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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007843
|DRA_sample_Accession=CAGE@SAMD00005137
|accession_numbers=CAGE;DRX007949;DRR008821;DRZ000246;DRZ001631
|accession_numbers=CAGE;DRX007949;DRR008821;DRZ000246;DRZ001631;DRZ011596;DRZ012981
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000057,CL:0000077
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000057,CL:0000077
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr17:36105042..36105060,-!p1@HNF1B!2.12!130.43!HNF1B;;chr1:201979743..201979762,+!p1@ELF3!2.00!99.42!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.88!74.05!ELF3;;chr3:69915385..69915438,+!p3@MITF!1.84!67.65!MITF;;chr2:114036488..114036504,-!p1@PAX8!1.79!61.24!PAX8;;chr3:69915369..69915381,+!p4@MITF!1.68!47.40!MITF;;chr3:69812798..69812824,+!p8@MITF!1.60!38.44!MITF;;chr3:69812745..69812760,+!p10@MITF!1.45!27.16!MITF;;chr3:69812701..69812729,+!p9@MITF!1.40!24.34!MITF;;chr7:28448965..28448994,+!p2@CREB5!1.38!78.67!CREB5;;chr11:61520075..61520136,+!p1@C11orf9!1.38!47.66!C11orf9;;chr6:19837592..19837621,+!p1@ID4!1.36!129.15!ID4;;chr3:69812731..69812742,+!p19@MITF!1.32!19.73!MITF;;chr6:10412600..10412637,-!p1@TFAP2A!1.27!28.96!TFAP2A;;chr9:126774018..126774055,+!p1@LHX2!1.23!15.89!LHX2;;chr3:141043020..141043049,+!p17@ZBTB38!1.19!14.61!ZBTB38;;chr18:55102598..55102623,+!p1@ONECUT2!1.19!14.35!ONECUT2;;chr10:102505493..102505546,+!p2@PAX2!1.17!13.84!PAX2;;chr5:124082322..124082364,-!p1@ZNF608!1.12!31.01!ZNF608;;chr7:28452130..28452154,+!p10@CREB5!1.12!12.04!CREB5;;chr4:87928142..87928165,+!p5@AFF1!1.09!38.69!AFF1;;chr3:69812649..69812658,+!p20@MITF!1.09!11.27!MITF;;chr3:69812764..69812775,+!p18@MITF!1.07!10.76!MITF;;chr4:87928166..87928186,+!p12@AFF1!1.06!16.40!AFF1;;chr8:76319876..76319926,+!p1@HNF4G!1.02!9.48!HNF4G;;chr12:100867653..100867677,+!p2@NR1H4!1.02!9.48!NR1H4;;chr3:69812852..69812864,+!p17@MITF!1.00!8.97!MITF;;chr9:4300050..4300118,-!p1@GLIS3!0.99!57.91!GLIS3;;chr6:10415276..10415341,-!p2@TFAP2A!0.99!10.76!TFAP2A;;chr3:69811858..69811881,+!p5@MITF!0.99!8.71!MITF;;chr18:55102628..55102646,+!p2@ONECUT2!0.99!8.71!ONECUT2;;chr3:141043050..141043063,+!p22@ZBTB38!0.98!8.46!ZBTB38;;chr17:79881332..79881348,-!p3@MAFG!0.97!12.30!MAFG;;chr5:176738887..176738934,-!p1@MXD3!0.96!55.60!MXD3;;chr3:170076314..170076334,+!p2@SKIL!0.96!10.76!SKIL;;chr16:51185172..51185197,-!p1@SALL1!0.96!8.20!SALL1;;chrY:21906594..21906622,-!p1@KDM5D!0.95!7.94!KDM5D;;chr5:124081979..124082021,-!p7@ZNF608!0.94!7.69!ZNF608;;chr5:174151553..174151610,+!p1@MSX2!0.92!12.56!MSX2;;chr17:46703687..46703740,-!p1@HOXB9!0.91!7.17!HOXB9;;chr13:41593425..41593480,-!p1@ELF1!0.88!43.82!ELF1;;chr11:706938..707008,-!p3@DEAF1!0.88!8.46!DEAF1;;chr12:100867627..100867652,+!p1@NR1H4!0.88!6.66!NR1H4;;chr7:156803329..156803362,-!p1@MNX1!0.88!6.66!MNX1;;chr10:51572408..51572454,+!p3@NCOA4!0.87!39.20!NCOA4;;chr5:124082279..124082319,-!p3@ZNF608!0.87!7.94!ZNF608;;chr6:10412392..10412409,-!p4@TFAP2A!0.86!7.17!TFAP2A;;chr20:30193083..30193098,+!p1@ID1!0.85!521.71!ID1;;chr15:67357924..67357952,+!p2@SMAD3!0.85!43.05!SMAD3;;chr3:69812877..69812886,+!p22@MITF!0.85!6.15!MITF;;chr4:87928105..87928126,+!p13@AFF1!0.84!9.22!AFF1;;chr11:120107344..120107351,+!p1@POU2F3!0.83!7.17!POU2F3;;chr6:21593973..21593988,+!p1@SOX4!0.82!218.32!SOX4;;chr2:242556880..242556899,-!p5@THAP4!0.82!5.64!THAP4;;chr3:24536253..24536328,-!p1@THRB!0.81!10.76!THRB;;chr16:54320646..54320672,-!p2@IRX3!0.81!8.71!IRX3;;chr7:28725740..28725778,+!p1@CREB5!0.80!51.76!CREB5;;chr2:63277948..63277974,+!p1@OTX1!0.80!5.38!OTX1;;chr17:36104873..36104903,-!p3@HNF1B!0.80!5.38!HNF1B;;chr1:151804244..151804310,-!p1@RORC!0.80!5.38!RORC;;chr5:76383133..76383186,-!p2@ZBED3!0.79!11.27!ZBED3;;chr5:76383070..76383117,-!p3@ZBED3!0.79!11.02!ZBED3;;chr5:174151612..174151633,+!p2@MSX2!0.79!5.12!MSX2;;chr16:54320617..54320643,-!p3@IRX3!0.78!6.66!IRX3;;chr15:66994561..66994597,+!p2@SMAD6!0.77!12.56!SMAD6;;chr15:66994615..66994630,+!p3@SMAD6!0.77!7.17!SMAD6;;chr17:36105074..36105086,-!p2@HNF1B!0.77!4.87!HNF1B;;chr7:101917407..101917443,+!p3@CUX1!0.77!4.87!CUX1;;chr2:8822176..8822196,+!p1@ID2!0.75!716.20!ID2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.75!50.99!GLIS2;;chr5:124080203..124080258,-!p5@ZNF608!0.75!5.38!ZNF608;;chr20:22564895..22564910,-!p1@FOXA2!0.75!4.61!FOXA2;;chr2:176994408..176994492,+!p1@HOXD8!0.75!4.61!HOXD8;;chr7:128577972..128578047,+!p1@IRF5!0.73!7.17!IRF5;;chr5:172662197..172662216,-!p1@NKX2-5!0.73!4.36!NKX2-5;;chr19:58373157..58373159,+!p4@ZNF587!0.72!8.20!ZNF587;;chrX:129402866..129402880,-!p1@ZNF280C!0.71!26.65!ZNF280C;;chr1:41174988..41175047,+!p4@NFYC!0.71!12.04!NFYC;;chr11:63684602..63684664,-!p1@RCOR2!0.71!8.71!RCOR2;;chr6:21597514..21597578,+!p4@SOX4!0.71!7.43!SOX4;;chr3:12330560..12330579,+!p1@PPARG!0.71!4.87!PPARG;;chr5:124082470..124082483,-!p8@ZNF608!0.71!4.10!ZNF608;;chr6:21597765..21597779,+!p2@SOX4!0.70!36.90!SOX4;;chr3:69788576..69788648,+!p1@MITF!0.69!23.57!MITF;;chr2:122042770..122042785,-!p1@TFCP2L1!0.69!3.84!TFCP2L1;;chr17:48045917..48045977,+!p1@DLX4!0.69!3.84!DLX4;;chr12:80084279..80084293,-!p8@PAWR!0.68!6.66!PAWR;;chr3:101546827..101546847,+!p2@NFKBIZ!0.68!5.64!NFKBIZ;;chr4:87857474..87857489,+!p7@AFF1!0.67!6.92!AFF1;;chr12:80083544..80083558,-!p13@PAWR!0.67!4.87!PAWR;;chr16:1429627..1429662,-!p2@UNKL!0.66!11.79!UNKL;;chr7:28725715..28725727,+!p3@CREB5!0.66!4.36!CREB5;;chr13:41593493..41593506,-!p8@ELF1!0.66!3.59!ELF1;;chr3:69811882..69811898,+!p6@MITF!0.66!3.59!MITF;;chr12:80084167..80084197,-!p5@PAWR!0.65!8.97!PAWR;;chr9:4300016..4300039,-!p2@GLIS3!0.65!6.41!GLIS3;;chr19:23433144..23433204,-!p1@ZNF724P!0.64!17.68!ZNF724P;;chr16:29818199..29818216,+!p11@MAZ!0.64!5.89!MAZ;;chr1:203764633..203764674,+!p2@ZC3H11A!0.64!5.89!ZC3H11A;;chr9:130966497..130966541,-!p4@CIZ1!0.64!3.33!CIZ1;;chr2:16080659..16080685,+!p1@MYCN!0.64!3.33!MYCN;;chr12:19592405..19592492,+!p2@AEBP2!0.63!33.31!AEBP2;;chr9:99180617..99180658,-!p1@ZNF367!0.63!7.94!ZNF367;;chr2:178128199..178128245,-!p3@NFE2L2!0.62!19.99!NFE2L2;;chr12:80084137..80084165,-!p10@PAWR!0.62!4.36!PAWR;;chr16:29818160..29818188,+!p6@MAZ!0.61!16.91!MAZ;;chr15:66994663..66994680,+!p1@SMAD6!0.61!8.20!SMAD6;;chr4:87968291..87968314,+!p14@AFF1!0.61!4.36!AFF1;;chr2:5832508..5832524,+!p1@SOX11!0.61!3.07!SOX11;;chr2:73144617..73144654,+!p1@EMX1!0.61!3.07!EMX1;;chr3:24536231..24536249,-!p4@THRB!0.61!3.07!THRB;;chr3:69811826..69811835,+!p16@MITF!0.61!3.07!MITF;;chr11:31832658..31832681,-!p1@PAX6!0.61!3.07!PAX6;;chr16:54319010..54319041,-!p8@IRX3!0.61!3.07!IRX3;;chr7:27153454..27153469,-!p2@HOXA3!0.61!3.07!HOXA3;;chr12:80084737..80084763,-!p3@PAWR!0.60!13.07!PAWR;;chr5:150284532..150284549,-!p1@ZNF300!0.60!6.92!ZNF300;;chr6:21597600..21597664,+!p3@SOX4!0.60!5.38!SOX4;;chr9:4299979..4299996,-!p3@GLIS3!0.60!5.38!GLIS3;;chr2:169312600..169312606,+!p2@CERS6!0.60!5.12!CERS6;;chr16:54964740..54964789,+!p1@IRX5!0.60!4.61!IRX5;;chr17:46688334..46688385,-!p1@HOXB7!0.60!4.61!HOXB7;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.59!15.89!TAL1;;chr7:28448995..28449011,+!p4@CREB5!0.59!4.36!CREB5;;chr15:80696703..80696754,+!p1@ARNT2!0.59!4.10!ARNT2;;chr19:21264991..21265026,+!p1@ZNF714!0.58!22.55!ZNF714;;chr8:77593474..77593612,+!p1@ZFHX4!0.58!14.09!ZFHX4;;chr12:51566562..51566584,-!p2@TFCP2!0.58!9.22!TFCP2;;chr2:172967621..172967637,-!p1@DLX2!0.58!8.71!DLX2;;chr16:51185318..51185348,-!p2@SALL1!0.58!2.82!SALL1;;chr17:46132044..46132080,+!p4@NFE2L1!0.58!2.82!NFE2L1;;chrY:2803415..2803468,+!p1@ZFY!0.58!2.82!ZFY;;chr14:38064429..38064486,-!p1@FOXA1!0.58!2.82!FOXA1;;chr5:124082428..124082439,-!p16@ZNF608!0.58!2.82!ZNF608;;chr8:11561684..11561751,+!p1@GATA4!0.58!2.82!GATA4;;chr19:22034809..22034878,-!p2@ZNF43!0.57!11.27!ZNF43;;chr6:21597370..21597408,+!p5@SOX4!0.57!4.87!SOX4;;chr4:87968203..87968221,+!p11@AFF1!0.57!4.87!AFF1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.56!174.76!NFKBIZ;;chr8:28243813..28243839,-!p4@ZNF395!0.56!5.38!ZNF395;;chr9:77112244..77112262,+!p1@RORB!0.56!3.07!RORB;;chr3:114343826..114343869,-!p4@ZBTB20!0.55!5.89!ZBTB20;;chr5:134369905..134369972,-!p1@PITX1!0.55!4.36!PITX1;;chr5:172662230..172662241,-!p3@NKX2-5!0.55!2.56!NKX2-5;;chr17:46703528..46703549,-!p5@HOXB9!0.55!2.56!HOXB9;;chr17:79881433..79881452,-!p6@MAFG!0.55!2.56!MAFG;;chr2:191906489..191906517,-!p6@STAT4!0.55!2.56!STAT4;;chr3:138665937..138665968,-!p1@FOXL2!0.55!2.56!FOXL2;;chr10:102505954..102505973,+!p3@PAX2!0.55!2.56!PAX2;;chr12:100897130..100897149,+!p3@NR1H4!0.55!2.56!NR1H4;;chr13:100623375..100623425,-!p1@ZIC5!0.55!2.56!ZIC5;;chr17:7590797..7590815,-!p1@TP53!0.54!138.37!TP53;;chr19:9695195..9695221,-!p2@ZNF121!0.54!36.13!ZNF121;;chr9:109625401..109625458,+!p1@ZNF462!0.54!7.69!ZNF462;;chr18:56532100..56532130,+!p1@ZNF532!0.54!5.12!ZNF532;;chr17:41277372..41277418,-!p1@BRCA1!0.53!10.76!BRCA1;;chr2:148778973..148779035,+!p3@MBD5!0.53!7.43!MBD5;;chr4:87967906..87967931,+!p15@AFF1!0.53!3.59!AFF1;;chr5:124082580..124082603,-!p4@ZNF608!0.53!2.82!ZNF608;;chr20:42295745..42295765,+!p1@MYBL2!0.52!49.45!MYBL2;;chr2:242576431..242576458,-!p3@THAP4!0.52!6.66!THAP4;;chr16:54320675..54320715,-!p1@IRX3!0.52!5.89!IRX3;;chr13:37494365..37494381,-!p1@SMAD9!0.52!4.61!SMAD9;;chr16:54320101..54320125,-!p4@IRX3!0.52!3.59!IRX3;;chr12:80083807..80083859,-!p11@PAWR!0.52!3.07!PAWR;;chr6:10412576..10412599,-!p5@TFAP2A!0.52!2.31!TFAP2A;;chr15:66994885..66994904,+!p7@SMAD6!0.52!2.31!SMAD6;;chr19:22034784..22034801,-!p4@ZNF43!0.52!2.31!ZNF43;;chr2:242556900..242556916,-!p6@THAP4!0.52!2.31!THAP4;;chr3:24536332..24536358,-!p2@THRB!0.52!2.31!THRB;;chr14:74226961..74227020,-!p1@C14orf43!0.51!18.71!C14orf43;;chr19:58361185..58361235,+!p2@ZNF587!0.51!15.37!ZNF587;;chr19:11849700..11849803,-!p1@ZNF823!0.51!13.84!ZNF823;;chr4:87857433..87857472,+!p9@AFF1!0.51!4.61!AFF1;;chr2:191878812..191878823,-!p2@STAT1!0.51!3.07!STAT1;;chr9:137217986..137218049,+!p3@RXRA!0.50!7.69!RXRA;;chr19:22018938..22018963,-!p3@ZNF43!0.50!6.15!ZNF43;;chr13:72441315..72441454,-!p1@DACH1!0.50!5.12!DACH1;;chr5:72744445..72744466,-!p2@FOXD1!0.50!4.10!FOXD1;;chr9:4299959..4299974,-!p4@GLIS3!0.50!3.84!GLIS3;;chr8:67525443..67525459,-!p2@MYBL1!0.50!3.59!MYBL1;;chr18:46475696..46475713,-!p1@SMAD7!0.50!2.56!SMAD7;;chr5:138609782..138609826,+!p5@MATR3!0.49!17.68!MATR3;;chr12:80084303..80084332,-!p1@PAWR!0.49!16.14!PAWR;;chr19:37096139..37096170,-!p2@ZNF529!0.49!7.17!ZNF529;;chr12:125002827..125002855,-!p5@NCOR2!0.49!3.33!NCOR2;;chr3:32023232..32023273,+!p1@ZNF860!0.49!3.33!ZNF860;;chr14:74226833..74226845,-!p7@C14orf43!0.49!3.0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Line 41: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H28.CNhs13061.10845-111E8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H28.CNhs13061.10845-111E8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H28.CNhs13061.10845-111E8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H28.CNhs13061.10845-111E8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H28.CNhs13061.10845-111E8.hg38.nobarcode.ctss.bed.gz
|id=FF:10845-111E8
|id=FF:10845-111E8
|is_a=EFO:0002091;;FF:0000210;;FF:0102424;;FF:0103764
|is_a=EFO:0002091;;FF:0000210;;FF:0102424;;FF:0103764
|is_obsolete=
|is_obsolete=
|library_id=CNhs13061
|library_id=CNhs13061
|library_id_phase_based=1:CNhs13061
|library_id_phase_based=2:CNhs13061
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10845
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10845
|name=mesothelioma cell line:NCI-H28
|name=mesothelioma cell line:NCI-H28
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs13061,LSID1000,release012,COMPLETED
|profile_hcage=CNhs13061,LSID1000,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 65: Line 75:
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|sample_age=48
Line 90: Line 100:
|top_motifs=ALX1:2.5683885444;HNF1A:2.32232672315;ESRRA:1.68006445815;ONECUT1,2:1.66037127975;ELK1,4_GABP{A,B1}:1.57537485811;FOXQ1:1.47497941771;ZBTB16:1.38749254881;MYOD1:1.30528672375;RXRA_VDR{dimer}:1.26001703362;LHX3,4:1.25394598609;NKX6-1,2:1.22903264296;EVI1:1.1536838603;E2F1..5:1.13038684942;NR5A1,2:0.998439836535;NFE2L2:0.997287364723;NR6A1:0.958202794661;PITX1..3:0.945248168651;NKX2-1,4:0.906368232562;ADNP_IRX_SIX_ZHX:0.889826320321;NRF1:0.841333363694;PAX5:0.833725077318;CDX1,2,4:0.792704480747;MYB:0.78389355272;STAT5{A,B}:0.743023170298;ZNF143:0.729688748219;AIRE:0.718268148745;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.680921453714;NKX3-2:0.662277848875;HIF1A:0.657305486486;HNF4A_NR2F1,2:0.653807125228;RORA:0.648883261733;HOX{A6,A7,B6,B7}:0.620804718261;RXR{A,B,G}:0.578666104479;NFE2:0.55718000215;ALX4:0.542684789083;bHLH_family:0.537180906704;SOX2:0.532553184865;NFY{A,B,C}:0.517597637979;UFEwm:0.488791153508;HAND1,2:0.465614526739;PBX1:0.420330773784;YY1:0.397603892098;TEF:0.382617305454;DBP:0.354128618236;TBX4,5:0.335970208093;PAX4:0.329131712244;XCPE1{core}:0.324521864361;LEF1_TCF7_TCF7L1,2:0.287595042011;ARID5B:0.262116498941;SNAI1..3:0.250892070302;IKZF2:0.243800866926;TOPORS:0.238387281669;NANOG:0.233817973471;NR1H4:0.231111734551;FOXP3:0.219727678856;NFE2L1:0.209168303784;NKX3-1:0.208375144107;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.203955679362;POU1F1:0.182366624451;CUX2:0.178421822756;ZFP161:0.166523156643;ZEB1:0.165455619665;EN1,2:0.153660368402;GFI1:0.144836810935;NKX2-2,8:0.144345524748;IKZF1:0.130485232729;TEAD1:0.112593268814;TP53:0.100593819031;HOXA9_MEIS1:0.0880034285576;BREu{core}:0.0846039801342;NFIX:0.0802029434746;FOXM1:0.0735333360002;HOX{A4,D4}:0.071470533572;OCT4_SOX2{dimer}:0.0662170379136;FOSL2:0.0585591785826;FOX{F1,F2,J1}:0.0580817267211;ZIC1..3:0.0512844937144;FOXP1:0.0400905403546;SOX17:0.033725375485;PDX1:0.031184211012;ELF1,2,4:0.0279869389276;HOX{A5,B5}:0.0180099466879;FOXN1:-0.0191131359374;LMO2:-0.0290831904315;POU6F1:-0.0387724902963;XBP1:-0.0417612024862;FOXD3:-0.0453675765518;PRRX1,2:-0.0481560318471;RFX1:-0.0996104464747;RBPJ:-0.109619076108;TFDP1:-0.110530364515;MTE{core}:-0.132515407661;CDC5L:-0.133990939783;NFKB1_REL_RELA:-0.151308586552;STAT1,3:-0.157552251594;EP300:-0.160121642593;FOXA2:-0.162415113723;PAX8:-0.173302372507;CREB1:-0.176388950045;POU5F1:-0.176666785583;TFAP2{A,C}:-0.178929067918;MZF1:-0.184612796857;AHR_ARNT_ARNT2:-0.186154860561;POU3F1..4:-0.186341153475;BACH2:-0.189121224545;GFI1B:-0.209431615665;KLF4:-0.209843533857;ATF2:-0.210001156014;PAX6:-0.242403637323;ZNF423:-0.242995591352;TFCP2:-0.250264049736;AR:-0.250369368386;PAX1,9:-0.253526587362;RFX2..5_RFXANK_RFXAP:-0.258195984953;EGR1..3:-0.278496993077;ESR1:-0.287041883498;FOS_FOS{B,L1}_JUN{B,D}:-0.297145815591;RREB1:-0.300807844968;PPARG:-0.316628913627;ZNF384:-0.323976834025;MAZ:-0.324610920471;GTF2I:-0.337381524797;PAX2:-0.363843682727;CEBPA,B_DDIT3:-0.366156554932;PATZ1:-0.375082746188;TLX1..3_NFIC{dimer}:-0.380059822661;CRX:-0.385478289142;BPTF:-0.410963046112;TFAP2B:-0.462118306514;NKX2-3_NKX2-5:-0.469221617788;MEF2{A,B,C,D}:-0.479056857648;T:-0.481303139004;SP1:-0.482929027078;GATA6:-0.485752655727;FOXL1:-0.487589478325;STAT2,4,6:-0.495311940592;GATA4:-0.516749221637;SPIB:-0.526815480325;HIC1:-0.532891409877;SPI1:-0.549529169515;IRF7:-0.554088150455;SOX{8,9,10}:-0.561408002798;ATF5_CREB3:-0.593693916809;POU2F1..3:-0.602270436108;RUNX1..3:-0.604256382225;EBF1:-0.606263600848;ZNF148:-0.620349118584;MYBL2:-0.621511895029;NR3C1:-0.621965283856;ATF4:-0.641479145316;PRDM1:-0.663116262787;TAL1_TCF{3,4,12}:-0.665633921555;FOX{I1,J2}:-0.698444727833;SPZ1:-0.702447421241;HLF:-0.716678255445;DMAP1_NCOR{1,2}_SMARC:-0.766063080953;NFIL3:-0.773727312125;ETS1,2:-0.780149522063;GZF1:-0.817892133885;SREBF1,2:-0.833821740156;MED-1{core}:-0.839392931089;REST:-0.861029710127;FOX{D1,D2}:-0.870145712054;SOX5:-0.87070012268;TGIF1:-0.915541945245;GLI1..3:-0.926112372127;HES1:-0.927441711894;PAX3,7:-0.960173603718;NFATC1..3:-0.961665436875;IRF1,2:-0.96801019083;GTF2A1,2:-0.99826398999;ZBTB6:-1.00457121923;MYFfamily:-1.02325526903;MTF1:-1.0403458207;HSF1,2:-1.04142215325;VSX1,2:-1.04212600219;JUN:-1.05284394591;HMGA1,2:-1.06563147036;FOXO1,3,4:-1.08204613885;NANOG{mouse}:-1.0860502152;GCM1,2:-1.23614337574;TBP:-1.243282624;NHLH1,2:-1.29429294329;SRF:-1.32496774583;MAFB:-1.35050533598;HMX1:-1.37025462819;ZNF238:-1.41879801171;TLX2:-1.42504390787;HBP1_HMGB_SSRP1_UBTF:-1.53330505642;SMAD1..7,9:-1.53523469897;ATF6:-1.65623338812;TFAP4:-1.67213728144
|top_motifs=ALX1:2.5683885444;HNF1A:2.32232672315;ESRRA:1.68006445815;ONECUT1,2:1.66037127975;ELK1,4_GABP{A,B1}:1.57537485811;FOXQ1:1.47497941771;ZBTB16:1.38749254881;MYOD1:1.30528672375;RXRA_VDR{dimer}:1.26001703362;LHX3,4:1.25394598609;NKX6-1,2:1.22903264296;EVI1:1.1536838603;E2F1..5:1.13038684942;NR5A1,2:0.998439836535;NFE2L2:0.997287364723;NR6A1:0.958202794661;PITX1..3:0.945248168651;NKX2-1,4:0.906368232562;ADNP_IRX_SIX_ZHX:0.889826320321;NRF1:0.841333363694;PAX5:0.833725077318;CDX1,2,4:0.792704480747;MYB:0.78389355272;STAT5{A,B}:0.743023170298;ZNF143:0.729688748219;AIRE:0.718268148745;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.680921453714;NKX3-2:0.662277848875;HIF1A:0.657305486486;HNF4A_NR2F1,2:0.653807125228;RORA:0.648883261733;HOX{A6,A7,B6,B7}:0.620804718261;RXR{A,B,G}:0.578666104479;NFE2:0.55718000215;ALX4:0.542684789083;bHLH_family:0.537180906704;SOX2:0.532553184865;NFY{A,B,C}:0.517597637979;UFEwm:0.488791153508;HAND1,2:0.465614526739;PBX1:0.420330773784;YY1:0.397603892098;TEF:0.382617305454;DBP:0.354128618236;TBX4,5:0.335970208093;PAX4:0.329131712244;XCPE1{core}:0.324521864361;LEF1_TCF7_TCF7L1,2:0.287595042011;ARID5B:0.262116498941;SNAI1..3:0.250892070302;IKZF2:0.243800866926;TOPORS:0.238387281669;NANOG:0.233817973471;NR1H4:0.231111734551;FOXP3:0.219727678856;NFE2L1:0.209168303784;NKX3-1:0.208375144107;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.203955679362;POU1F1:0.182366624451;CUX2:0.178421822756;ZFP161:0.166523156643;ZEB1:0.165455619665;EN1,2:0.153660368402;GFI1:0.144836810935;NKX2-2,8:0.144345524748;IKZF1:0.130485232729;TEAD1:0.112593268814;TP53:0.100593819031;HOXA9_MEIS1:0.0880034285576;BREu{core}:0.0846039801342;NFIX:0.0802029434746;FOXM1:0.0735333360002;HOX{A4,D4}:0.071470533572;OCT4_SOX2{dimer}:0.0662170379136;FOSL2:0.0585591785826;FOX{F1,F2,J1}:0.0580817267211;ZIC1..3:0.0512844937144;FOXP1:0.0400905403546;SOX17:0.033725375485;PDX1:0.031184211012;ELF1,2,4:0.0279869389276;HOX{A5,B5}:0.0180099466879;FOXN1:-0.0191131359374;LMO2:-0.0290831904315;POU6F1:-0.0387724902963;XBP1:-0.0417612024862;FOXD3:-0.0453675765518;PRRX1,2:-0.0481560318471;RFX1:-0.0996104464747;RBPJ:-0.109619076108;TFDP1:-0.110530364515;MTE{core}:-0.132515407661;CDC5L:-0.133990939783;NFKB1_REL_RELA:-0.151308586552;STAT1,3:-0.157552251594;EP300:-0.160121642593;FOXA2:-0.162415113723;PAX8:-0.173302372507;CREB1:-0.176388950045;POU5F1:-0.176666785583;TFAP2{A,C}:-0.178929067918;MZF1:-0.184612796857;AHR_ARNT_ARNT2:-0.186154860561;POU3F1..4:-0.186341153475;BACH2:-0.189121224545;GFI1B:-0.209431615665;KLF4:-0.209843533857;ATF2:-0.210001156014;PAX6:-0.242403637323;ZNF423:-0.242995591352;TFCP2:-0.250264049736;AR:-0.250369368386;PAX1,9:-0.253526587362;RFX2..5_RFXANK_RFXAP:-0.258195984953;EGR1..3:-0.278496993077;ESR1:-0.287041883498;FOS_FOS{B,L1}_JUN{B,D}:-0.297145815591;RREB1:-0.300807844968;PPARG:-0.316628913627;ZNF384:-0.323976834025;MAZ:-0.324610920471;GTF2I:-0.337381524797;PAX2:-0.363843682727;CEBPA,B_DDIT3:-0.366156554932;PATZ1:-0.375082746188;TLX1..3_NFIC{dimer}:-0.380059822661;CRX:-0.385478289142;BPTF:-0.410963046112;TFAP2B:-0.462118306514;NKX2-3_NKX2-5:-0.469221617788;MEF2{A,B,C,D}:-0.479056857648;T:-0.481303139004;SP1:-0.482929027078;GATA6:-0.485752655727;FOXL1:-0.487589478325;STAT2,4,6:-0.495311940592;GATA4:-0.516749221637;SPIB:-0.526815480325;HIC1:-0.532891409877;SPI1:-0.549529169515;IRF7:-0.554088150455;SOX{8,9,10}:-0.561408002798;ATF5_CREB3:-0.593693916809;POU2F1..3:-0.602270436108;RUNX1..3:-0.604256382225;EBF1:-0.606263600848;ZNF148:-0.620349118584;MYBL2:-0.621511895029;NR3C1:-0.621965283856;ATF4:-0.641479145316;PRDM1:-0.663116262787;TAL1_TCF{3,4,12}:-0.665633921555;FOX{I1,J2}:-0.698444727833;SPZ1:-0.702447421241;HLF:-0.716678255445;DMAP1_NCOR{1,2}_SMARC:-0.766063080953;NFIL3:-0.773727312125;ETS1,2:-0.780149522063;GZF1:-0.817892133885;SREBF1,2:-0.833821740156;MED-1{core}:-0.839392931089;REST:-0.861029710127;FOX{D1,D2}:-0.870145712054;SOX5:-0.87070012268;TGIF1:-0.915541945245;GLI1..3:-0.926112372127;HES1:-0.927441711894;PAX3,7:-0.960173603718;NFATC1..3:-0.961665436875;IRF1,2:-0.96801019083;GTF2A1,2:-0.99826398999;ZBTB6:-1.00457121923;MYFfamily:-1.02325526903;MTF1:-1.0403458207;HSF1,2:-1.04142215325;VSX1,2:-1.04212600219;JUN:-1.05284394591;HMGA1,2:-1.06563147036;FOXO1,3,4:-1.08204613885;NANOG{mouse}:-1.0860502152;GCM1,2:-1.23614337574;TBP:-1.243282624;NHLH1,2:-1.29429294329;SRF:-1.32496774583;MAFB:-1.35050533598;HMX1:-1.37025462819;ZNF238:-1.41879801171;TLX2:-1.42504390787;HBP1_HMGB_SSRP1_UBTF:-1.53330505642;SMAD1..7,9:-1.53523469897;ATF6:-1.65623338812;TFAP4:-1.67213728144
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10845-111E8;search_select_hide=table117:FF:10845-111E8
}}
}}

Latest revision as of 15:09, 3 June 2020

Name:mesothelioma cell line:NCI-H28
Species:Human (Homo sapiens)
Library ID:CNhs13061
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemesothelium
dev stageNA
sexmale
age48
cell typemesothelial cell
cell lineNCI-H28
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005137
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13061 CAGE DRX007949 DRR008821
Accession ID Hg19

Library idBAMCTSS
CNhs13061 DRZ000246 DRZ001631
Accession ID Hg38

Library idBAMCTSS
CNhs13061 DRZ011596 DRZ012981
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.363
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.443
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.18
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0567
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.382
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0406
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.13
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.128
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.00163
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal1.214
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.424
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.15
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13061

Jaspar motifP-value
MA0002.20.0222
MA0003.10.047
MA0004.10.832
MA0006.10.605
MA0007.10.564
MA0009.10.965
MA0014.10.659
MA0017.10.037
MA0018.24.21886e-4
MA0019.10.744
MA0024.12.64967e-5
MA0025.10.43
MA0027.10.245
MA0028.12.27953e-11
MA0029.10.563
MA0030.10.306
MA0031.10.121
MA0035.20.172
MA0038.10.817
MA0039.20.118
MA0040.10.918
MA0041.10.0647
MA0042.10.0137
MA0043.10.42
MA0046.13.95335e-36
MA0047.20.253
MA0048.10.0183
MA0050.13.00954e-6
MA0051.10.00564
MA0052.15.44262e-4
MA0055.12.30107e-4
MA0057.10.681
MA0058.10.518
MA0059.10.158
MA0060.10.054
MA0061.10.375
MA0062.21.59011e-11
MA0065.20.0147
MA0066.10.893
MA0067.10.0419
MA0068.18.4021e-4
MA0069.10.781
MA0070.10.0853
MA0071.10.0151
MA0072.10.776
MA0073.10.871
MA0074.10.7
MA0076.19.44856e-13
MA0077.10.989
MA0078.10.621
MA0079.20.435
MA0080.29.67819e-9
MA0081.10.232
MA0083.11.13901e-4
MA0084.10.0549
MA0087.10.589
MA0088.10.0383
MA0090.10.812
MA0091.10.0757
MA0092.10.172
MA0093.10.676
MA0099.20.0877
MA0100.10.256
MA0101.10.66
MA0102.20.254
MA0103.10.0119
MA0104.20.0829
MA0105.10.898
MA0106.10.418
MA0107.10.15
MA0108.28.66783e-14
MA0111.10.905
MA0112.20.549
MA0113.10.601
MA0114.12.65405e-4
MA0115.10.00721
MA0116.10.574
MA0117.10.397
MA0119.10.377
MA0122.10.457
MA0124.10.359
MA0125.10.893
MA0131.10.355
MA0135.10.773
MA0136.15.51278e-5
MA0137.20.0884
MA0138.20.179
MA0139.10.184
MA0140.10.45
MA0141.16.10029e-5
MA0142.10.41
MA0143.10.826
MA0144.10.0682
MA0145.10.252
MA0146.10.934
MA0147.10.0306
MA0148.10.267
MA0149.10.184
MA0150.10.103
MA0152.10.496
MA0153.12.55133e-26
MA0154.10.328
MA0155.10.0992
MA0156.10.217
MA0157.10.0203
MA0159.10.0578
MA0160.10.195
MA0162.10.6
MA0163.10.0763
MA0164.10.807
MA0258.10.26
MA0259.10.0601



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13061

Novel motifP-value
10.153
100.112
1000.076
1010.312
1020.286
1030.4
1040.651
1050.345
1060.026
1070.0537
1080.423
1090.255
110.826
1100.401
1110.306
1120.354
1130.0997
1140.522
1150.729
1160.505
1170.264
1180.0799
1190.905
120.65
1200.776
1210.824
1220.745
1230.278
1240.284
1250.726
1260.939
1270.205
1285.87253e-4
1290.331
131.03006e-4
1300.827
1310.777
1320.246
1330.032
1340.327
1350.369
1360.00678
1370.149
1380.344
1390.203
140.551
1400.155
1410.542
1420.674
1430.0442
1440.969
1450.346
1460.827
1470.848
1480.919
1490.692
150.629
1500.878
1510.588
1520.028
1530.511
1540.394
1550.78
1560.823
1570.619
1580.532
1590.845
160.914
1600.365
1610.91
1620.696
1630.815
1640.836
1650.732
1660.739
1670.2
1680.87
1690.79
170.278
180.401
190.383
20.0778
200.164
210.964
220.619
230.0628
240.159
250.77
260.309
270.614
280.542
290.189
30.845
300.199
310.595
320.0705
330.656
340.0856
350.648
360.463
370.916
380.858
390.39
40.918
400.612
410.0128
420.788
430.576
440.107
450.564
460.56
470.473
480.734
490.525
50.202
500.902
510.327
520.0779
530.242
540.722
550.805
560.878
570.359
580.657
590.725
60.851
600.159
610.194
620.465
630.927
640.847
650.312
660.443
670.865
680.635
690.254
70.755
700.784
710.169
720.54
730.235
740.31
750.237
760.75
770.466
780.0162
790.355
80.931
800.00414
810.438
820.275
830.197
840.229
850.257
860.655
870.217
880.523
890.645
90.0378
900.37
910.0857
920.0887
930.989
940.134
950.791
960.582
970.469
980.602
990.768



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13061


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0100460 (fibrosarcoma cell line sample)
0102424 (mesothelioma cell line sample)
0103764 (NCI cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)

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