FF:10712-109I1: Difference between revisions

Latest revision as of 15:01, 3 June 2020

Name:	hairy cell leukemia cell line:Mo
Species:	Human (Homo sapiens)
Library ID:	CNhs11843
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	NA
cell type	t cell
cell line	Mo
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005930

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11843		CAGE		DRX007902		DRR008774

Accession ID Hg19

Library id		BAM		CTSS
CNhs11843		DRZ000199		DRZ001584

Accession ID Hg38

Library id		BAM		CTSS
CNhs11843		DRZ011549		DRZ012934

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00005930

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
RDhi10079		RNA-Seq		DRX057136		DRR062895

Accession ID Hg19

Library id		BAM		CTSS
RDhi10079		DRZ007971

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.476
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.438
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0403
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0757
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0765
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0176
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0162
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0105
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.377
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.253
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.00942
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0.101
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.11
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.101
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.648
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.11
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0255
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0963
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0391
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.101
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.455
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.00985
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.286
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	1.17

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11843

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00865
MA0003.1	MA0003.1	0.608
MA0004.1	MA0004.1	0.191
MA0006.1	MA0006.1	0.218
MA0007.1	MA0007.1	0.987
MA0009.1	MA0009.1	0.82
MA0014.1	MA0014.1	0.729
MA0017.1	MA0017.1	0.2
MA0018.2	MA0018.2	2.03624e-4
MA0019.1	MA0019.1	0.268
MA0024.1	MA0024.1	2.38578e-4
MA0025.1	MA0025.1	0.179
MA0027.1	MA0027.1	0.15
MA0028.1	MA0028.1	0.00847
MA0029.1	MA0029.1	0.958
MA0030.1	MA0030.1	0.00134
MA0031.1	MA0031.1	0.0141
MA0035.2	MA0035.2	0.00957
MA0038.1	MA0038.1	0.435
MA0039.2	MA0039.2	0.722
MA0040.1	MA0040.1	0.0122
MA0041.1	MA0041.1	0.0317
MA0042.1	MA0042.1	0.0938
MA0043.1	MA0043.1	0.535
MA0046.1	MA0046.1	0.17
MA0047.2	MA0047.2	0.306
MA0048.1	MA0048.1	0.22
MA0050.1	MA0050.1	0.512
MA0051.1	MA0051.1	0.843
MA0052.1	MA0052.1	0.154
MA0055.1	MA0055.1	0.00536
MA0057.1	MA0057.1	0.951
MA0058.1	MA0058.1	0.218
MA0059.1	MA0059.1	0.0514
MA0060.1	MA0060.1	2.89195e-4
MA0061.1	MA0061.1	1.36793e-9
MA0062.2	MA0062.2	3.65188e-5
MA0065.2	MA0065.2	0.0148
MA0066.1	MA0066.1	0.911
MA0067.1	MA0067.1	0.147
MA0068.1	MA0068.1	0.0651
MA0069.1	MA0069.1	0.438
MA0070.1	MA0070.1	0.901
MA0071.1	MA0071.1	0.37
MA0072.1	MA0072.1	0.33
MA0073.1	MA0073.1	0.722
MA0074.1	MA0074.1	0.817
MA0076.1	MA0076.1	0.00677
MA0077.1	MA0077.1	0.616
MA0078.1	MA0078.1	0.846
MA0079.2	MA0079.2	0.315
MA0080.2	MA0080.2	0.0018
MA0081.1	MA0081.1	0.901
MA0083.1	MA0083.1	0.715
MA0084.1	MA0084.1	0.117
MA0087.1	MA0087.1	0.104
MA0088.1	MA0088.1	0.0294
MA0090.1	MA0090.1	4.57039e-5
MA0091.1	MA0091.1	0.197
MA0092.1	MA0092.1	0.951
MA0093.1	MA0093.1	0.167
MA0099.2	MA0099.2	0.0172
MA0100.1	MA0100.1	0.522
MA0101.1	MA0101.1	6.75242e-9
MA0102.2	MA0102.2	0.0288
MA0103.1	MA0103.1	0.329
MA0104.2	MA0104.2	0.00521
MA0105.1	MA0105.1	2.65572e-9
MA0106.1	MA0106.1	0.136
MA0107.1	MA0107.1	3.13391e-9
MA0108.2	MA0108.2	2.61233e-4
MA0111.1	MA0111.1	0.513
MA0112.2	MA0112.2	0.109
MA0113.1	MA0113.1	0.89
MA0114.1	MA0114.1	0.0438
MA0115.1	MA0115.1	0.258
MA0116.1	MA0116.1	1.52088e-5
MA0117.1	MA0117.1	0.315
MA0119.1	MA0119.1	0.848
MA0122.1	MA0122.1	0.872
MA0124.1	MA0124.1	0.499
MA0125.1	MA0125.1	0.963
MA0131.1	MA0131.1	0.152
MA0135.1	MA0135.1	0.128
MA0136.1	MA0136.1	4.24382e-4
MA0137.2	MA0137.2	0.0304
MA0138.2	MA0138.2	0.483
MA0139.1	MA0139.1	0.0884
MA0140.1	MA0140.1	0.0995
MA0141.1	MA0141.1	0.0395
MA0142.1	MA0142.1	0.847
MA0143.1	MA0143.1	0.508
MA0144.1	MA0144.1	0.0585
MA0145.1	MA0145.1	0.762
MA0146.1	MA0146.1	0.142
MA0147.1	MA0147.1	0.00219
MA0148.1	MA0148.1	0.225
MA0149.1	MA0149.1	0.369
MA0150.1	MA0150.1	0.736
MA0152.1	MA0152.1	0.102
MA0153.1	MA0153.1	4.84111e-4
MA0154.1	MA0154.1	0.0278
MA0155.1	MA0155.1	0.936
MA0156.1	MA0156.1	0.00395
MA0157.1	MA0157.1	0.132
MA0159.1	MA0159.1	0.202
MA0160.1	MA0160.1	0.051
MA0162.1	MA0162.1	0.617
MA0163.1	MA0163.1	4.85318e-12
MA0164.1	MA0164.1	0.67
MA0258.1	MA0258.1	0.0719
MA0259.1	MA0259.1	0.0474

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11843

Novel motif	Logo	P-value
1	1	0.0136
10	10	0.019
100	100	0.214
101	101	0.811
102	102	0.307
103	103	0.48
104	104	0.685
105	105	0.796
106	106	0.88
107	107	0.361
108	108	0.997
109	109	0.0477
11	11	0.0827
110	110	0.16
111	111	0.0344
112	112	0.172
113	113	0.702
114	114	0.11
115	115	0.964
116	116	0.244
117	117	0.0329
118	118	0.172
119	119	0.105
12	12	0.902
120	120	0.834
121	121	0.929
122	122	1
123	123	2.13271e-4
124	124	0.257
125	125	0.298
126	126	0.995
127	127	0.415
128	128	0.736
129	129	0.299
13	13	0.0177
130	130	0.768
131	131	0.812
132	132	0.565
133	133	0.934
134	134	0.702
135	135	0.445
136	136	0.119
137	137	0.638
138	138	0.877
139	139	0.182
14	14	0.915
140	140	0.115
141	141	0.72
142	142	0.771
143	143	0.0711
144	144	0.649
145	145	0.509
146	146	0.793
147	147	0.0842
148	148	0.129
149	149	0.0654
15	15	0.205
150	150	0.904
151	151	0.884
152	152	0.253
153	153	0.945
154	154	0.711
155	155	0.0287
156	156	0.384
157	157	0.97
158	158	0.256
159	159	0.102
16	16	0.744
160	160	0.252
161	161	0.826
162	162	0.921
163	163	0.274
164	164	0.429
165	165	0.488
166	166	0.0493
167	167	0.0483
168	168	0.543
169	169	0.52
17	17	0.544
18	18	0.172
19	19	0.719
2	2	0.323
20	20	0.117
21	21	0.113
22	22	0.867
23	23	0.494
24	24	0.15
25	25	0.0998
26	26	0.141
27	27	0.931
28	28	0.905
29	29	0.0188
3	3	0.141
30	30	0.0796
31	31	0.68
32	32	0.85
33	33	0.555
34	34	0.611
35	35	0.162
36	36	0.0405
37	37	0.321
38	38	0.81
39	39	0.488
4	4	0.204
40	40	0.192
41	41	0.652
42	42	0.171
43	43	0.358
44	44	0.0561
45	45	0.339
46	46	0.13
47	47	0.11
48	48	0.218
49	49	0.122
5	5	0.912
50	50	0.74
51	51	0.494
52	52	0.438
53	53	0.586
54	54	0.81
55	55	0.0539
56	56	0.864
57	57	0.137
58	58	0.0992
59	59	0.778
6	6	0.781
60	60	0.812
61	61	0.149
62	62	0.0698
63	63	0.656
64	64	0.168
65	65	0.945
66	66	0.0437
67	67	0.207
68	68	0.153
69	69	0.565
7	7	0.22
70	70	0.305
71	71	0.0351
72	72	0.82
73	73	0.704
74	74	0.822
75	75	0.0396
76	76	0.487
77	77	0.465
78	78	0.266
79	79	0.869
8	8	0.348
80	80	0.36
81	81	0.0803
82	82	0.467
83	83	0.0478
84	84	0.115
85	85	0.461
86	86	0.388
87	87	0.397
88	88	0.827
89	89	0.987
9	9	0.641
90	90	0.242
91	91	0.532
92	92	0.874
93	93	0.975
94	94	0.229
95	95	0.043
96	96	0.4
97	97	0.0493
98	98	0.288
99	99	0.135

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11843

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101014 Mo-T cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000084 (T cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0103681 (hairy cell leukemia cell line sample)
0101014 (Mo-T cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007796
+|DRA_sample_Accession=CAGE@SAMD00005930
-|accession_numbers=CAGE;DRX007902;DRR008774;DRZ000199;DRZ001584
+|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005930
+|accession_numbers=CAGE;DRX007902;DRR008774;DRZ000199;DRZ001584;DRZ011549;DRZ012934
+|accession_numbers_RNASeq=RNA-Seq;DRX057136;DRR062895;DRZ007971
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000084
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.63!421.93!IRF4;;chr1:3569072..3569093,+!p1@TP73!2.51!324.93!TP73;;chr20:62680984..62680999,-!p1@SOX18!2.11!167.20!SOX18;;chr1:3598871..3598890,+!p11@TP73!2.04!109.89!TP73;;chr1:25291475..25291511,-!p2@RUNX3!1.92!83.07!RUNX3;;chr18:55102598..55102623,+!p1@ONECUT2!1.92!83.07!ONECUT2;;chr1:25256756..25256774,-!p1@RUNX3!1.91!146.95!RUNX3;;chr14:75988831..75988847,+!p2@BATF!1.89!75.97!BATF;;chr10:104155659..104155676,+!p4@NFKB2!1.81!78.34!NFKB2;;chr13:28494130..28494168,+!p1@PDX1!1.79!61.25!PDX1;;chr19:50922187..50922204,+!p1@SPIB!1.70!48.90!SPIB;;chr18:55102628..55102646,+!p2@ONECUT2!1.65!43.90!ONECUT2;;chr15:57401426..57401459,+!p20@TCF12!1.63!41.80!TCF12;;chr2:231090471..231090504,+!p2@SP140!1.63!41.27!SP140;;chr6:135502408..135502459,+!p2@MYB!1.60!44.69!MYB;;chr2:231090433..231090469,+!p1@SP140!1.60!39.17!SP140;;chr2:176969228..176969260,+!p1@HOXD11!1.60!38.38!HOXD11;;chr19:36204309..36204335,+!p1@ZBTB32!1.56!34.96!ZBTB32;;chr6:135502501..135502546,+!p1@MYB!1.55!41.27!MYB;;chr14:75988771..75988826,+!p1@BATF!1.54!44.43!BATF;;chr7:128577972..128578047,+!p1@IRF5!1.51!48.90!IRF5;;chr20:50159198..50159299,-!p1@NFATC2!1.50!44.69!NFATC2;;chr10:104155680..104155687,+!p6@NFKB2!1.49!29.97!NFKB2;;chr3:111314186..111314204,-!p1@ZBED2!1.48!29.18!ZBED2;;chr8:11561684..11561751,+!p1@GATA4!1.46!27.87!GATA4;;chr2:176969179..176969226,+!p2@HOXD11!1.41!24.97!HOXD11;;chr3:128212033..128212051,-!p1@GATA2!1.40!24.19!GATA2;;chr1:212873267..212873332,-!p1@BATF3!1.39!31.55!BATF3;;chr17:40441354..40441410,+!p2@STAT5A!1.37!22.35!STAT5A;;chr1:212873162..212873188,-!p3@BATF3!1.35!21.29!BATF3;;chr1:3569135..3569150,+!p3@TP73!1.34!21.03!TP73;;chr15:60884706..60884743,-!p1@RORA!1.32!99.90!RORA;;chr6:106546808..106546833,+!p3@PRDM1!1.32!24.97!PRDM1;;chr12:124968655..124968666,-!p48@NCOR2!1.32!19.98!NCOR2;;chr5:88178983..88179012,-!p1@MEF2C!1.30!142.22!MEF2C;;chr10:104155480..104155534,+!p2@NFKB2!1.28!115.93!NFKB2;;chr6:106534192..106534224,+!p1@PRDM1!1.27!48.90!PRDM1;;chr7:50348268..50348366,+!p4@IKZF1!1.27!17.61!IKZF1;;chr12:124968706..124968748,-!p18@NCOR2!1.26!17.35!NCOR2;;chr14:35873947..35873965,-!p1@NFKBIA!1.24!1008.44!NFKBIA;;chr5:137804484..137804498,+!p2@EGR1!1.24!65.20!EGR1;;chr17:38020392..38020477,-!p1@IKZF3!1.24!16.30!IKZF3;;chr2:61108808..61108821,+!p3@REL!1.22!19.72!REL;;chr1:3568889..3568900,+!p7@TP73!1.22!15.51!TP73;;chr9:2015335..2015370,+!p1@SMARCA2!1.20!177.71!SMARCA2;;chr5:133450365..133450444,+!p1@TCF7!1.20!67.56!TCF7;;chr12:52445218..52445237,+!p1@NR4A1!1.19!178.50!NR4A1;;chr19:42636586..42636607,-!p1@POU2F2!1.19!39.43!POU2F2;;chr4:26322267..26322334,+!p3@RBPJ!1.18!34.18!RBPJ;;chr3:101546827..101546847,+!p2@NFKBIZ!1.18!19.72!NFKBIZ;;chr6:21597765..21597779,+!p2@SOX4!1.17!110.94!SOX4;;chr3:128206762..128206781,-!p2@GATA2!1.17!84.39!GATA2;;chr6:100912785..100912822,-!p1@SIM1!1.17!13.93!SIM1;;chr1:38512457..38512474,-!p1@POU3F1!1.16!14.72!POU3F1;;chr3:18486354..18486377,-!p2@SATB1!1.15!16.56!SATB1;;chrY:21906594..21906622,-!p1@KDM5D!1.15!13.14!KDM5D;;chr2:97202480..97202499,+!p1@ARID5A!1.14!127.50!ARID5A;;chr1:3568870..3568881,+!p5@TP73!1.14!12.88!TP73;;chr2:61108695..61108753,+!p1@REL!1.13!85.44!REL;;chr10:104154415..104154434,+!p5@NFKB2!1.11!11.83!NFKB2;;chr5:88179017..88179046,-!p2@MEF2C!1.10!46.27!MEF2C;;chr1:3569101..3569115,+!p2@TP73!1.10!11.57!TP73;;chr2:8822176..8822196,+!p1@ID2!1.09!1571.01!ID2;;chr1:212873084..212873137,-!p2@BATF3!1.09!11.30!BATF3;;chr2:176972000..176972025,+!p4@HOXD11!1.08!11.04!HOXD11;;chr15:76629123..76629151,+!p1@ISL2!1.07!12.09!ISL2;;chr2:61108878..61108891,+!p5@REL!1.07!10.78!REL;;chr5:137801160..137801176,+!p1@EGR1!1.06!1044.71!EGR1;;chr7:50344289..50344323,+!p1@IKZF1!1.06!10.52!IKZF1;;chr10:104155455..104155479,+!p1@NFKB2!1.05!150.37!NFKB2;;chr11:47400078..47400106,-!p1@SPI1!1.05!10.25!SPI1;;chr1:3568928..3568946,+!p4@TP73!1.05!10.25!TP73;;chr6:106534230..106534254,+!p2@PRDM1!1.04!25.50!PRDM1;;chr2:185463247..185463263,+!p1@ZNF804A!1.04!17.88!ZNF804A;;chr4:26324474..26324501,+!p16@RBPJ!1.04!9.99!RBPJ;;chr4:57522513..57522548,-!p4@HOPX!1.03!9.73!HOPX;;chr6:106546834..106546850,+!p4@PRDM1!1.03!9.73!PRDM1;;chr17:40440359..40440386,+!p4@STAT5A!1.03!9.73!STAT5A;;chr6:21593973..21593988,+!p1@SOX4!1.02!345.17!SOX4;;chr12:48298785..48298828,-!p1@VDR!1.01!49.69!VDR;;chr13:28494109..28494122,+!p2@PDX1!1.01!9.20!PDX1;;chr1:3568961..3568973,+!p6@TP73!1.01!9.20!TP73;;chr6:135502472..135502489,+!p3@MYB!1.00!8.94!MYB;;chr12:24715376..24715432,-!p1@SOX5!0.99!11.30!SOX5;;chr9:2015306..2015323,+!p3@SMARCA2!0.98!22.87!SMARCA2;;chr19:45252008..45252024,+!p2@BCL3!0.97!28.39!BCL3;;chr12:103351444..103351461,+!p1@ASCL1!0.97!8.41!ASCL1;;chr6:42419649..42419673,-!p3@TRERF1!0.96!14.20!TRERF1;;chr17:45810594..45810608,+!p1@TBX21!0.95!7.89!TBX21;;chr6:20402102..20402152,+!p1@E2F3!0.94!33.12!E2F3;;chr7:50344251..50344288,+!p3@IKZF1!0.94!7.62!IKZF1;;chr12:48276548..48276564,-!p3@VDR!0.94!7.62!VDR;;chr2:145188354..145188371,-!p34@ZEB2!0.94!7.62!ZEB2;;chr14:75988851..75988862,+!p3@BATF!0.94!7.62!BATF;;chr12:48298765..48298783,-!p2@VDR!0.93!16.04!VDR;;chr6:10412392..10412409,-!p4@TFAP2A!0.93!8.68!TFAP2A;;chr2:61108771..61108789,+!p4@REL!0.92!11.30!REL;;chr7:50343634..50343717,+!p2@IKZF1!0.91!7.10!IKZF1;;chr17:40440225..40440268,+!p3@STAT5A!0.90!8.94!STAT5A;;chr14:89628064..89628109,-!p4@FOXN3!0.89!14.46!FOXN3;;chr6:144385698..144385742,-!p2@PLAGL1!0.89!8.41!PLAGL1;;chr1:3568911..3568925,+!p9@TP73!0.89!6.84!TP73;;chr19:19729477..19729542,-!p1@PBX4!0.88!14.72!PBX4;;chr7:156803329..156803362,-!p1@MNX1!0.88!6.57!MNX1;;chr13:41593425..41593480,-!p1@ELF1!0.87!43.38!ELF1;;chr19:45579725..45579743,-!p1@ZNF296!0.86!29.44!ZNF296;;chr7:148787768..148787825,-!p1@ZNF786!0.86!21.03!ZNF786;;chr8:72756667..72756736,-!p2@MSC!0.86!9.99!MSC;;chr20:51588873..51588953,+!p1@TSHZ2!0.86!8.41!TSHZ2;;chr6:100912752..100912778,-!p2@SIM1!0.86!6.31!SIM1;;chr10:64576105..64576133,-!p1@EGR2!0.85!12.88!EGR2;;chr6:21597514..21597578,+!p4@SOX4!0.85!10.52!SOX4;;chr4:185395590..185395627,-!p3@IRF2!0.85!7.62!IRF2;;chr17:42287802..42287806,-!p25@UBTF!0.85!6.05!UBTF;;chr1:212873200..212873230,-!p5@BATF3!0.85!6.05!BATF3;;chr19:50432453..50432468,+!p1@ATF5!0.83!347.27!ATF5;;chr3:101568349..101568365,+!p1@NFKBIZ!0.83!323.09!NFKBIZ;;chr15:57511609..57511651,+!p2@TCF12!0.83!9.99!TCF12;;chr19:45254481..45254495,+!p13@BCL3!0.83!5.78!BCL3;;chr6:41700616..41700664,-!p8@TFEB!0.83!5.78!TFEB;;chr17:40440481..40440550,+!p1@STAT5A!0.82!43.38!STAT5A;;chr10:35484053..35484076,+!p1@CREM!0.81!14.46!CREM;;chr17:40440177..40440190,+!p6@STAT5A!0.81!5.52!STAT5A;;chr17:40440446..40440464,+!p5@STAT5A!0.80!5.26!STAT5A;;chr3:111314230..111314241,-!p2@ZBED2!0.80!5.26!ZBED2;;chr3:141747459..141747475,-!p1@TFDP2!0.79!46.79!TFDP2;;chr19:18392236..18392248,-!p2@JUND!0.79!36.80!JUND;;chr15:74833584..74833626,+!p1@ARID3B!0.79!12.62!ARID3B;;chr11:61520075..61520136,+!p1@C11orf9!0.78!11.30!C11orf9;;chr2:176969124..176969155,+!p5@HOXD11!0.78!4.99!HOXD11;;chr1:25291620..25291635,-!p4@RUNX3!0.78!4.99!RUNX3;;chr3:48282587..48282603,+!p1@ZNF589!0.77!23.92!ZNF589;;chr8:72756063..72756125,-!p1@MSC!0.77!10.52!MSC;;chr11:128563948..128564003,+!p1@FLI1!0.76!62.83!FLI1;;chr17:38465413..38465438,+!p5@RARA!0.76!7.89!RARA;;chr11:47237922..47237964,+!p4@DDB2!0.76!5.52!DDB2;;chr13:28494180..28494196,+!p3@PDX1!0.76!4.73!PDX1;;chr18:55102959..55102985,+!p6@ONECUT2!0.76!4.73!ONECUT2;;chr2:16080659..16080685,+!p1@MYCN!0.76!4.73!MYCN;;chr2:175199675..175199688,+!p1@SP9!0.76!4.73!SP9;;chr2:176969097..176969109,+!p3@HOXD11!0.76!4.73!HOXD11;;chr2:231090344..231090361,-!p3@SP110!0.76!4.73!SP110;;chr1:201979703..201979721,+!p2@ELF3!0.76!4.73!ELF3;;chr19:1652555..1652568,-!p2@TCF3!0.75!20.77!TCF3;;chr14:35872453..35872485,-!p2@NFKBIA!0.75!12.36!NFKBIA;;chr19:45971246..45971265,+!p1@FOSB!0.74!93.85!FOSB;;chr4:185395633..185395651,-!p2@IRF2!0.74!7.62!IRF2;;chr2:169312600..169312606,+!p2@CERS6!0.74!7.36!CERS6;;chr14:36989358..36989378,-!p3@NKX2-1!0.74!4.47!NKX2-1;;chr15:60296442..60296464,+!p1@FOXB1!0.74!4.47!FOXB1;;chr5:50679228..50679288,+!p1@ISL1!0.74!4.47!ISL1;;chr6:106547079..106547114,+!p9@PRDM1!0.74!4.47!PRDM1;;chr1:25256439..25256476,-!p3@RUNX3!0.74!4.47!RUNX3;;chr20:51589133..51589159,+!p2@TSHZ2!0.74!4.47!TSHZ2;;chr19:18392422..18392440,-!p1@JUND!0.73!686.14!JUND;;chr19:926001..926046,+!p1@ARID3A!0.73!16.56!ARID3A;;chr2:145274981..145274994,-!p9@ZEB2!0.72!6.57!ZEB2;;chr3:141747950..141748004,-!p7@TFDP2!0.72!4.21!TFDP2;;chr15:90294062..90294079,-!p2@MESP1!0.72!4.21!MESP1;;chr9:117150254..117150271,-!p1@AKNA!0.71!12.36!AKNA;;chr6:21597283..21597312,+!p7@SOX4!0.71!5.78!SOX4;;chr5:88179195..88179224,-!p3@MEF2C!0.70!6.84!MEF2C;;chr17:42295897..42295953,-!p10@UBTF!0.70!5.52!UBTF;;chr11:47236584..47236679,+!p1@DDB2!0.69!48.90!DDB2;;chr11:128392309..128392350,-!p3@ETS1!0.69!10.25!ETS1;;chr2:192015750..192015793,-!p2@STAT4!0.69!5.52!STAT4;;chr5:137804357..137804390,+!p4@EGR1!0.69!4.73!EGR1;;chr18:55102806..55102847,+!p3@ONECUT2!0.69!3.94!ONECUT2;;chr2:176972047..176972063,+!p7@HOXD11!0.69!3.94!HOXD11;;chr4:57522476..57522500,-!p7@HOPX!0.69!3.94!HOPX;;chr2:208394817..208394834,+!p3@CREB1!0.68!17.09!CREB1;;chr1:27023752..27023799,+!p4@ARID1A!0.68!5.26!ARID1A;;chr17:42295777..42295816,-!p7@UBTF!0.68!4.73!UBTF;;chr10:104154246..104154347,+!p3@NFKB2!0.67!25.76!NFKB2;;chr17:38465441..38465481,+!p6@RARA!0.67!4.73!RARA;;chr15:76629097..76629120,+!p2@ISL2!0.67!4.21!ISL2;;chr6:106546871..106546878,+!p17@PRDM1!0.67!3.68!PRDM1;;chr19:47538560..47538591,+!p2@NPAS1!0.67!3.68!NPAS1;;chr1:25291461..25291472,-!p11@RUNX3!0.67!3.68!RUNX3;;chr20:30795511..30795562,-!p1@PLAGL2!0.66!75.71!PLAGL2;;chr16:31885093..31885165,+!p1@ZNF267!0.66!63.36!ZNF267;;chr6:31126291..31126399,+!p1@TCF19!0.66!39.70!TCF19;;chr19:18392250..18392260,-!p4@JUND!0.66!12.88!JUND;;chr1:8763463..8763499,-!p6@RERE!0.66!11.04!RERE;;chr20:44600199..44600219,-!p3@ZNF335!0.66!4.99!ZNF335;;chr7:148581360..148581425,-!p1@EZH2!0.65!19.45!EZH2;;chr9:130954041..130954121,-!p2@CIZ1!0.65!17.35!CIZ1;;chr16:1031762..1031781,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@@ Line 41: / Line 43: @@
 |fonse_treatment_closure=
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 |name=hairy cell leukemia cell line:Mo
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@@ Line 51: / Line 62: @@
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@@ Line 67: / Line 79: @@
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 |sample_category=cell lines
@@ Line 90: / Line 103: @@
 |top_motifs=POU2F1..3:2.65206052336;HOXA9_MEIS1:2.61205330154;PAX4:1.75338308297;NKX6-1,2:1.65836594222;NFKB1_REL_RELA:1.29626498094;AIRE:1.27081918024;ZIC1..3:1.25816448896;IKZF2:1.249827832;FOXP3:1.18984529598;HOX{A6,A7,B6,B7}:1.17644032542;EVI1:1.16754397479;POU3F1..4:1.13115432971;E2F1..5:1.12045278584;YY1:1.0796074849;GCM1,2:1.07361524451;CREB1:1.07044517186;CDX1,2,4:1.05129399052;ZBTB16:1.00552069883;NKX2-1,4:1.00078792386;ELF1,2,4:1.00076761311;NFY{A,B,C}:0.889448638454;RUNX1..3:0.857048902736;CDC5L:0.855102696622;MYOD1:0.809435211327;ATF4:0.799023108703;PBX1:0.760015964669;ATF5_CREB3:0.741470627532;MYB:0.734229964183;ESR1:0.71764743313;FOXP1:0.667846616362;TOPORS:0.633080922464;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.605342653972;SOX{8,9,10}:0.596433177569;GATA6:0.584907939109;HES1:0.584677532626;SPI1:0.578917056681;ELK1,4_GABP{A,B1}:0.562313727061;ONECUT1,2:0.55845962142;NKX3-1:0.546428405393;CRX:0.529454793563;POU1F1:0.523045866677;PAX6:0.518028405229;STAT5{A,B}:0.509508603701;PAX3,7:0.500012120996;HSF1,2:0.487536071033;NKX2-2,8:0.482041685493;BREu{core}:0.467351220657;PITX1..3:0.443103829293;FOX{F1,F2,J1}:0.429883802475;NRF1:0.411846847985;ARID5B:0.401138199595;CUX2:0.397238556968;PAX8:0.392682553477;ZNF148:0.367564800178;ZNF143:0.357861631004;JUN:0.320396810556;VSX1,2:0.307276511142;SOX17:0.28157070334;DMAP1_NCOR{1,2}_SMARC:0.250545792867;PAX2:0.248814492652;TGIF1:0.240087024992;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.221327589805;TEF:0.211051880256;FOXM1:0.190779452832;GFI1:0.158076848339;PRRX1,2:0.157657086794;GLI1..3:0.126323583669;RORA:0.117857880153;FOXN1:0.116221093481;AHR_ARNT_ARNT2:0.0963720464335;GATA4:0.0955863780077;TFDP1:0.0536882881432;HBP1_HMGB_SSRP1_UBTF:0.0332729218859;RFX2..5_RFXANK_RFXAP:0.000974028204434;IRF1,2:0.000703241131487;TP53:9.97770257685e-05;ALX1:-0.0122968520953;TLX2:-0.0191535134042;SPIB:-0.0202913950911;FOSL2:-0.0246316466838;LEF1_TCF7_TCF7L1,2:-0.0263804306421;UFEwm:-0.0534420052453;HNF4A_NR2F1,2:-0.0674380739668;NANOG:-0.0693458344909;NR1H4:-0.0710506393799;ETS1,2:-0.0731974637823;POU5F1:-0.0993718057781;NR5A1,2:-0.128521199819;GFI1B:-0.148810567444;RXRA_VDR{dimer}:-0.196500133869;NKX2-3_NKX2-5:-0.221210971567;SNAI1..3:-0.238436130344;OCT4_SOX2{dimer}:-0.241604744925;HNF1A:-0.264327131235;ZEB1:-0.2669977742;RREB1:-0.280754319512;NFE2:-0.281893903788;ZNF423:-0.294450659655;PAX1,9:-0.306440915515;bHLH_family:-0.310288794344;FOS_FOS{B,L1}_JUN{B,D}:-0.313064557837;ESRRA:-0.313543194756;NANOG{mouse}:-0.339023124541;HOX{A4,D4}:-0.352587991931;LMO2:-0.356469653398;ZFP161:-0.379859632661;HMGA1,2:-0.381211837509;LHX3,4:-0.397737276923;SRF:-0.414860920087;POU6F1:-0.414976217472;HIF1A:-0.458015930384;BACH2:-0.463187218717;TBP:-0.478743859818;MEF2{A,B,C,D}:-0.488985889801;NFE2L1:-0.492037377968;ADNP_IRX_SIX_ZHX:-0.502722715393;NKX3-2:-0.504263712754;DBP:-0.509577569613;FOXL1:-0.533262366213;HLF:-0.53356505463;HOX{A5,B5}:-0.537589478891;FOXD3:-0.55382783873;CEBPA,B_DDIT3:-0.56302233848;MYFfamily:-0.573789654197;MTF1:-0.587118955276;ZNF384:-0.592241103357;PPARG:-0.598768991748;TFAP4:-0.616519689382;HAND1,2:-0.627876248921;SOX2:-0.652522299123;BPTF:-0.661485977884;PDX1:-0.664382056248;SOX5:-0.677275687565;EGR1..3:-0.681075293048;RFX1:-0.712748483759;NR6A1:-0.71439614516;NFIL3:-0.716644108744;XCPE1{core}:-0.71947896226;REST:-0.719716973284;AR:-0.71972830198;ATF6:-0.725792748667;SMAD1..7,9:-0.741836165414;KLF4:-0.750863031728;RBPJ:-0.75225940321;ATF2:-0.793391454672;NFE2L2:-0.799532595836;EP300:-0.811162886883;SREBF1,2:-0.854532412829;MTE{core}:-0.854926642077;FOX{I1,J2}:-0.872201131087;NHLH1,2:-0.879993483745;GTF2A1,2:-0.904107000805;TAL1_TCF{3,4,12}:-0.9062210193;STAT2,4,6:-0.914483188827;HMX1:-0.943228435187;ALX4:-0.946226083342;STAT1,3:-0.962633683615;MYBL2:-0.968827140062;GZF1:-0.986110121672;IRF7:-0.998015007607;T:-1.07087734228;SP1:-1.08606246284;IKZF1:-1.10081771011;XBP1:-1.12586698472;PATZ1:-1.1308208845;EN1,2:-1.13240388209;HIC1:-1.13707650927;NFATC1..3:-1.14237099323;NR3C1:-1.15594817921;FOX{D1,D2}:-1.16612033273;PRDM1:-1.20971883814;FOXQ1:-1.25136788102;EBF1:-1.27644295354;TFCP2:-1.32378582178;MED-1{core}:-1.3243181653;MAFB:-1.33554879636;ZBTB6:-1.3399663007;MZF1:-1.34705600987;RXR{A,B,G}:-1.36327836382;SPZ1:-1.38252631095;FOXO1,3,4:-1.38874919455;TFAP2B:-1.39357395785;TFAP2{A,C}:-1.42365568178;TEAD1:-1.44892655313;NFIX:-1.51853068964;TBX4,5:-1.55781569482;ZNF238:-1.58314760322;TLX1..3_NFIC{dimer}:-1.64289551433;MAZ:-1.71717683067;GTF2I:-1.72368992721;PAX5:-1.75272111494;FOXA2:-1.82057864531
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10712-109I1;search_select_hide=table117:FF:10712-109I1
 }}

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FF:10712-109I1: Difference between revisions

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Latest revision as of 15:01, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0