-!p4@Klf7!0.71!12.29!Klf7;;chr7:74517982..74518012,-!p2@Mef2a!0.71!8.19!Mef2a;;chr9:96653241..96653288,-!p1@E030011O05Rik,p5@Zbtb38!0.71!8.19!Zbtb38;;chr5:77544108..77544119,-!p7@Hopx!0.71!4.10!Hopx;;chr19:23215673..23215753,+!p1@Klf9!0.70!65.71!Klf9;;chr1:135320989..135321043,-!p1@Sox13!0.70!50.63!Sox13;;chr7:119822957..119822980,+!p2@Tead1!0.70!22.12!Tead1;;chr16:43363190..43363242,+!p2@Zbtb20!0.70!13.76!Zbtb20;;chr10:92773708..92773734,-!p3@Elk3!0.70!8.52!Elk3;;chr3:135271185..135271254,-!p4@Nfkb1!0.70!7.87!Nfkb1;;chr11:121380640..121380655,-!p1@Zfp750!0.70!7.05!Zfp750;;chr15:102076870..102076941,-!p1@Rarg!0.69!48.18!Rarg;;chr2:77357622..77357704,-!p1@Zfp385b!0.69!11.63!Zfp385b;;chr10:67599361..67599372,-!p5@Arid5b!0.69!6.39!Arid5b;;chr16:25801993..25802014,+!p1@Trp63!0.69!3.93!Trp63;;chr5:120121020..120121049,+!p1@Tbx3!0.68!26.22!Tbx3;;chr10:67000609..67000625,+!p1@Egr2!0.68!9.50!Egr2;;chr15:102087880..102087927,-!p2@Rarg!0.68!9.50!Rarg;;chr15:81633224..81633235,+!p5@Tef!0.68!4.92!Tef;;chr12:57796615..57796687,+!p1@Pax9!0.68!3.77!Pax9;;chr12:57637595..57637608,-!p7@Nkx2-1!0.68!3.77!Nkx2-1;;chr11:85703483..85703508,+!p2@Tbx4!0.68!3.77!Tbx4;;chr2:147871948..147871977,-!p3@Foxa2!0.68!3.77!Foxa2;;chr4:63064364..63064384,-!p1@Akna!0.67!12.13!Akna;;chr4:148178529..148178548,+!p3@Casz1!0.67!9.67!Casz1;;chr2:91035197..91035237,-!p1@Nr1h3!0.67!8.36!Nr1h3;;chr13:55932591..55932622,-!p1@Pitx1!0.67!4.59!Pitx1;;chr6:98978245..98978289,-!p1@Foxp1!0.66!61.94!Foxp1;;chr4:94718861..94718872,-!p2@Jun!0.66!31.13!Jun;;chr6:144730427..144730508,-!p1@Sox5!0.66!25.56!Sox5;;chr19:26681929..26681987,+!p4@Smarca2!0.66!23.10!Smarca2;;chr14:65568469..65568511,-!p2@Hmbox1!0.66!13.27!Hmbox1;;chr16:43619057..43619078,+!p8@Zbtb20!0.66!8.03!Zbtb20;;chr9:63869834..63869849,-!p5@Smad6!0.66!6.55!Smad6;;chr6:88143711..88143717,+!p2@Gata2!0.66!6.06!Gata2;;chr9:24578720..24578735,-!p1@Tbx20!0.66!3.60!Tbx20;;chr17:14011485..14011507,+!p2@Mllt4!0.66!3.60!Mllt4;;chr5:104121391..104121450,+!p3@Aff1!0.65!20.65!Aff1;;chrX:137077653..137077669,-!p3@Tsc22d3!0.65!17.86!Tsc22d3;;chr2:160698288..160698358,-!p3@Zhx3!0.65!11.96!Zhx3;;chr9:96653072..96653154,-!p1@Zbtb38!0.65!10.32!Zbtb38;;chr6:52114821..52114828,-!p1@Hoxa2!0.65!5.57!Hoxa2;;chr19:5560600..5560617,-!p1@Ovol1!0.65!4.42!Ovol1;;chr8:123260252..123260264,+!p1@Irf8!0.64!27.69!Irf8;;chr14:98568761..98568814,-!p2@Dach1!0.64!26.55!Dach1;;chr2:173044380..173044432,-!p1@Zbp1!0.64!9.01!Zbp1;;chr13:99954688..99954710,+!p2@Zfp366!0.64!7.21!Zfp366;;chr3:34548909..34548927,+!p1@Sox2!0.64!6.23!Sox2;;chr4:94718879..94718898,-!p1@Jun!0.63!280.04!Jun;;chr16:15887371..15887385,+!p1@Cebpd!0.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| ||
Line 44: | Line 45: | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11109 | |library_id=CNhs11109 | ||
|library_id_phase_based=2:CNhs11109 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;822 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;822 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/lung%252c%2520neonate%2520N20.CNhs11109.822-18A4.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/lung%252c%2520neonate%2520N20.CNhs11109.822-18A4.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/lung%252c%2520neonate%2520N20.CNhs11109.822-18A4.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/lung%252c%2520neonate%2520N20.CNhs11109.822-18A4.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/lung%252c%2520neonate%2520N20.CNhs11109.822-18A4.mm9.nobarcode.rdna.fa.gz | |||
|name=lung, neonate N20 | |name=lung, neonate N20 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 49: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11109,LSID734,release008,COMPLETED | |profile_hcage=CNhs11109,LSID734,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.167531273012693,0.0659019793256198,0,0.0659019793256198,0.123108665731713,0,0.719461925574848,0,0.332959765750234,0,0.0659019793256198,0.0387694253351712,0.0659019793256198,0,0,0,0,0,0.280330472651159,0,0,0,0,0,0.123108665731713,0,0.0568643603666489,0,0,0,0,0,0.389277458807977,0,0,0,0,0.0333471656472951,0.262901098037908,0,-0.0750832511433945,-0.135225686955525,-0.0962191911945712,0,0,0,0,0,0,0.0659019793256198,0,0,0,0.517734986808741,0,0.512137934398049,0,0,0,0,0,0,0.245913333194089,0.0128134904564645,0.0659019793256198,0.103894666160079,0.141567188343,0.110728356510789,-0.0349823770393697,0.204760778158346,0.0659019793256198,0.253832182687624,0.0357117366586259,0.104393026357721,0.17364944681578,0,0.0570056029927278,-0.00655998633100963,0.253070798781732,-0.0788315948399074,0,0,0,0,0.1197757130707,0,0.140046571887419,0.234281539175147,0.151576011618776,0.0659019793256198,0,0,0,0.0659019793256198 | |repeat_enrich_byfamily=0.167531273012693,0.0659019793256198,0,0.0659019793256198,0.123108665731713,0,0.719461925574848,0,0.332959765750234,0,0.0659019793256198,0.0387694253351712,0.0659019793256198,0,0,0,0,0,0.280330472651159,0,0,0,0,0,0.123108665731713,0,0.0568643603666489,0,0,0,0,0,0.389277458807977,0,0,0,0,0.0333471656472951,0.262901098037908,0,-0.0750832511433945,-0.135225686955525,-0.0962191911945712,0,0,0,0,0,0,0.0659019793256198,0,0,0,0.517734986808741,0,0.512137934398049,0,0,0,0,0,0,0.245913333194089,0.0128134904564645,0.0659019793256198,0.103894666160079,0.141567188343,0.110728356510789,-0.0349823770393697,0.204760778158346,0.0659019793256198,0.253832182687624,0.0357117366586259,0.104393026357721,0.17364944681578,0,0.0570056029927278,-0.00655998633100963,0.253070798781732,-0.0788315948399074,0,0,0,0,0.1197757130707,0,0.140046571887419,0.234281539175147,0.151576011618776,0.0659019793256198,0,0,0,0.0659019793256198 | ||
Line 86: | Line 97: | ||
|top_motifs=FOX{I1,J2}:2.89071856743;FOXO1,3,4:2.65386322679;EBF1:2.45190575498;FOX{D1,D2}:2.32729463788;IKZF2:2.21300452152;FOXN1:2.04793338675;BPTF:1.96618412487;NKX2-1,4:1.93889633273;FOXP1:1.83286531599;IRF1,2:1.69849805126;ALX1:1.66749011539;NFATC1..3:1.61931119325;NKX6-1,2:1.57317929802;HBP1_HMGB_SSRP1_UBTF:1.52350188604;TLX2:1.49208037735;IKZF1:1.4771106434;SPIB:1.39473707637;NKX3-1:1.36942923043;ETS1,2:1.33716472893;XCPE1{core}:1.31676310253;TEAD1:1.31272297858;T:1.29525721601;STAT2,4,6:1.28114942842;GTF2A1,2:1.25925696932;EP300:1.20875508296;NFIL3:1.13362395432;TFCP2:1.10254073432;SP1:0.998207275991;TOPORS:0.996825117933;TLX1..3_NFIC{dimer}:0.974056928132;SRF:0.900712881477;MYBL2:0.89030081538;NFIX:0.888955417766;ZNF148:0.868218096586;HAND1,2:0.867610880027;NKX3-2:0.823070885736;HMX1:0.790397537299;PITX1..3:0.789009279548;SPI1:0.785651272804;DMAP1_NCOR{1,2}_SMARC:0.778751396388;TEF:0.7522619444;ZNF384:0.750262355819;PRDM1:0.742722568749;CEBPA,B_DDIT3:0.734262438532;ELF1,2,4:0.727737556338;SPZ1:0.721169552883;SOX5:0.715444184944;TBX4,5:0.713612987767;BACH2:0.685868656177;FOS_FOS{B,L1}_JUN{B,D}:0.650590025449;IRF7:0.645653847785;GLI1..3:0.638861283739;MEF2{A,B,C,D}:0.615672496232;TGIF1:0.601495417541;MAZ:0.598557197807;RBPJ:0.57093890011;FOXQ1:0.559178455581;GATA4:0.557399230485;NKX2-2,8:0.549293120256;TFAP4:0.54177641163;STAT5{A,B}:0.509266075587;FOXD3:0.500721436257;RFX2..5_RFXANK_RFXAP:0.49955936641;AR:0.497174992178;SNAI1..3:0.471909205718;TBP:0.469678586511;HMGA1,2:0.463716365961;SMAD1..7,9:0.462876756527;ZNF238:0.461921174011;ZEB1:0.45593232265;RXRA_VDR{dimer}:0.435449392716;GTF2I:0.406115524747;PAX4:0.405326287377;CRX:0.3824667157;MTF1:0.368312221724;TFAP2{A,C}:0.336475199664;GZF1:0.297209863305;ZBTB16:0.286141916188;RXR{A,B,G}:0.273862419454;GATA6:0.264192366407;POU5F1:0.233451058409;FOSL2:0.230829320655;TFAP2B:0.215134152331;NFKB1_REL_RELA:0.207489247412;PATZ1:0.192722198998;NR1H4:0.180802003106;GCM1,2:0.173563022785;RREB1:0.15822537673;RUNX1..3:0.134084435295;PAX5:0.126807419358;AIRE:0.108640411998;NR3C1:0.103826267207;FOXA2:0.0783726749776;FOX{F1,F2,J1}:0.0672851645459;MYOD1:0.0301940551666;MYFfamily:-0.0110660082095;TP53:-0.0209803402392;LEF1_TCF7_TCF7L1,2:-0.0298001748253;KLF4:-0.0596683227516;ESR1:-0.0661007900829;NFE2L1:-0.0738544218521;CDC5L:-0.0768746798479;ZIC1..3:-0.0798770915915;ALX4:-0.114593956015;HIC1:-0.114937277237;RFX1:-0.131226636065;HLF:-0.157511697517;MED-1{core}:-0.164890871614;JUN:-0.239720937378;NFE2L2:-0.2434374726;EVI1:-0.246622183871;NKX2-3_NKX2-5:-0.249761123063;DBP:-0.259625574364;FOXP3:-0.269032705699;ZNF423:-0.285322701157;FOXL1:-0.2944367962;ZFP161:-0.299911687914;POU2F1..3:-0.306868622547;SOX2:-0.310324352675;EGR1..3:-0.321994122407;GFI1:-0.331186990872;HOX{A4,D4}:-0.345695896749;POU6F1:-0.349826300828;LMO2:-0.379835849914;HNF4A_NR2F1,2:-0.381498566328;NHLH1,2:-0.389124318697;STAT1,3:-0.396059561228;SOX{8,9,10}:-0.398949469754;ATF6:-0.40788328769;HNF1A:-0.419375533946;ZBTB6:-0.424437771255;HOX{A5,B5}:-0.444222269978;MZF1:-0.480478885893;ATF2:-0.499630885888;NR6A1:-0.52289193233;NFE2:-0.53989612895;MTE{core}:-0.55760483948;REST:-0.5674385577;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.582901468019;GFI1B:-0.608677384481;MAFB:-0.620683994241;SREBF1,2:-0.638741304797;TAL1_TCF{3,4,12}:-0.64766246371;ARID5B:-0.658833836746;UFEwm:-0.659651982072;CUX2:-0.669778217714;HSF1,2:-0.687127035742;ATF4:-0.700506321937;TFDP1:-0.720014815303;PPARG:-0.724268694591;MYB:-0.733246095392;POU1F1:-0.750886780993;bHLH_family:-0.75976215661;CREB1:-0.797974564168;ESRRA:-0.808836054378;CDX1,2,4:-0.808924176956;FOXM1:-0.809299390115;PAX1,9:-0.815686892046;PDX1:-0.822239251259;VSX1,2:-0.839522283799;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.896153803195;BREu{core}:-0.925142840952;PAX2:-0.989831704651;PRRX1,2:-0.991481370782;LHX3,4:-0.994612170367;POU3F1..4:-1.00734337765;PBX1:-1.01528277407;ADNP_IRX_SIX_ZHX:-1.03160618978;NANOG:-1.03293228994;ATF5_CREB3:-1.03661384172;E2F1..5:-1.04187392464;AHR_ARNT_ARNT2:-1.04412280121;SOX17:-1.05604023589;HOXA9_MEIS1:-1.28763404824;ONECUT1,2:-1.29541731924;PAX6:-1.30600947461;OCT4_SOX2{dimer}:-1.3135273245;RORA:-1.39831269945;NR5A1,2:-1.40839769582;ELK1,4_GABP{A,B1}:-1.41554938787;HIF1A:-1.447571804;NRF1:-1.47224827928;NFY{A,B,C}:-1.72147354798;PAX8:-1.7889591786;EN1,2:-1.84378978925;ZNF143:-1.88068818009;YY1:-2.25915639333;HES1:-2.4285825343;NANOG{mouse}:-2.96871191043 | |top_motifs=FOX{I1,J2}:2.89071856743;FOXO1,3,4:2.65386322679;EBF1:2.45190575498;FOX{D1,D2}:2.32729463788;IKZF2:2.21300452152;FOXN1:2.04793338675;BPTF:1.96618412487;NKX2-1,4:1.93889633273;FOXP1:1.83286531599;IRF1,2:1.69849805126;ALX1:1.66749011539;NFATC1..3:1.61931119325;NKX6-1,2:1.57317929802;HBP1_HMGB_SSRP1_UBTF:1.52350188604;TLX2:1.49208037735;IKZF1:1.4771106434;SPIB:1.39473707637;NKX3-1:1.36942923043;ETS1,2:1.33716472893;XCPE1{core}:1.31676310253;TEAD1:1.31272297858;T:1.29525721601;STAT2,4,6:1.28114942842;GTF2A1,2:1.25925696932;EP300:1.20875508296;NFIL3:1.13362395432;TFCP2:1.10254073432;SP1:0.998207275991;TOPORS:0.996825117933;TLX1..3_NFIC{dimer}:0.974056928132;SRF:0.900712881477;MYBL2:0.89030081538;NFIX:0.888955417766;ZNF148:0.868218096586;HAND1,2:0.867610880027;NKX3-2:0.823070885736;HMX1:0.790397537299;PITX1..3:0.789009279548;SPI1:0.785651272804;DMAP1_NCOR{1,2}_SMARC:0.778751396388;TEF:0.7522619444;ZNF384:0.750262355819;PRDM1:0.742722568749;CEBPA,B_DDIT3:0.734262438532;ELF1,2,4:0.727737556338;SPZ1:0.721169552883;SOX5:0.715444184944;TBX4,5:0.713612987767;BACH2:0.685868656177;FOS_FOS{B,L1}_JUN{B,D}:0.650590025449;IRF7:0.645653847785;GLI1..3:0.638861283739;MEF2{A,B,C,D}:0.615672496232;TGIF1:0.601495417541;MAZ:0.598557197807;RBPJ:0.57093890011;FOXQ1:0.559178455581;GATA4:0.557399230485;NKX2-2,8:0.549293120256;TFAP4:0.54177641163;STAT5{A,B}:0.509266075587;FOXD3:0.500721436257;RFX2..5_RFXANK_RFXAP:0.49955936641;AR:0.497174992178;SNAI1..3:0.471909205718;TBP:0.469678586511;HMGA1,2:0.463716365961;SMAD1..7,9:0.462876756527;ZNF238:0.461921174011;ZEB1:0.45593232265;RXRA_VDR{dimer}:0.435449392716;GTF2I:0.406115524747;PAX4:0.405326287377;CRX:0.3824667157;MTF1:0.368312221724;TFAP2{A,C}:0.336475199664;GZF1:0.297209863305;ZBTB16:0.286141916188;RXR{A,B,G}:0.273862419454;GATA6:0.264192366407;POU5F1:0.233451058409;FOSL2:0.230829320655;TFAP2B:0.215134152331;NFKB1_REL_RELA:0.207489247412;PATZ1:0.192722198998;NR1H4:0.180802003106;GCM1,2:0.173563022785;RREB1:0.15822537673;RUNX1..3:0.134084435295;PAX5:0.126807419358;AIRE:0.108640411998;NR3C1:0.103826267207;FOXA2:0.0783726749776;FOX{F1,F2,J1}:0.0672851645459;MYOD1:0.0301940551666;MYFfamily:-0.0110660082095;TP53:-0.0209803402392;LEF1_TCF7_TCF7L1,2:-0.0298001748253;KLF4:-0.0596683227516;ESR1:-0.0661007900829;NFE2L1:-0.0738544218521;CDC5L:-0.0768746798479;ZIC1..3:-0.0798770915915;ALX4:-0.114593956015;HIC1:-0.114937277237;RFX1:-0.131226636065;HLF:-0.157511697517;MED-1{core}:-0.164890871614;JUN:-0.239720937378;NFE2L2:-0.2434374726;EVI1:-0.246622183871;NKX2-3_NKX2-5:-0.249761123063;DBP:-0.259625574364;FOXP3:-0.269032705699;ZNF423:-0.285322701157;FOXL1:-0.2944367962;ZFP161:-0.299911687914;POU2F1..3:-0.306868622547;SOX2:-0.310324352675;EGR1..3:-0.321994122407;GFI1:-0.331186990872;HOX{A4,D4}:-0.345695896749;POU6F1:-0.349826300828;LMO2:-0.379835849914;HNF4A_NR2F1,2:-0.381498566328;NHLH1,2:-0.389124318697;STAT1,3:-0.396059561228;SOX{8,9,10}:-0.398949469754;ATF6:-0.40788328769;HNF1A:-0.419375533946;ZBTB6:-0.424437771255;HOX{A5,B5}:-0.444222269978;MZF1:-0.480478885893;ATF2:-0.499630885888;NR6A1:-0.52289193233;NFE2:-0.53989612895;MTE{core}:-0.55760483948;REST:-0.5674385577;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.582901468019;GFI1B:-0.608677384481;MAFB:-0.620683994241;SREBF1,2:-0.638741304797;TAL1_TCF{3,4,12}:-0.64766246371;ARID5B:-0.658833836746;UFEwm:-0.659651982072;CUX2:-0.669778217714;HSF1,2:-0.687127035742;ATF4:-0.700506321937;TFDP1:-0.720014815303;PPARG:-0.724268694591;MYB:-0.733246095392;POU1F1:-0.750886780993;bHLH_family:-0.75976215661;CREB1:-0.797974564168;ESRRA:-0.808836054378;CDX1,2,4:-0.808924176956;FOXM1:-0.809299390115;PAX1,9:-0.815686892046;PDX1:-0.822239251259;VSX1,2:-0.839522283799;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.896153803195;BREu{core}:-0.925142840952;PAX2:-0.989831704651;PRRX1,2:-0.991481370782;LHX3,4:-0.994612170367;POU3F1..4:-1.00734337765;PBX1:-1.01528277407;ADNP_IRX_SIX_ZHX:-1.03160618978;NANOG:-1.03293228994;ATF5_CREB3:-1.03661384172;E2F1..5:-1.04187392464;AHR_ARNT_ARNT2:-1.04412280121;SOX17:-1.05604023589;HOXA9_MEIS1:-1.28763404824;ONECUT1,2:-1.29541731924;PAX6:-1.30600947461;OCT4_SOX2{dimer}:-1.3135273245;RORA:-1.39831269945;NR5A1,2:-1.40839769582;ELK1,4_GABP{A,B1}:-1.41554938787;HIF1A:-1.447571804;NRF1:-1.47224827928;NFY{A,B,C}:-1.72147354798;PAX8:-1.7889591786;EN1,2:-1.84378978925;ZNF143:-1.88068818009;YY1:-2.25915639333;HES1:-2.4285825343;NANOG{mouse}:-2.96871191043 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:822-18A4;search_select_hide=table117:822-18A4 | |||
}} | }} |
Latest revision as of 19:20, 4 June 2020
Name: | lung, neonate N20 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs11109 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs11109
0 | 0 |
1 | 0 |
10 | 0.0659 |
100 | 0 |
1000 | 0.059 |
1001 | 0.253 |
1002 | -0.0363 |
1003 | 0.193 |
1004 | 0 |
1005 | 0.2 |
1006 | 0.152 |
1007 | 0.0373 |
1008 | 0.0659 |
1009 | 0.441 |
101 | -0.0759 |
1010 | 0 |
1011 | -0.0788 |
1012 | 0.219 |
1013 | 0.0964 |
1014 | 0.0791 |
1015 | -0.223 |
1016 | 0.0534 |
1017 | 0.0659 |
1018 | 0.174 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | -0.0487 |
1022 | 0.261 |
1023 | 0.0659 |
1024 | 0.598 |
1025 | 1.222 |
1026 | 0 |
1027 | 0 |
1028 | 0 |
1029 | 0.395 |
103 | 0.113 |
1030 | 0.394 |
1031 | 0.279 |
1032 | 0.0744 |
1033 | -5.948308e-4 |
1034 | 0.0874 |
1035 | 0.0659 |
1036 | -0.0392 |
1037 | 0 |
1038 | 0.478 |
1039 | 0.163 |
104 | 0 |
1040 | 0.514 |
1041 | 0.297 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11109
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11109
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.544 |
10 | 10 | 0.999 |
100 | 100 | 0.519 |
101 | 101 | 0.404 |
102 | 102 | 0.479 |
103 | 103 | 0.141 |
104 | 104 | 0.836 |
105 | 105 | 0.389 |
106 | 106 | 8.99126e-4 |
107 | 107 | 0.00384 |
108 | 108 | 0.969 |
109 | 109 | 0.258 |
11 | 11 | 0.879 |
110 | 110 | 0.678 |
111 | 111 | 0.729 |
112 | 112 | 0.227 |
113 | 113 | 0.876 |
114 | 114 | 0.386 |
115 | 115 | 0.654 |
116 | 116 | 0.956 |
117 | 117 | 0.211 |
118 | 118 | 0.893 |
119 | 119 | 0.056 |
12 | 12 | 0.694 |
120 | 120 | 0.314 |
121 | 121 | 0.315 |
122 | 122 | 0.681 |
123 | 123 | 0.616 |
124 | 124 | 0.418 |
125 | 125 | 0.625 |
126 | 126 | 0.205 |
127 | 127 | 0.109 |
128 | 128 | 0.00149 |
129 | 129 | 0.1 |
13 | 13 | 0.0398 |
130 | 130 | 0.012 |
131 | 131 | 0.154 |
132 | 132 | 0.395 |
133 | 133 | 0.73 |
134 | 134 | 0.937 |
135 | 135 | 0.528 |
136 | 136 | 0.256 |
137 | 137 | 0.248 |
138 | 138 | 0.0474 |
139 | 139 | 0.469 |
14 | 14 | 0.248 |
140 | 140 | 0.477 |
141 | 141 | 0.152 |
142 | 142 | 0.0556 |
143 | 143 | 0.717 |
144 | 144 | 0.966 |
145 | 145 | 0.18 |
146 | 146 | 0.813 |
147 | 147 | 0.767 |
148 | 148 | 0.47 |
149 | 149 | 0.0434 |
15 | 15 | 0.325 |
150 | 150 | 0.244 |
151 | 151 | 0.146 |
152 | 152 | 0.0451 |
153 | 153 | 0.446 |
154 | 154 | 0.32 |
155 | 155 | 0.572 |
156 | 156 | 0.0824 |
157 | 157 | 0.812 |
158 | 158 | 0.663 |
159 | 159 | 0.0228 |
160 | 160 | 0.0734 |
161 | 161 | 0.897 |
162 | 162 | 0.391 |
163 | 163 | 0.885 |
164 | 164 | 0.557 |
165 | 165 | 0.688 |
166 | 166 | 0.198 |
167 | 167 | 0.604 |
168 | 168 | 0.818 |
169 | 169 | 0.00745 |
17 | 17 | 0.252 |
18 | 18 | 0.258 |
19 | 19 | 0.0371 |
2 | 2 | 0.163 |
20 | 20 | 0.306 |
21 | 21 | 0.599 |
22 | 22 | 0.128 |
23 | 23 | 0.0165 |
24 | 24 | 0.317 |
25 | 25 | 0.359 |
26 | 26 | 0.0662 |
27 | 27 | 0.743 |
28 | 28 | 0.458 |
29 | 29 | 0.529 |
3 | 3 | 0.481 |
30 | 30 | 0.749 |
31 | 31 | 0.819 |
32 | 32 | 0.703 |
33 | 33 | 0.912 |
34 | 34 | 0.53 |
35 | 35 | 0.311 |
36 | 36 | 0.849 |
37 | 37 | 0.0468 |
38 | 38 | 0.242 |
39 | 39 | 0.153 |
4 | 4 | 0.619 |
40 | 40 | 0.701 |
41 | 41 | 0.454 |
42 | 42 | 0.499 |
43 | 43 | 0.13 |
44 | 44 | 0.448 |
45 | 45 | 0.157 |
46 | 46 | 0.586 |
47 | 47 | 0.602 |
48 | 48 | 0.902 |
49 | 49 | 0.232 |
5 | 5 | 0.441 |
50 | 50 | 0.398 |
51 | 51 | 0.434 |
52 | 52 | 0.0639 |
53 | 53 | 0.299 |
54 | 54 | 0.483 |
55 | 55 | 0.985 |
56 | 56 | 0.295 |
57 | 57 | 0.657 |
58 | 58 | 0.539 |
59 | 59 | 0.095 |
6 | 6 | 0.926 |
60 | 60 | 0.0413 |
61 | 61 | 0.869 |
62 | 62 | 0.509 |
63 | 63 | 0.154 |
64 | 64 | 0.72 |
65 | 65 | 0.142 |
66 | 66 | 0.0715 |
67 | 67 | 0.358 |
68 | 68 | 0.669 |
69 | 69 | 0.794 |
7 | 7 | 0.306 |
70 | 70 | 0.234 |
71 | 71 | 0.264 |
72 | 72 | 0.93 |
73 | 73 | 0.194 |
74 | 74 | 0.799 |
75 | 75 | 0.807 |
76 | 76 | 0.502 |
77 | 77 | 0.185 |
78 | 78 | 0.882 |
79 | 79 | 0.799 |
8 | 8 | 0.983 |
80 | 80 | 0.854 |
81 | 81 | 0.929 |
82 | 82 | 0.234 |
83 | 83 | 0.313 |
84 | 84 | 0.378 |
85 | 85 | 0.0325 |
86 | 86 | 0.885 |
87 | 87 | 0.0219 |
88 | 88 | 0.739 |
89 | 89 | 0.309 |
9 | 9 | 0.159 |
90 | 90 | 0.908 |
91 | 91 | 0.336 |
92 | 92 | 0.0722 |
93 | 93 | 0.444 |
94 | 94 | 0.853 |
95 | 95 | 0.685 |
96 | 96 | 0.378 |
97 | 97 | 0.66 |
98 | 98 | 0.856 |
99 | 99 | 0.24 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11109
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000479 (tissue)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0005177 (trunk region element)
0000117 (respiratory tube)
0000171 (respiration organ)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000308 (mouse neonate N20 sample)
0011428 (mouse lung- neonate N20 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)