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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005139
|DRA_sample_Accession=CAGE@SAMD00005139
|accession_numbers=CAGE;DRX008466;DRR009338;DRZ000763;DRZ002148
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005139
|accession_numbers=CAGE;DRX008466;DRR009338;DRZ000763;DRZ002148;DRZ012113;DRZ013498
|accession_numbers_RNASeq=sRNA-Seq;DRX037246;DRR041612;DRZ007254
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000065,UBERON:0001004
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000065,UBERON:0001004
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002368
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002368
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.26!180.87!EHF;;chr1:209979467..209979494,-!p1@IRF6!2.13!149.71!IRF6;;chr17:7493405..7493419,-!p1@SOX15!2.05!110.77!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.02!102.88!TP63;;chr1:6479968..6479986,-!p1@HES2!1.96!91.14!HES2;;chr17:7492684..7492778,-!p2@SOX15!1.74!111.88!SOX15;;chr15:83953397..83953425,-!p1@BNC1!1.73!60.39!BNC1;;chr12:54785074..54785122,-!p2@ZNF385A!1.68!70.30!ZNF385A;;chr6:10415276..10415341,-!p2@TFAP2A!1.59!45.93!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.59!37.83!IRX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.55!56.45!TFAP2A;;chr12:54785054..54785072,-!p4@ZNF385A!1.49!33.99!ZNF385A;;chr13:73633131..73633149,+!p1@KLF5!1.48!294.87!KLF5;;chr1:209979411..209979433,-!p2@IRF6!1.46!28.12!IRF6;;chr17:80797886..80797906,-!p1@ZNF750!1.39!23.77!ZNF750;;chr20:22564895..22564910,-!p1@FOXA2!1.37!22.56!FOXA2;;chr5:134369905..134369972,-!p1@PITX1!1.36!32.98!PITX1;;chr1:201979703..201979721,+!p2@ELF3!1.35!21.55!ELF3;;chr5:2751785..2751808,-!p2@IRX2!1.32!19.73!IRX2;;chr8:102504651..102504683,+!p1@GRHL2!1.28!18.01!GRHL2;;chr2:10091815..10091864,+!p1@GRHL1!1.26!22.96!GRHL1;;chr14:37131058..37131139,+!p1@PAX9!1.24!16.19!PAX9;;chr19:45908292..45908374,-!p1@PPP1R13L!1.23!139.19!PPP1R13L;;chr2:46524897..46524911,+!p2@EPAS1!1.23!44.00!EPAS1;;chr5:134369879..134369898,-!p2@PITX1!1.22!15.68!PITX1;;chr8:10588010..10588030,-!p1@SOX7!1.19!14.47!SOX7;;chr1:201979743..201979762,+!p1@ELF3!1.16!13.56!ELF3;;chr20:22565370..22565388,-!p2@FOXA2!1.16!13.35!FOXA2;;chr6:1312325..1312340,+!p1@FOXQ1!1.13!20.64!FOXQ1;;chr6:34524093..34524135,-!p1@SPDEF!1.13!12.54!SPDEF;;chr14:62162285..62162296,+!p3@HIF1A!1.12!63.53!HIF1A;;chr6:10412576..10412599,-!p5@TFAP2A!1.12!12.14!TFAP2A;;chr20:22565185..22565223,-!p3@FOXA2!1.12!12.14!FOXA2;;chr11:34642656..34642667,+!p2@EHF!1.10!11.63!EHF;;chr14:37051798..37051831,-!p1@NKX2-8!1.10!11.63!NKX2-8;;chr22:19748231..19748317,+!p1@TBX1!1.03!9.81!TBX1;;chr6:10413188..10413249,-!p7@TFAP2A!1.02!9.51!TFAP2A;;chr2:70142232..70142251,+!p1@MXD1!1.00!51.49!MXD1;;chr14:38064429..38064486,-!p1@FOXA1!1.00!9.00!FOXA1;;chr6:10415484..10415508,-!p3@TFAP2A!0.99!8.80!TFAP2A;;chr11:129245526..129245553,+!p1@BARX2!0.98!8.60!BARX2;;chr11:34645791..34645836,+!p3@EHF!0.98!8.60!EHF;;chr16:86612320..86612394,+!p1@FOXL1!0.98!8.50!FOXL1;;chr12:80084737..80084763,-!p3@PAWR!0.97!32.27!PAWR;;chr6:34524049..34524089,-!p2@SPDEF!0.97!8.29!SPDEF;;chr15:83953373..83953386,-!p2@BNC1!0.97!8.29!BNC1;;chr21:40177845..40177863,+!p1@ETS2!0.96!490.41!ETS2;;chr14:62162258..62162269,+!p2@HIF1A!0.96!81.13!HIF1A;;chr19:33865009..33865090,+!p3@CEBPG!0.94!10.42!CEBPG;;chr12:27485762..27485776,+!p3@ARNTL2!0.90!19.42!ARNTL2;;chr3:189507460..189507471,+!p3@TP63!0.90!6.88!TP63;;chr1:24645832..24645853,+!p1@GRHL3!0.90!6.88!GRHL3;;chr7:113726357..113726443,+!p1@FOXP2!0.89!12.04!FOXP2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.89!6.68!TFCP2L1;;chr16:79634624..79634642,-!p1@MAF!0.88!27.41!MAF;;chr2:238600933..238600985,+!p3@LRRFIP1!0.87!36.52!LRRFIP1;;chr4:57547454..57547469,-!p1@HOPX!0.86!6.27!HOPX;;chr6:10419768..10419819,-!p6@TFAP2A!0.86!6.27!TFAP2A;;chr19:9732460..9732472,-!p2@ZNF561!0.85!6.07!ZNF561;;chr2:239148671..239148686,-!p1@HES6!0.84!22.76!HES6;;chr1:158979872..158979898,+!p3@IFI16!0.82!18.51!IFI16;;chrY:21906594..21906622,-!p1@KDM5D!0.82!5.56!KDM5D;;chr18:19749541..19749557,+!p1@GATA6!0.80!18.01!GATA6;;chr1:935398..935465,-!p2@HES4!0.80!11.53!HES4;;chr6:34524025..34524045,-!p3@SPDEF!0.80!5.36!SPDEF;;chrY:2803415..2803468,+!p1@ZFY!0.80!5.26!ZFY;;chr1:209979449..209979460,-!p3@IRF6!0.80!5.26!IRF6;;chr13:73636252..73636307,+!p2@KLF5!0.79!6.17!KLF5;;chr12:27485823..27485868,+!p2@ARNTL2!0.78!22.25!ARNTL2;;chr3:138665969..138665993,-!p2@FOXL2!0.78!5.06!FOXL2;;chr3:189507523..189507535,+!p5@TP63!0.78!5.06!TP63;;chr20:18038521..18038571,-!p1@OVOL2!0.78!4.96!OVOL2;;chr8:49833948..49833973,-!p2@SNAI2!0.77!34.39!SNAI2;;chr20:55204351..55204377,+!p1@TFAP2C!0.77!6.37!TFAP2C;;chr21:40177892..40177903,+!p2@ETS2!0.76!20.84!ETS2;;chr1:154975229..154975247,+!p6@ZBTB7B!0.76!4.75!ZBTB7B;;chr9:110252035..110252057,-!p1@KLF4!0.75!82.04!KLF4;;chr2:46524878..46524891,+!p3@EPAS1!0.75!8.60!EPAS1;;chr7:17338239..17338262,+!p2@AHR!0.74!37.53!AHR;;chr3:5021026..5021035,+!p5@BHLHE40!0.74!5.66!BHLHE40;;chr7:97840743..97840786,+!p1@BHLHA15!0.74!4.55!BHLHA15;;chr11:65554528..65554546,+!p1@OVOL1!0.74!4.55!OVOL1;;chr20:22566120..22566136,-!p4@FOXA2!0.74!4.45!FOXA2;;chr1:935467..935484,-!p1@HES4!0.73!21.24!HES4;;chr12:53625966..53626012,-!p2@RARG!0.73!12.64!RARG;;chr8:49833978..49833996,-!p1@SNAI2!0.72!99.03!SNAI2;;chr6:126102292..126102329,+!p3@NCOA7!0.72!15.48!NCOA7;;chr7:17338266..17338282,+!p1@AHR!0.70!49.26!AHR;;chr14:61116183..61116208,-!p1@SIX1!0.70!17.10!SIX1;;chr1:24645921..24645973,+!p2@GRHL3!0.70!4.05!GRHL3;;chr1:158979792..158979814,+!p2@IFI16!0.69!42.49!IFI16;;chr3:138665937..138665968,-!p1@FOXL2!0.69!3.95!FOXL2;;chr17:45928443..45928473,-!p2@SP6!0.69!3.84!SP6;;chr19:45579725..45579743,-!p1@ZNF296!0.68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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065
|ffid_belonging_in_development=CL:0000223
|ffid_belonging_in_development=CL:0000223
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3.CNhs12016.11406-118E2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3.CNhs12016.11406-118E2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3.CNhs12016.11406-118E2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3.CNhs12016.11406-118E2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3.CNhs12016.11406-118E2.hg38.nobarcode.ctss.bed.gz
|id=FF:11406-118E2
|id=FF:11406-118E2
|is_a=EFO:0002091;;FF:0000166
|is_a=EFO:0002091;;FF:0000166
|is_obsolete=
|is_obsolete=
|library_id=CNhs12016
|library_id=CNhs12016
|library_id_phase_based=1:CNhs12016
|library_id_phase_based=2:CNhs12016
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11406
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GGTAGC.11406
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11406
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GGTAGC.11406
|name=Small Airway Epithelial Cells, donor3
|name=Small Airway Epithelial Cells, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12016,LSID837,release011,COMPLETED
|profile_hcage=CNhs12016,LSID837,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10014,,,
|profile_srnaseq=SRhi10014,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 65: Line 80:
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=PPARG:2.41424787946;TP53:2.1869692889;ZEB1:2.18502661034;HIF1A:2.09544556937;TBX4,5:1.81557012404;SNAI1..3:1.64137202299;ONECUT1,2:1.55917921485;VSX1,2:1.40436933667;TEF:1.33431871488;T:1.1962614171;NKX2-1,4:1.18902124521;MYOD1:1.17586347935;TFCP2:1.15354508302;XCPE1{core}:1.11526831104;SP1:1.09883508631;ZNF148:0.98024395738;TFAP2{A,C}:0.931881864147;LMO2:0.89763181822;bHLH_family:0.844107215346;TFAP2B:0.811751182215;ADNP_IRX_SIX_ZHX:0.770104725017;TEAD1:0.742719944082;IKZF1:0.728873859268;HLF:0.719398114841;FOXQ1:0.71100162184;CRX:0.696779902788;POU6F1:0.621160849658;EGR1..3:0.616914508316;FOXM1:0.550155975566;UFEwm:0.543829442985;PAX1,9:0.530164526214;ZNF423:0.526945950026;MAZ:0.497017593265;CEBPA,B_DDIT3:0.496429660279;AIRE:0.447446845272;MTF1:0.401589416569;TBP:0.384079207381;STAT5{A,B}:0.379556585202;HOX{A4,D4}:0.370593422964;FOS_FOS{B,L1}_JUN{B,D}:0.368530437468;HMX1:0.364021571489;GLI1..3:0.363045856094;ELK1,4_GABP{A,B1}:0.351954254588;SOX17:0.333517878845;ARID5B:0.326001313586;FOX{F1,F2,J1}:0.321977120416;TLX2:0.300808749103;MED-1{core}:0.299464876448;FOSL2:0.296854984169;ZFP161:0.291016250477;NKX2-3_NKX2-5:0.287112812613;ATF4:0.284331158196;SPZ1:0.252109261893;GTF2A1,2:0.241193851487;ZIC1..3:0.221047233106;NR6A1:0.217725137082;CDC5L:0.209483606114;HIC1:0.203415565395;FOXL1:0.201444465698;HAND1,2:0.200142064216;TFDP1:0.193622853263;EVI1:0.193125183639;PAX4:0.187603784273;NR5A1,2:0.174046236178;BACH2:0.16429583936;ESR1:0.155833436792;MTE{core}:0.152104539544;FOXN1:0.131700257079;NFIL3:0.128684321882;NKX2-2,8:0.100993394892;PAX5:0.0886315439466;ZBTB6:0.083713090228;POU2F1..3:0.0830613670768;KLF4:0.0717802414778;FOXO1,3,4:0.0711603169891;PAX2:0.0555564423313;TOPORS:-0.00185226233612;AR:-0.0132751932347;REST:-0.0179422590096;MAFB:-0.0349981381939;GFI1B:-0.0410653463833;HMGA1,2:-0.0634319549041;RXRA_VDR{dimer}:-0.0668826343241;MYBL2:-0.0856553812102;PATZ1:-0.0862529756017;ZBTB16:-0.096272470944;PDX1:-0.102607569578;RREB1:-0.120526516469;NKX3-2:-0.12141233356;NFE2:-0.124308779809;PAX6:-0.128210712086;ATF5_CREB3:-0.131806772477;POU3F1..4:-0.155248158681;GTF2I:-0.173042722454;ATF6:-0.177013917583;GZF1:-0.1832095918;NHLH1,2:-0.184962311681;ZNF143:-0.195825031117;RORA:-0.197099271575;POU1F1:-0.206624644284;CREB1:-0.208964430645;EBF1:-0.211059626169;HOX{A6,A7,B6,B7}:-0.211747372888;NFKB1_REL_RELA:-0.228424816735;LHX3,4:-0.232393290591;IRF7:-0.2381723728;RXR{A,B,G}:-0.240471767832;HNF1A:-0.254984056049;EP300:-0.255078650275;NKX3-1:-0.262240032781;RBPJ:-0.286404091221;GATA6:-0.288667631474;TLX1..3_NFIC{dimer}:-0.295253967172;TFAP4:-0.297162974222;AHR_ARNT_ARNT2:-0.304684335979;HSF1,2:-0.307955149825;SOX2:-0.311828540708;HNF4A_NR2F1,2:-0.316571286319;BREu{core}:-0.320071044334;STAT2,4,6:-0.339443229527;ZNF238:-0.346177114102;ATF2:-0.347270766938;NKX6-1,2:-0.34894041993;EN1,2:-0.385468625365;SPI1:-0.385959564435;MYFfamily:-0.395588967948;NRF1:-0.404907560205;CDX1,2,4:-0.406065444283;POU5F1:-0.4089021636;FOX{D1,D2}:-0.409250462293;STAT1,3:-0.410314382571;PAX8:-0.412863278512;FOXA2:-0.414585284032;SREBF1,2:-0.42806248098;SMAD1..7,9:-0.432287792999;FOXP3:-0.442966836417;JUN:-0.476093918848;CUX2:-0.479288584073;LEF1_TCF7_TCF7L1,2:-0.486737924056;ALX1:-0.490827438324;NANOG:-0.51740623577;HOX{A5,B5}:-0.523430349495;OCT4_SOX2{dimer}:-0.527313337663;ETS1,2:-0.540313410086;NFE2L2:-0.541164397669;ALX4:-0.543095390994;MZF1:-0.571962101257;FOXD3:-0.578152213385;ELF1,2,4:-0.584130249988;PRRX1,2:-0.600635121416;BPTF:-0.601947002645;PITX1..3:-0.627971987044;RUNX1..3:-0.655516543624;SPIB:-0.655731803045;RFX2..5_RFXANK_RFXAP:-0.679443230225;NFIX:-0.687435855775;ZNF384:-0.690820751548;PRDM1:-0.70077861587;MYB:-0.718102021827;HBP1_HMGB_SSRP1_UBTF:-0.740792261797;MEF2{A,B,C,D}:-0.757272475842;RFX1:-0.798265828209;IKZF2:-0.817339556939;FOX{I1,J2}:-0.844388262104;NFY{A,B,C}:-0.853449071817;NR1H4:-0.860532022688;NFATC1..3:-0.864092002036;SRF:-0.891306140689;NR3C1:-0.893220971897;PAX3,7:-0.928929801375;FOXP1:-0.933192652371;SOX{8,9,10}:-0.95714717158;DMAP1_NCOR{1,2}_SMARC:-0.96226037475;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.962944407044;IRF1,2:-0.967084523695;DBP:-0.985454885948;YY1:-1.03921006775;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.04197742845;HOXA9_MEIS1:-1.04867649954;GFI1:-1.04954545094;NFE2L1:-1.06059001954;TAL1_TCF{3,4,12}:-1.06823352994;E2F1..5:-1.08334263971;NANOG{mouse}:-1.13438621019;XBP1:-1.13485397524;GATA4:-1.13532155959;SOX5:-1.17795677366;TGIF1:-1.1934065862;PBX1:-1.26565026024;ESRRA:-1.30175628399;GCM1,2:-1.36902756071;HES1:-1.46862696718
|top_motifs=PPARG:2.41424787946;TP53:2.1869692889;ZEB1:2.18502661034;HIF1A:2.09544556937;TBX4,5:1.81557012404;SNAI1..3:1.64137202299;ONECUT1,2:1.55917921485;VSX1,2:1.40436933667;TEF:1.33431871488;T:1.1962614171;NKX2-1,4:1.18902124521;MYOD1:1.17586347935;TFCP2:1.15354508302;XCPE1{core}:1.11526831104;SP1:1.09883508631;ZNF148:0.98024395738;TFAP2{A,C}:0.931881864147;LMO2:0.89763181822;bHLH_family:0.844107215346;TFAP2B:0.811751182215;ADNP_IRX_SIX_ZHX:0.770104725017;TEAD1:0.742719944082;IKZF1:0.728873859268;HLF:0.719398114841;FOXQ1:0.71100162184;CRX:0.696779902788;POU6F1:0.621160849658;EGR1..3:0.616914508316;FOXM1:0.550155975566;UFEwm:0.543829442985;PAX1,9:0.530164526214;ZNF423:0.526945950026;MAZ:0.497017593265;CEBPA,B_DDIT3:0.496429660279;AIRE:0.447446845272;MTF1:0.401589416569;TBP:0.384079207381;STAT5{A,B}:0.379556585202;HOX{A4,D4}:0.370593422964;FOS_FOS{B,L1}_JUN{B,D}:0.368530437468;HMX1:0.364021571489;GLI1..3:0.363045856094;ELK1,4_GABP{A,B1}:0.351954254588;SOX17:0.333517878845;ARID5B:0.326001313586;FOX{F1,F2,J1}:0.321977120416;TLX2:0.300808749103;MED-1{core}:0.299464876448;FOSL2:0.296854984169;ZFP161:0.291016250477;NKX2-3_NKX2-5:0.287112812613;ATF4:0.284331158196;SPZ1:0.252109261893;GTF2A1,2:0.241193851487;ZIC1..3:0.221047233106;NR6A1:0.217725137082;CDC5L:0.209483606114;HIC1:0.203415565395;FOXL1:0.201444465698;HAND1,2:0.200142064216;TFDP1:0.193622853263;EVI1:0.193125183639;PAX4:0.187603784273;NR5A1,2:0.174046236178;BACH2:0.16429583936;ESR1:0.155833436792;MTE{core}:0.152104539544;FOXN1:0.131700257079;NFIL3:0.128684321882;NKX2-2,8:0.100993394892;PAX5:0.0886315439466;ZBTB6:0.083713090228;POU2F1..3:0.0830613670768;KLF4:0.0717802414778;FOXO1,3,4:0.0711603169891;PAX2:0.0555564423313;TOPORS:-0.00185226233612;AR:-0.0132751932347;REST:-0.0179422590096;MAFB:-0.0349981381939;GFI1B:-0.0410653463833;HMGA1,2:-0.0634319549041;RXRA_VDR{dimer}:-0.0668826343241;MYBL2:-0.0856553812102;PATZ1:-0.0862529756017;ZBTB16:-0.096272470944;PDX1:-0.102607569578;RREB1:-0.120526516469;NKX3-2:-0.12141233356;NFE2:-0.124308779809;PAX6:-0.128210712086;ATF5_CREB3:-0.131806772477;POU3F1..4:-0.155248158681;GTF2I:-0.173042722454;ATF6:-0.177013917583;GZF1:-0.1832095918;NHLH1,2:-0.184962311681;ZNF143:-0.195825031117;RORA:-0.197099271575;POU1F1:-0.206624644284;CREB1:-0.208964430645;EBF1:-0.211059626169;HOX{A6,A7,B6,B7}:-0.211747372888;NFKB1_REL_RELA:-0.228424816735;LHX3,4:-0.232393290591;IRF7:-0.2381723728;RXR{A,B,G}:-0.240471767832;HNF1A:-0.254984056049;EP300:-0.255078650275;NKX3-1:-0.262240032781;RBPJ:-0.286404091221;GATA6:-0.288667631474;TLX1..3_NFIC{dimer}:-0.295253967172;TFAP4:-0.297162974222;AHR_ARNT_ARNT2:-0.304684335979;HSF1,2:-0.307955149825;SOX2:-0.311828540708;HNF4A_NR2F1,2:-0.316571286319;BREu{core}:-0.320071044334;STAT2,4,6:-0.339443229527;ZNF238:-0.346177114102;ATF2:-0.347270766938;NKX6-1,2:-0.34894041993;EN1,2:-0.385468625365;SPI1:-0.385959564435;MYFfamily:-0.395588967948;NRF1:-0.404907560205;CDX1,2,4:-0.406065444283;POU5F1:-0.4089021636;FOX{D1,D2}:-0.409250462293;STAT1,3:-0.410314382571;PAX8:-0.412863278512;FOXA2:-0.414585284032;SREBF1,2:-0.42806248098;SMAD1..7,9:-0.432287792999;FOXP3:-0.442966836417;JUN:-0.476093918848;CUX2:-0.479288584073;LEF1_TCF7_TCF7L1,2:-0.486737924056;ALX1:-0.490827438324;NANOG:-0.51740623577;HOX{A5,B5}:-0.523430349495;OCT4_SOX2{dimer}:-0.527313337663;ETS1,2:-0.540313410086;NFE2L2:-0.541164397669;ALX4:-0.543095390994;MZF1:-0.571962101257;FOXD3:-0.578152213385;ELF1,2,4:-0.584130249988;PRRX1,2:-0.600635121416;BPTF:-0.601947002645;PITX1..3:-0.627971987044;RUNX1..3:-0.655516543624;SPIB:-0.655731803045;RFX2..5_RFXANK_RFXAP:-0.679443230225;NFIX:-0.687435855775;ZNF384:-0.690820751548;PRDM1:-0.70077861587;MYB:-0.718102021827;HBP1_HMGB_SSRP1_UBTF:-0.740792261797;MEF2{A,B,C,D}:-0.757272475842;RFX1:-0.798265828209;IKZF2:-0.817339556939;FOX{I1,J2}:-0.844388262104;NFY{A,B,C}:-0.853449071817;NR1H4:-0.860532022688;NFATC1..3:-0.864092002036;SRF:-0.891306140689;NR3C1:-0.893220971897;PAX3,7:-0.928929801375;FOXP1:-0.933192652371;SOX{8,9,10}:-0.95714717158;DMAP1_NCOR{1,2}_SMARC:-0.96226037475;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.962944407044;IRF1,2:-0.967084523695;DBP:-0.985454885948;YY1:-1.03921006775;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.04197742845;HOXA9_MEIS1:-1.04867649954;GFI1:-1.04954545094;NFE2L1:-1.06059001954;TAL1_TCF{3,4,12}:-1.06823352994;E2F1..5:-1.08334263971;NANOG{mouse}:-1.13438621019;XBP1:-1.13485397524;GATA4:-1.13532155959;SOX5:-1.17795677366;TGIF1:-1.1934065862;PBX1:-1.26565026024;ESRRA:-1.30175628399;GCM1,2:-1.36902756071;HES1:-1.46862696718
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11406-118E2;search_select_hide=table117:FF:11406-118E2
}}
}}

Latest revision as of 17:58, 4 June 2020

Name:Small Airway Epithelial Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12016
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stage50 years old adult
sexmale
age50
cell typepneumocyte
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005139
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12016 CAGE DRX008466 DRR009338
Accession ID Hg19

Library idBAMCTSS
CNhs12016 DRZ000763 DRZ002148
Accession ID Hg38

Library idBAMCTSS
CNhs12016 DRZ012113 DRZ013498
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005139
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.GGTAGC sRNA-Seq DRX037246 DRR041612
Accession ID Hg19

Library idBAMCTSS
SRhi10014.GGTAGC DRZ007254


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.131
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.424
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.08
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.08
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD196.625303e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.165
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.0418
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.247
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.325
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.333
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.076
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.354
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0418
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.48
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00231
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.533
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.08
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.148
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.148
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0418
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.435
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12016

Jaspar motifP-value
MA0002.20.00421
MA0003.10.831
MA0004.10.542
MA0006.10.043
MA0007.10.641
MA0009.10.209
MA0014.10.309
MA0017.10.183
MA0018.20.0725
MA0019.10.655
MA0024.14.23555e-5
MA0025.10.231
MA0027.10.679
MA0028.10.896
MA0029.10.145
MA0030.10.283
MA0031.10.77
MA0035.20.564
MA0038.10.0099
MA0039.20.0382
MA0040.10.516
MA0041.10.34
MA0042.10.835
MA0043.10.225
MA0046.10.829
MA0047.20.00275
MA0048.10.91
MA0050.11.87679e-8
MA0051.12.52678e-6
MA0052.10.00991
MA0055.10.219
MA0057.10.256
MA0058.10.172
MA0059.10.199
MA0060.14.28042e-5
MA0061.10.00426
MA0062.20.233
MA0065.20.306
MA0066.10.474
MA0067.10.215
MA0068.10.0556
MA0069.10.115
MA0070.10.927
MA0071.10.144
MA0072.10.416
MA0073.10.976
MA0074.10.728
MA0076.10.787
MA0077.10.377
MA0078.10.512
MA0079.20.0762
MA0080.26.2692e-10
MA0081.10.00237
MA0083.10.164
MA0084.10.278
MA0087.10.824
MA0088.10.0447
MA0090.10.0303
MA0091.10.0464
MA0092.10.0331
MA0093.10.473
MA0099.20.291
MA0100.10.0266
MA0101.10.0637
MA0102.20.0847
MA0103.11.74785e-8
MA0104.20.0826
MA0105.17.20503e-5
MA0106.13.18043e-8
MA0107.10.0329
MA0108.20.865
MA0111.10.316
MA0112.20.0655
MA0113.10.981
MA0114.10.209
MA0115.10.641
MA0116.10.00217
MA0117.10.556
MA0119.10.4
MA0122.10.373
MA0124.10.52
MA0125.10.178
MA0131.10.705
MA0135.10.268
MA0136.11.89665e-7
MA0137.20.0404
MA0138.20.52
MA0139.10.544
MA0140.10.669
MA0141.10.514
MA0142.10.13
MA0143.10.52
MA0144.10.67
MA0145.10.16
MA0146.10.429
MA0147.10.0546
MA0148.10.00507
MA0149.10.502
MA0150.10.366
MA0152.10.452
MA0153.10.45
MA0154.10.00704
MA0155.10.298
MA0156.12.50568e-4
MA0157.10.298
MA0159.10.966
MA0160.10.539
MA0162.10.718
MA0163.16.20361e-5
MA0164.10.812
MA0258.10.058
MA0259.10.94



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12016

Novel motifP-value
10.38
100.0325
1000.168
1010.0789
1020.403
1030.375
1040.778
1050.619
1060.201
1070.234
1080.15
1090.372
110.426
1100.462
1110.562
1120.89
1130.661
1140.977
1150.111
1160.48
1170.539
1180.321
1190.93
120.632
1200.139
1210.323
1220.255
1230.179
1240.00303
1250.969
1260.815
1270.346
1280.882
1290.999
130.88
1300.0618
1310.812
1320.237
1330.00198
1340.0936
1350.553
1360.0034
1370.0246
1380.934
1390.186
140.877
1400.183
1410.324
1420.392
1430.11
1440.133
1450.325
1460.1
1470.267
1480.0377
1490.442
150.391
1500.537
1510.732
1520.00737
1530.378
1540.838
1550.426
1560.821
1570.762
1580.496
1590.71
160.523
1600.0664
1610.29
1620.502
1630.941
1640.372
1650.87
1660.392
1670.372
1680.65
1690.972
170.985
180.463
190.349
20.69
200.466
210.848
220.996
230.293
240.483
250.356
260.611
270.532
280.862
290.997
30.335
300.208
310.783
320.176
330.9
340.237
350.00322
360.0105
370.907
380.92
390.702
40.787
400.585
410.071
420.319
430.499
440.712
450.397
460.458
470.405
480.731
490.0338
50.396
500.74
510.616
520.175
530.029
540.803
550.579
560.868
570.945
580.442
590.895
60.0786
600.341
610.739
620.181
630.707
640.594
650.867
660.754
670.893
680.308
690.344
70.672
700.0301
710.078
720.808
730.0218
740.00499
750.539
760.788
770.68
780.325
790.916
80.477
800.0997
810.0614
820.367
830.211
840.475
850.383
860.756
870.0339
880.54
890.388
90.224
900.15
910.477
920.847
930.71
940.202
950.367
960.0488
970.816
980.125
990.695



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12016


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002368 (respiratory epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000166 (human small airway epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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