FF:12234-129G2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005806 | |DRA_sample_Accession=CAGE@SAMD00005806 | ||
|accession_numbers=CAGE;DRX008088;DRR008960;DRZ000385;DRZ001770 | |accession_numbers=CAGE;DRX008088;DRR008960;DRZ000385;DRZ001770;DRZ011735;DRZ013120 | ||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136 | ||
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|def= | |def= | ||
|expression_enrichment_score=chr3:12330560..12330579,+!p1@PPARG!2.36!261.31!PPARG;;chr7:73038839..73038862,-!p1@MLXIPL!2.35!224.92!MLXIPL;;chr19:45971246..45971265,+!p1@FOSB!2.29!3327.91!FOSB;;chr19:33793430..33793447,-!p1@CEBPA!2.21!643.61!CEBPA;;chr16:85932760..85932775,+!p1@IRF8!2.07!116.39!IRF8;;chr11:113930425..113930471,+!p1@ZBTB16!1.86!100.98!ZBTB16;;chr9:110252035..110252057,-!p1@KLF4!1.85!1057.72!KLF4;;chr9:1050331..1050363,+!p1@DMRT2!1.84!68.53!DMRT2;;chr15:42749722..42749739,-!p2@ZFP106!1.83!116.72!ZFP106;;chr8:55370487..55370503,+!p1@SOX17!1.83!66.23!SOX17;;chr3:12392991..12393030,+!p7@PPARG!1.78!59.34!PPARG;;chr17:53342311..53342400,+!p1@HLF!1.77!66.56!HLF;;chr14:75745523..75745537,+!p1@FOS!1.74!5999.74!FOS;;chr7:19157248..19157268,-!p1@TWIST1!1.72!138.36!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!1.69!117.05!EBF1;;chr3:12329397..12329433,+!p2@PPARG!1.59!84.92!PPARG;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!35.08!ZBED1;;chr6:19837592..19837621,+!p1@ID4!1.54!197.71!ID4;;chr3:12392932..12392962,+!p8@PPARG!1.52!31.80!PPARG;;chr3:126076242..126076257,-!p1@KLF15!1.51!39.02!KLF15;;chr10:63809013..63809041,+!p3@ARID5B!1.46!149.18!ARID5B;;chr2:239756671..239756732,+!p1@TWIST2!1.45!84.92!TWIST2;;chr21:39870339..39870443,-!p1@ERG!1.45!26.89!ERG;;chr17:40440481..40440550,+!p1@STAT5A!1.42!175.41!STAT5A;;chr1:212782094..212782109,+!p1@ATF3!1.40!624.93!ATF3;;chr11:47279504..47279563,+!p1@NR1H3!1.40!53.77!NR1H3;;chr2:145271342..145271377,-!p5@ZEB2!1.40!23.93!ZEB2;;chr22:41763452..41763466,+!p2@TEF!1.39!23.61!TEF;;chr1:61548225..61548299,+!p1@NFIA!1.36!277.71!NFIA;;chr15:90294062..90294079,-!p2@MESP1!1.35!21.64!MESP1;;chr11:113930401..113930422,+!p3@ZBTB16!1.35!21.64!ZBTB16;;chr20:39317868..39317884,-!p1@MAFB!1.34!242.30!MAFB;;chr10:63808574..63808584,+!p27@ARID5B!1.34!20.98!ARID5B;;chr12:54779511..54779577,-!p5@ZNF385A!1.34!20.98!ZNF385A;;chr19:12902289..12902307,+!p1@JUNB!1.33!4460.71!JUNB;;chr1:59249688..59249703,-!p3@JUN!1.33!119.67!JUN;;chr1:59249707..59249727,-!p1@JUN!1.32!802.30!JUN;;chrX:66763856..66763896,+!p1@AR!1.32!28.20!AR;;chr13:41240717..41240735,-!p2@FOXO1!1.31!129.18!FOXO1;;chr3:12329358..12329393,+!p3@PPARG!1.31!47.21!PPARG;;chr20:50179368..50179392,-!p2@NFATC2!1.31!24.92!NFATC2;;chr12:24715376..24715432,-!p1@SOX5!1.31!24.26!SOX5;;chr10:45495946..45495976,+!p2@ZNF22!1.31!19.34!ZNF22;;chr6:152128810..152128827,+!p2@ESR1!1.31!19.34!ESR1;;chr3:187463179..187463201,-!p2@BCL6!1.30!77.05!BCL6;;chr7:19157043..19157088,-!p2@TWIST1!1.30!47.21!TWIST1;;chr5:137801160..137801176,+!p1@EGR1!1.29!1761.99!EGR1;;chr10:63809077..63809089,+!p5@ARID5B!1.29!40.00!ARID5B;;chr9:77112244..77112262,+!p1@RORB!1.29!20.66!RORB;;chr13:41240737..41240787,-!p1@FOXO1!1.28!211.48!FOXO1;;chr3:126076264..126076305,-!p2@KLF15!1.28!25.25!KLF15;;chr19:16435625..16435682,+!p1@KLF2!1.26!543.94!KLF2;;chr17:17726907..17726958,-!p2@SREBF1!1.26!105.25!SREBF1;;chr15:90294087..90294115,-!p1@MESP1!1.26!17.38!MESP1;;chr17:46690839..46690884,-!p1@HOXB8!1.26!17.05!HOXB8;;chr12:26277929..26277955,-!p3@BHLHE41!1.24!23.28!BHLHE41;;chr7:73038867..73038878,-!p2@MLXIPL!1.23!16.07!MLXIPL;;chr12:26277956..26277980,-!p1@BHLHE41!1.22!55.41!BHLHE41;;chr2:43454125..43454146,-!p2@ZFP36L2!1.22!15.74!ZFP36L2;;chr10:63809106..63809127,+!p1@ARID5B!1.21!200.66!ARID5B;;chr3:150126101..150126118,+!p6@TSC22D2!1.21!24.59!TSC22D2;;chr1:61548374..61548415,+!p4@NFIA!1.20!27.54!NFIA;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.57!TWIST2;;chrX:106960285..106960299,-!p1@TSC22D3!1.19!380.99!TSC22D3;;chr8:10588010..10588030,-!p1@SOX7!1.17!13.77!SOX7;;chr11:113930291..113930339,+!p2@ZBTB16!1.16!21.97!ZBTB16;;chr12:26277817..26277863,-!p2@BHLHE41!1.16!18.03!BHLHE41;;chr3:12393032..12393047,+!p15@PPARG!1.16!13.44!PPARG;;chr7:27192185..27192209,-!p1@HOXA3!1.15!13.11!HOXA3;;chr1:119530493..119530572,-!p1@TBX15!1.15!13.11!TBX15;;chr8:25902876..25902936,-!p1@EBF2!1.13!12.46!EBF2;;chr3:39195075..39195088,-!p1@CSRNP1!1.12!76.07!CSRNP1;;chr7:27196267..27196311,-!p1@HOXA7!1.12!12.13!HOXA7;;chr3:101568349..101568365,+!p1@NFKBIZ!1.11!610.17!NFKBIZ;;chr2:145274900..145274934,-!p4@ZEB2!1.11!72.13!ZEB2;;chrX:106960180..106960197,-!p2@TSC22D3!1.11!45.25!TSC22D3;;chr5:137804357..137804390,+!p4@EGR1!1.11!14.10!EGR1;;chr22:38598086..38598105,+!p1@MAFF!1.10!124.92!MAFF;;chr2:145277882..145277967,-!p3@ZEB2!1.10!20.00!ZEB2;;chr5:137804405..137804444,+!p3@EGR1!1.10!13.77!EGR1;;chr8:48650715..48650735,-!p1@CEBPD!1.09!1436.08!CEBPD;;chr8:128748470..128748487,+!p1@MYC!1.08!1219.03!MYC;;chr10:51572408..51572454,+!p3@NCOA4!1.08!64.59!NCOA4;;chr2:28618532..28618610,+!p4@FOSL2!1.08!19.02!FOSL2;;chrX:66763914..66763933,+!p3@AR!1.08!11.15!AR;;chr19:18392422..18392440,-!p1@JUND!1.07!1485.92!JUND;;chr5:2751762..2751784,-!p1@IRX2!1.07!10.82!IRX2;;chr14:35873947..35873965,-!p1@NFKBIA!1.06!672.79!NFKBIA;;chr6:126240380..126240430,+!p2@NCOA7!1.06!27.54!NCOA7;;chr3:24536253..24536328,-!p1@THRB!1.06!20.00!THRB;;chr12:54394309..54394336,+!p2@HOXC9!1.06!10.49!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!1.05!10.16!HOXC5;;chr5:131826457..131826514,-!p1@IRF1!1.04!390.82!IRF1;;chr7:113726357..113726443,+!p1@FOXP2!1.04!17.38!FOXP2;;chrX:107018969..107019024,-!p6@TSC22D3!1.04!13.77!TSC22D3;;chr1:23696348..23696363,-!p4@ZNF436!1.04!11.15!ZNF436;;chr5:137804484..137804498,+!p2@EGR1!1.03!39.34!EGR1;;chr14:35872453..35872485,-!p2@NFKBIA!1.02!23.61!NFKBIA;;chrX:56258844..56258882,+!p1@KLF8!1.02!13.11!KLF8;;chr10:3824576..3824590,-!p21@KLF6!1.02!9.51!KLF6;;chr17:40440446..40440464,+!p5@STAT5A!1.02!9.51!STAT5A;;chr2:145275162..145275202,-!p2@ZEB2!1.01!55.41!ZEB2;;chr8:22550982..22550999,-!p1@EGR3!1.01!26.56!EGR3;;chr5:158526459..158526481,-!p2@EBF1!1.01!12.46!EBF1;;chr19:16435523..16435619,+!p2@KLF2!1.00!12.79!KLF2;;chr5:158524951..158524969,-!p15@EBF1!0.99!8.85!EBF1;;chr7:63505799..63505904,+!p1@ZNF727!0.99!8.85!ZNF727;;chr3:12392972..12392983,+!p16@PPARG!0.98!8.52!PPARG;;chr19:46801639..46801699,+!p1@HIF3A!0.98!8.52!HIF3A;;chr1:59249732..59249749,-!p2@JUN!0.97!103.61!JUN;;chr3:114819124..114819200,-!p3@ZBTB20!0.97!19.67!ZBTB20;;chr1:158969752..158969780,+!p6@IFI16!0.97!14.75!IFI16;;chr2:61108695..61108753,+!p1@REL!0.96!57.38!REL;;chr19:12476443..12476467,-!p1@ZNF442!0.96!13.77!ZNF442;;chr2:145282041..145282092,-!p8@ZEB2!0.96!12.46!ZEB2;;chrX:56258811..56258838,+!p2@KLF8!0.96!11.15!KLF8;;chr9:14314476..14314487,-!p9@NFIB!0.96!8.20!NFIB;;chr2:176994408..176994492,+!p1@HOXD8!0.96!8.20!HOXD8;;chr3:114477934..114477961,-!p14@ZBTB20!0.96!8.20!ZBTB20;;chr14:75746722..75746777,+!p2@FOS!0.95!10.16!FOS;;chr3:12392909..12392921,+!p11@PPARG!0.95!7.87!PPARG;;chr7:28725740..28725778,+!p1@CREB5!0.94!71.15!CREB5;;chr14:61116183..61116208,-!p1@SIX1!0.94!30.16!SIX1;;chr19:49140572..49140594,-!p2@DBP!0.94!12.46!DBP;;chrX:66763815..66763854,+!p2@AR!0.94!10.16!AR;;chr8:81397820..81397836,+!p2@ZBTB10!0.94!9.84!ZBTB10;;chr1:6684918..6684936,+!p2@THAP3!0.93!9.18!THAP3;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.52!PRRX1;;chr17:40440359..40440386,+!p4@STAT5A!0.93!7.54!STAT5A;;chr10:3827389..3827408,-!p1@KLF6!0.92!584.27!KLF6;;chr8:106330656..106330684,+!p1@ZFPM2!0.92!20.00!ZFPM2;;chr17:38256799..38256815,-!p3@NR1D1!0.92!13.44!NR1D1;;chr3:101546827..101546847,+!p2@NFKBIZ!0.92!10.49!NFKBIZ;;chr3:39195037..39195069,-!p2@CSRNP1!0.91!45.90!CSRNP1;;chrX:131623044..131623089,-!p1@MBNL3!0.91!31.15!MBNL3;;chr9:73029219..73029289,-!p2@KLF9!0.91!22.62!KLF9;;chr10:63808979..63808990,+!p8@ARID5B!0.91!7.87!ARID5B;;chr12:54393880..54393962,+!p1@HOXC9!0.91!7.21!HOXC9;;chr5:158526756..158526797,-!p3@EBF1!0.91!7.21!EBF1;;chr1:164528410..164528428,+!p1@PBX1!0.90!54.75!PBX1;;chr11:113930355..113930366,+!p5@ZBTB16!0.90!6.89!ZBTB16;;chr5:158527104..158527135,-!p4@EBF1!0.90!6.89!EBF1;;chr7:73038889..73038905,-!p3@MLXIPL!0.90!6.89!MLXIPL;;chr3:24536485..24536500,-!p3@THRB!0.90!6.89!THRB;;chr10:114710098..114710130,+!p2@TCF7L2!0.89!52.79!TCF7L2;;chr19:49140609..49140643,-!p1@DBP!0.89!39.67!DBP;;chr17:46687959..46688007,-!p2@HOXB7!0.89!9.51!HOXB7;;chr2:46524537..46524553,+!p1@EPAS1!0.88!679.35!EPAS1;;chr7:64467057..64467078,-!p1@ZNF117!0.88!130.82!ZNF117;;chr12:52445218..52445237,+!p1@NR4A1!0.88!87.54!NR4A1;;chrX:101186981..101187030,-!p1@ZMAT1!0.88!22.30!ZMAT1;;chr1:23694556..23694584,-!p6@ZNF436!0.88!8.52!ZNF436;;chr12:54378923..54378966,+!p1@HOXC10!0.88!6.56!HOXC10;;chr5:158524625..158524669,-!p6@EBF1!0.88!6.56!EBF1;;chr17:46682321..46682362,-!p1@HOXB6!0.88!6.56!HOXB6;;chr22:41777927..41777971,+!p1@TEF!0.87!56.07!TEF;;chr3:114343768..114343822,-!p1@ZBTB20!0.86!28.85!ZBTB20;;chr18:77155922..77155939,+!p1@NFATC1!0.86!18.03!NFATC1;;chr18:53177899..53177918,-!p33@TCF4!0.86!6.23!TCF4;;chr2:68592406..68592424,+!p1@PLEK!0.86!6.23!PLEK;;chr5:88178983..88179012,-!p1@MEF2C!0.85!49.84!MEF2C;;chr1:61547894..61547968,+!p2@NFIA!0.85!18.69!NFIA;;chr6:106546808..106546833,+!p3@PRDM1!0.85!7.87!PRDM1;;chr9:73028332..73028385,-!p3@KLF9!0.84!21.97!KLF9;;chr1:8483756..8483809,-!p5@RERE!0.84!17.38!RERE;;chr1:164528340..164528379,+!p4@PBX1!0.84!15.41!PBX1;;chr9:110252074..110252079,-!p3@KLF4!0.84!10.16!KLF4;;chr11:16629261..16629284,-!p1@SOX6!0.84!5.90!SOX6;;chr17:40540591..40540600,-!p3@STAT3!0.84!5.90!STAT3;;chr18:45935720..45935772,-!p1@ZBTB7C!0.84!5.90!ZBTB7C;;chr20:48807351..48807384,+!p1@CEBPB!0.83!625.91!CEBPB;;chr9:94186101..94186122,-!p1@NFIL3!0.83!86.89!NFIL3;;chr9:73028814..73028895,-!p1@KLF9!0.83!61.64!KLF9;;chr9:94186131..94186174,-!p2@NFIL3!0.83!50.82!NFIL3;;chr17:38256822..38256851,-!p1@NR1D1!0.83!48.53!NR1D1;;chr18:53089538..53089578,-!p14@TCF4!0.82!5.57!TCF4;;chr7:27213893..27213954,-!p1@HOXA10!0.82!5.57!HOXA10;;chr10:45495898..45495907,+!p8@ZNF22!0.82!5.57!ZNF22;;chr3:187455486..187455504,-!p6@BCL6!0.82!5.57!BCL6;;chr3:24536332..24536358,-!p2@THRB!0.82!5.57!THRB;;chr22:38597987..38598021,+!p2@MAFF!0.81!36.07!MAFF;;chr19:6110474..6110551,-!p1@RFX2!0.81!35.41!RFX2;;chr9:14314131..14314147,-!p2@NFIB!0.81!33.12!NFIB;;chr1:23696308..23696339,-!p2@ZNF436!0.81!12.13!ZNF436;;chr10:63809090..63809097,+!p7@ARID5B!0.81!7.87!ARID5B;;chr9:14314522..14314556,-!p3@NFIB!0.80!13.11!NFI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| |expression_enrichment_score=chr3:12330560..12330579,+!p1@PPARG!2.36!261.31!PPARG;;chr7:73038839..73038862,-!p1@MLXIPL!2.35!224.92!MLXIPL;;chr19:45971246..45971265,+!p1@FOSB!2.29!3327.91!FOSB;;chr19:33793430..33793447,-!p1@CEBPA!2.21!643.61!CEBPA;;chr16:85932760..85932775,+!p1@IRF8!2.07!116.39!IRF8;;chr11:113930425..113930471,+!p1@ZBTB16!1.86!100.98!ZBTB16;;chr9:110252035..110252057,-!p1@KLF4!1.85!1057.72!KLF4;;chr9:1050331..1050363,+!p1@DMRT2!1.84!68.53!DMRT2;;chr15:42749722..42749739,-!p2@ZFP106!1.83!116.72!ZFP106;;chr8:55370487..55370503,+!p1@SOX17!1.83!66.23!SOX17;;chr3:12392991..12393030,+!p7@PPARG!1.78!59.34!PPARG;;chr17:53342311..53342400,+!p1@HLF!1.77!66.56!HLF;;chr14:75745523..75745537,+!p1@FOS!1.74!5999.74!FOS;;chr7:19157248..19157268,-!p1@TWIST1!1.72!138.36!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!1.69!117.05!EBF1;;chr3:12329397..12329433,+!p2@PPARG!1.59!84.92!PPARG;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!35.08!ZBED1;;chr6:19837592..19837621,+!p1@ID4!1.54!197.71!ID4;;chr3:12392932..12392962,+!p8@PPARG!1.52!31.80!PPARG;;chr3:126076242..126076257,-!p1@KLF15!1.51!39.02!KLF15;;chr10:63809013..63809041,+!p3@ARID5B!1.46!149.18!ARID5B;;chr2:239756671..239756732,+!p1@TWIST2!1.45!84.92!TWIST2;;chr21:39870339..39870443,-!p1@ERG!1.45!26.89!ERG;;chr17:40440481..40440550,+!p1@STAT5A!1.42!175.41!STAT5A;;chr1:212782094..212782109,+!p1@ATF3!1.40!624.93!ATF3;;chr11:47279504..47279563,+!p1@NR1H3!1.40!53.77!NR1H3;;chr2:145271342..145271377,-!p5@ZEB2!1.40!23.93!ZEB2;;chr22:41763452..41763466,+!p2@TEF!1.39!23.61!TEF;;chr1:61548225..61548299,+!p1@NFIA!1.36!277.71!NFIA;;chr15:90294062..90294079,-!p2@MESP1!1.35!21.64!MESP1;;chr11:113930401..113930422,+!p3@ZBTB16!1.35!21.64!ZBTB16;;chr20:39317868..39317884,-!p1@MAFB!1.34!242.30!MAFB;;chr10:63808574..63808584,+!p27@ARID5B!1.34!20.98!ARID5B;;chr12:54779511..54779577,-!p5@ZNF385A!1.34!20.98!ZNF385A;;chr19:12902289..12902307,+!p1@JUNB!1.33!4460.71!JUNB;;chr1:59249688..59249703,-!p3@JUN!1.33!119.67!JUN;;chr1:59249707..59249727,-!p1@JUN!1.32!802.30!JUN;;chrX:66763856..66763896,+!p1@AR!1.32!28.20!AR;;chr13:41240717..41240735,-!p2@FOXO1!1.31!129.18!FOXO1;;chr3:12329358..12329393,+!p3@PPARG!1.31!47.21!PPARG;;chr20:50179368..50179392,-!p2@NFATC2!1.31!24.92!NFATC2;;chr12:24715376..24715432,-!p1@SOX5!1.31!24.26!SOX5;;chr10:45495946..45495976,+!p2@ZNF22!1.31!19.34!ZNF22;;chr6:152128810..152128827,+!p2@ESR1!1.31!19.34!ESR1;;chr3:187463179..187463201,-!p2@BCL6!1.30!77.05!BCL6;;chr7:19157043..19157088,-!p2@TWIST1!1.30!47.21!TWIST1;;chr5:137801160..137801176,+!p1@EGR1!1.29!1761.99!EGR1;;chr10:63809077..63809089,+!p5@ARID5B!1.29!40.00!ARID5B;;chr9:77112244..77112262,+!p1@RORB!1.29!20.66!RORB;;chr13:41240737..41240787,-!p1@FOXO1!1.28!211.48!FOXO1;;chr3:126076264..126076305,-!p2@KLF15!1.28!25.25!KLF15;;chr19:16435625..16435682,+!p1@KLF2!1.26!543.94!KLF2;;chr17:17726907..17726958,-!p2@SREBF1!1.26!105.25!SREBF1;;chr15:90294087..90294115,-!p1@MESP1!1.26!17.38!MESP1;;chr17:46690839..46690884,-!p1@HOXB8!1.26!17.05!HOXB8;;chr12:26277929..26277955,-!p3@BHLHE41!1.24!23.28!BHLHE41;;chr7:73038867..73038878,-!p2@MLXIPL!1.23!16.07!MLXIPL;;chr12:26277956..26277980,-!p1@BHLHE41!1.22!55.41!BHLHE41;;chr2:43454125..43454146,-!p2@ZFP36L2!1.22!15.74!ZFP36L2;;chr10:63809106..63809127,+!p1@ARID5B!1.21!200.66!ARID5B;;chr3:150126101..150126118,+!p6@TSC22D2!1.21!24.59!TSC22D2;;chr1:61548374..61548415,+!p4@NFIA!1.20!27.54!NFIA;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.57!TWIST2;;chrX:106960285..106960299,-!p1@TSC22D3!1.19!380.99!TSC22D3;;chr8:10588010..10588030,-!p1@SOX7!1.17!13.77!SOX7;;chr11:113930291..113930339,+!p2@ZBTB16!1.16!21.97!ZBTB16;;chr12:26277817..26277863,-!p2@BHLHE41!1.16!18.03!BHLHE41;;chr3:12393032..12393047,+!p15@PPARG!1.16!13.44!PPARG;;chr7:27192185..27192209,-!p1@HOXA3!1.15!13.11!HOXA3;;chr1:119530493..119530572,-!p1@TBX15!1.15!13.11!TBX15;;chr8:25902876..25902936,-!p1@EBF2!1.13!12.46!EBF2;;chr3:39195075..39195088,-!p1@CSRNP1!1.12!76.07!CSRNP1;;chr7:27196267..27196311,-!p1@HOXA7!1.12!12.13!HOXA7;;chr3:101568349..101568365,+!p1@NFKBIZ!1.11!610.17!NFKBIZ;;chr2:145274900..145274934,-!p4@ZEB2!1.11!72.13!ZEB2;;chrX:106960180..106960197,-!p2@TSC22D3!1.11!45.25!TSC22D3;;chr5:137804357..137804390,+!p4@EGR1!1.11!14.10!EGR1;;chr22:38598086..38598105,+!p1@MAFF!1.10!124.92!MAFF;;chr2:145277882..145277967,-!p3@ZEB2!1.10!20.00!ZEB2;;chr5:137804405..137804444,+!p3@EGR1!1.10!13.77!EGR1;;chr8:48650715..48650735,-!p1@CEBPD!1.09!1436.08!CEBPD;;chr8:128748470..128748487,+!p1@MYC!1.08!1219.03!MYC;;chr10:51572408..51572454,+!p3@NCOA4!1.08!64.59!NCOA4;;chr2:28618532..28618610,+!p4@FOSL2!1.08!19.02!FOSL2;;chrX:66763914..66763933,+!p3@AR!1.08!11.15!AR;;chr19:18392422..18392440,-!p1@JUND!1.07!1485.92!JUND;;chr5:2751762..2751784,-!p1@IRX2!1.07!10.82!IRX2;;chr14:35873947..35873965,-!p1@NFKBIA!1.06!672.79!NFKBIA;;chr6:126240380..126240430,+!p2@NCOA7!1.06!27.54!NCOA7;;chr3:24536253..24536328,-!p1@THRB!1.06!20.00!THRB;;chr12:54394309..54394336,+!p2@HOXC9!1.06!10.49!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!1.05!10.16!HOXC5;;chr5:131826457..131826514,-!p1@IRF1!1.04!390.82!IRF1;;chr7:113726357..113726443,+!p1@FOXP2!1.04!17.38!FOXP2;;chrX:107018969..107019024,-!p6@TSC22D3!1.04!13.77!TSC22D3;;chr1:23696348..23696363,-!p4@ZNF436!1.04!11.15!ZNF436;;chr5:137804484..137804498,+!p2@EGR1!1.03!39.34!EGR1;;chr14:35872453..35872485,-!p2@NFKBIA!1.02!23.61!NFKBIA;;chrX:56258844..56258882,+!p1@KLF8!1.02!13.11!KLF8;;chr10:3824576..3824590,-!p21@KLF6!1.02!9.51!KLF6;;chr17:40440446..40440464,+!p5@STAT5A!1.02!9.51!STAT5A;;chr2:145275162..145275202,-!p2@ZEB2!1.01!55.41!ZEB2;;chr8:22550982..22550999,-!p1@EGR3!1.01!26.56!EGR3;;chr5:158526459..158526481,-!p2@EBF1!1.01!12.46!EBF1;;chr19:16435523..16435619,+!p2@KLF2!1.00!12.79!KLF2;;chr5:158524951..158524969,-!p15@EBF1!0.99!8.85!EBF1;;chr7:63505799..63505904,+!p1@ZNF727!0.99!8.85!ZNF727;;chr3:12392972..12392983,+!p16@PPARG!0.98!8.52!PPARG;;chr19:46801639..46801699,+!p1@HIF3A!0.98!8.52!HIF3A;;chr1:59249732..59249749,-!p2@JUN!0.97!103.61!JUN;;chr3:114819124..114819200,-!p3@ZBTB20!0.97!19.67!ZBTB20;;chr1:158969752..158969780,+!p6@IFI16!0.97!14.75!IFI16;;chr2:61108695..61108753,+!p1@REL!0.96!57.38!REL;;chr19:12476443..12476467,-!p1@ZNF442!0.96!13.77!ZNF442;;chr2:145282041..145282092,-!p8@ZEB2!0.96!12.46!ZEB2;;chrX:56258811..56258838,+!p2@KLF8!0.96!11.15!KLF8;;chr9:14314476..14314487,-!p9@NFIB!0.96!8.20!NFIB;;chr2:176994408..176994492,+!p1@HOXD8!0.96!8.20!HOXD8;;chr3:114477934..114477961,-!p14@ZBTB20!0.96!8.20!ZBTB20;;chr14:75746722..75746777,+!p2@FOS!0.95!10.16!FOS;;chr3:12392909..12392921,+!p11@PPARG!0.95!7.87!PPARG;;chr7:28725740..28725778,+!p1@CREB5!0.94!71.15!CREB5;;chr14:61116183..61116208,-!p1@SIX1!0.94!30.16!SIX1;;chr19:49140572..49140594,-!p2@DBP!0.94!12.46!DBP;;chrX:66763815..66763854,+!p2@AR!0.94!10.16!AR;;chr8:81397820..81397836,+!p2@ZBTB10!0.94!9.84!ZBTB10;;chr1:6684918..6684936,+!p2@THAP3!0.93!9.18!THAP3;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.52!PRRX1;;chr17:40440359..40440386,+!p4@STAT5A!0.93!7.54!STAT5A;;chr10:3827389..3827408,-!p1@KLF6!0.92!584.27!KLF6;;chr8:106330656..106330684,+!p1@ZFPM2!0.92!20.00!ZFPM2;;chr17:38256799..38256815,-!p3@NR1D1!0.92!13.44!NR1D1;;chr3:101546827..101546847,+!p2@NFKBIZ!0.92!10.49!NFKBIZ;;chr3:39195037..39195069,-!p2@CSRNP1!0.91!45.90!CSRNP1;;chrX:131623044..131623089,-!p1@MBNL3!0.91!31.15!MBNL3;;chr9:73029219..73029289,-!p2@KLF9!0.91!22.62!KLF9;;chr10:63808979..63808990,+!p8@ARID5B!0.91!7.87!ARID5B;;chr12:54393880..54393962,+!p1@HOXC9!0.91!7.21!HOXC9;;chr5:158526756..158526797,-!p3@EBF1!0.91!7.21!EBF1;;chr1:164528410..164528428,+!p1@PBX1!0.90!54.75!PBX1;;chr11:113930355..113930366,+!p5@ZBTB16!0.90!6.89!ZBTB16;;chr5:158527104..158527135,-!p4@EBF1!0.90!6.89!EBF1;;chr7:73038889..73038905,-!p3@MLXIPL!0.90!6.89!MLXIPL;;chr3:24536485..24536500,-!p3@THRB!0.90!6.89!THRB;;chr10:114710098..114710130,+!p2@TCF7L2!0.89!52.79!TCF7L2;;chr19:49140609..49140643,-!p1@DBP!0.89!39.67!DBP;;chr17:46687959..46688007,-!p2@HOXB7!0.89!9.51!HOXB7;;chr2:46524537..46524553,+!p1@EPAS1!0.88!679.35!EPAS1;;chr7:64467057..64467078,-!p1@ZNF117!0.88!130.82!ZNF117;;chr12:52445218..52445237,+!p1@NR4A1!0.88!87.54!NR4A1;;chrX:101186981..101187030,-!p1@ZMAT1!0.88!22.30!ZMAT1;;chr1:23694556..23694584,-!p6@ZNF436!0.88!8.52!ZNF436;;chr12:54378923..54378966,+!p1@HOXC10!0.88!6.56!HOXC10;;chr5:158524625..158524669,-!p6@EBF1!0.88!6.56!EBF1;;chr17:46682321..46682362,-!p1@HOXB6!0.88!6.56!HOXB6;;chr22:41777927..41777971,+!p1@TEF!0.87!56.07!TEF;;chr3:114343768..114343822,-!p1@ZBTB20!0.86!28.85!ZBTB20;;chr18:77155922..77155939,+!p1@NFATC1!0.86!18.03!NFATC1;;chr18:53177899..53177918,-!p33@TCF4!0.86!6.23!TCF4;;chr2:68592406..68592424,+!p1@PLEK!0.86!6.23!PLEK;;chr5:88178983..88179012,-!p1@MEF2C!0.85!49.84!MEF2C;;chr1:61547894..61547968,+!p2@NFIA!0.85!18.69!NFIA;;chr6:106546808..106546833,+!p3@PRDM1!0.85!7.87!PRDM1;;chr9:73028332..73028385,-!p3@KLF9!0.84!21.97!KLF9;;chr1:8483756..8483809,-!p5@RERE!0.84!17.38!RERE;;chr1:164528340..164528379,+!p4@PBX1!0.84!15.41!PBX1;;chr9:110252074..110252079,-!p3@KLF4!0.84!10.16!KLF4;;chr11:16629261..16629284,-!p1@SOX6!0.84!5.90!SOX6;;chr17:40540591..40540600,-!p3@STAT3!0.84!5.90!STAT3;;chr18:45935720..45935772,-!p1@ZBTB7C!0.84!5.90!ZBTB7C;;chr20:48807351..48807384,+!p1@CEBPB!0.83!625.91!CEBPB;;chr9:94186101..94186122,-!p1@NFIL3!0.83!86.89!NFIL3;;chr9:73028814..73028895,-!p1@KLF9!0.83!61.64!KLF9;;chr9:94186131..94186174,-!p2@NFIL3!0.83!50.82!NFIL3;;chr17:38256822..38256851,-!p1@NR1D1!0.83!48.53!NR1D1;;chr18:53089538..53089578,-!p14@TCF4!0.82!5.57!TCF4;;chr7:27213893..27213954,-!p1@HOXA10!0.82!5.57!HOXA10;;chr10:45495898..45495907,+!p8@ZNF22!0.82!5.57!ZNF22;;chr3:187455486..187455504,-!p6@BCL6!0.82!5.57!BCL6;;chr3:24536332..24536358,-!p2@THRB!0.82!5.57!THRB;;chr22:38597987..38598021,+!p2@MAFF!0.81!36.07!MAFF;;chr19:6110474..6110551,-!p1@RFX2!0.81!35.41!RFX2;;chr9:14314131..14314147,-!p2@NFIB!0.81!33.12!NFIB;;chr1:23696308..23696339,-!p2@ZNF436!0.81!12.13!ZNF436;;chr10:63809090..63809097,+!p7@ARID5B!0.81!7.87!ARID5B;;chr9:14314522..14314556,-!p3@NFIB!0.80!13.11!NFI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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000136 | |||
|ffid_belonging_in_development=CL:0000134 | |ffid_belonging_in_development=CL:0000134 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor4.CNhs12562.12234-129G2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor4.CNhs12562.12234-129G2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor4.CNhs12562.12234-129G2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor4.CNhs12562.12234-129G2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor4.CNhs12562.12234-129G2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12234-129G2 | |id=FF:12234-129G2 | ||
|is_a=EFO:0002091;;FF:0000266 | |is_a=EFO:0002091;;FF:0000266 | ||
Line 46: | Line 52: | ||
|library_id=CNhs12562 | |library_id=CNhs12562 | ||
|library_id_phase_based=2:CNhs12562 | |library_id_phase_based=2:CNhs12562 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12234 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12234 | |||
|name=mature adipocyte, donor4 | |name=mature adipocyte, donor4 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 53: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 90: | Line 101: | ||
|top_motifs=RXR{A,B,G}_{NR1H2,PPAR}dimers:3.1691786956;STAT2,4,6:3.0890586847;AR:2.59974175261;FOXO1,3,4:2.59089270292;RORA:2.48551891734;HBP1_HMGB_SSRP1_UBTF:2.45304893483;PDX1:2.3738891648;ESRRA:2.34716771604;NFIL3:2.263220011;FOX{D1,D2}:2.18171064659;XBP1:2.06488513424;NFATC1..3:1.92986219568;TGIF1:1.70497683659;IKZF1:1.704841217;ATF6:1.65053348793;STAT1,3:1.64974825853;GCM1,2:1.54801658237;SPZ1:1.47541516713;DBP:1.43974165512;TFCP2:1.42753332185;EP300:1.39099334792;HNF4A_NR2F1,2:1.34509793263;MTF1:1.31473178263;SOX5:1.29907560771;ATF2:1.28056192402;ARID5B:1.27475869871;HMX1:1.20479355627;MAZ:1.18584060258;NFIX:1.17898093246;FOXA2:1.17495499929;ZNF238:1.14605554252;TLX1..3_NFIC{dimer}:1.10403893829;bHLH_family:1.080576698;MEF2{A,B,C,D}:1.08040383379;SRF:1.04194031453;NR3C1:1.03903879466;FOXL1:1.034938839;MYBL2:1.03326629;PAX6:1.01575681999;HSF1,2:1.01212977872;SP1:0.99377725063;NFE2L1:0.959660443818;TBP:0.946323274119;MED-1{core}:0.942524500581;NR1H4:0.93348840259;PRRX1,2:0.933065525063;RXR{A,B,G}:0.924071460513;FOXN1:0.913112000058;TFAP2{A,C}:0.898419976095;CEBPA,B_DDIT3:0.856761384807;JUN:0.813794105345;HLF:0.796071745444;EBF1:0.785686438699;EN1,2:0.782940777959;TEAD1:0.744860819876;NANOG{mouse}:0.735413248182;TFAP2B:0.726113390187;FOXD3:0.719520913855;ATF4:0.719376759839;NHLH1,2:0.718292436032;NR6A1:0.707181292307;EGR1..3:0.705984888881;NFE2:0.699942826691;NANOG:0.696203633431;GFI1B:0.694946449616;RFX2..5_RFXANK_RFXAP:0.690189427185;CDC5L:0.677406467578;FOXP3:0.662786763078;HOXA9_MEIS1:0.658207503257;HOX{A5,B5}:0.644285318224;MAFB:0.63898092305;PATZ1:0.630977863519;NKX3-2:0.627395550972;GZF1:0.626192950877;MTE{core}:0.622219643795;HOX{A4,D4}:0.606185690683;HIC1:0.555901007538;TEF:0.526090614187;ATF5_CREB3:0.492079092698;IKZF2:0.48325923608;GTF2I:0.469784475586;NFKB1_REL_RELA:0.460780743289;STAT5{A,B}:0.401248746669;LHX3,4:0.401058776317;BREu{core}:0.399775621633;FOXQ1:0.390584681495;MYFfamily:0.387400499916;NKX2-1,4:0.360596082416;TLX2:0.359678338234;FOS_FOS{B,L1}_JUN{B,D}:0.354500470636;GTF2A1,2:0.30403207925;SREBF1,2:0.289776016717;MZF1:0.285034544658;CREB1:0.266246663322;BPTF:0.265591456933;FOX{I1,J2}:0.257370399399;ADNP_IRX_SIX_ZHX:0.247362625386;FOSL2:0.214367520481;NKX2-2,8:0.212685666329;ZNF384:0.191340925081;HNF1A:0.170150669399;FOX{F1,F2,J1}:0.133254432916;IRF7:0.125101208586;BACH2:0.114563262051;PAX2:0.0931505886942;TBX4,5:0.0917319678305;ZNF423:0.0735577707864;POU6F1:0.0601975356948;RFX1:0.0348538471706;SOX17:0.0244851503787;TFAP4:0.00580080520028;NR5A1,2:0.00030034290855;PAX5:-0.00019307199413;FOXP1:-0.0158513556795;DMAP1_NCOR{1,2}_SMARC:-0.0408043694614;ZFP161:-0.0587450262821;NKX6-1,2:-0.0730793006568;ZIC1..3:-0.0949620352568;NFY{A,B,C}:-0.101024672153;RBPJ:-0.115163974935;GATA6:-0.130765554847;NKX2-3_NKX2-5:-0.139367484017;ETS1,2:-0.141610633721;PAX8:-0.142257520189;PBX1:-0.160768824625;HIF1A:-0.165665263977;IRF1,2:-0.17911136735;ZNF148:-0.196655217017;GATA4:-0.210744553876;HAND1,2:-0.218653475585;SMAD1..7,9:-0.224277773117;ELF1,2,4:-0.238458785866;TP53:-0.252270820578;AHR_ARNT_ARNT2:-0.27361563547;REST:-0.286837701964;NRF1:-0.329647995229;ZNF143:-0.34462288702;SPIB:-0.350859023498;SOX2:-0.363761487984;YY1:-0.369716838841;CUX2:-0.384562977231;SPI1:-0.410195694141;ZBTB6:-0.420765381617;NFE2L2:-0.420882019291;VSX1,2:-0.422175467662;TAL1_TCF{3,4,12}:-0.449736696817;GFI1:-0.472145568566;RXRA_VDR{dimer}:-0.477819033322;RUNX1..3:-0.487570797919;GLI1..3:-0.501794785846;HES1:-0.509314443954;KLF4:-0.52783224253;PRDM1:-0.534092484794;CRX:-0.558783224413;PPARG:-0.572414294161;XCPE1{core}:-0.598651892836;PAX1,9:-0.605528052065;LEF1_TCF7_TCF7L1,2:-0.606335028517;RREB1:-0.622016225378;ESR1:-0.656714801705;OCT4_SOX2{dimer}:-0.658820185265;PAX3,7:-0.682420685948;MYB:-0.690672664544;E2F1..5:-0.733822048939;ALX1:-0.751965984414;SOX{8,9,10}:-0.773258360219;T:-0.796965602045;PAX4:-0.798460278965;ELK1,4_GABP{A,B1}:-0.834451550028;HOX{A6,A7,B6,B7}:-0.834586309032;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.83465679316;HMGA1,2:-0.878479228906;PITX1..3:-0.881914520228;UFEwm:-0.898342551095;POU2F1..3:-0.975808394403;ZEB1:-0.985863012495;LMO2:-1.00927937345;SNAI1..3:-1.01672455345;ALX4:-1.02037137421;EVI1:-1.06882500962;TFDP1:-1.07349378897;ZBTB16:-1.07811065624;POU5F1:-1.32683186265;POU1F1:-1.35391596606;FOXM1:-1.36381973182;CDX1,2,4:-1.37271965638;POU3F1..4:-1.50190380335;ONECUT1,2:-1.64042249134;AIRE:-1.67069182697;NKX3-1:-1.7137140742;TOPORS:-1.86117208994;MYOD1:-1.97677633283 | |top_motifs=RXR{A,B,G}_{NR1H2,PPAR}dimers:3.1691786956;STAT2,4,6:3.0890586847;AR:2.59974175261;FOXO1,3,4:2.59089270292;RORA:2.48551891734;HBP1_HMGB_SSRP1_UBTF:2.45304893483;PDX1:2.3738891648;ESRRA:2.34716771604;NFIL3:2.263220011;FOX{D1,D2}:2.18171064659;XBP1:2.06488513424;NFATC1..3:1.92986219568;TGIF1:1.70497683659;IKZF1:1.704841217;ATF6:1.65053348793;STAT1,3:1.64974825853;GCM1,2:1.54801658237;SPZ1:1.47541516713;DBP:1.43974165512;TFCP2:1.42753332185;EP300:1.39099334792;HNF4A_NR2F1,2:1.34509793263;MTF1:1.31473178263;SOX5:1.29907560771;ATF2:1.28056192402;ARID5B:1.27475869871;HMX1:1.20479355627;MAZ:1.18584060258;NFIX:1.17898093246;FOXA2:1.17495499929;ZNF238:1.14605554252;TLX1..3_NFIC{dimer}:1.10403893829;bHLH_family:1.080576698;MEF2{A,B,C,D}:1.08040383379;SRF:1.04194031453;NR3C1:1.03903879466;FOXL1:1.034938839;MYBL2:1.03326629;PAX6:1.01575681999;HSF1,2:1.01212977872;SP1:0.99377725063;NFE2L1:0.959660443818;TBP:0.946323274119;MED-1{core}:0.942524500581;NR1H4:0.93348840259;PRRX1,2:0.933065525063;RXR{A,B,G}:0.924071460513;FOXN1:0.913112000058;TFAP2{A,C}:0.898419976095;CEBPA,B_DDIT3:0.856761384807;JUN:0.813794105345;HLF:0.796071745444;EBF1:0.785686438699;EN1,2:0.782940777959;TEAD1:0.744860819876;NANOG{mouse}:0.735413248182;TFAP2B:0.726113390187;FOXD3:0.719520913855;ATF4:0.719376759839;NHLH1,2:0.718292436032;NR6A1:0.707181292307;EGR1..3:0.705984888881;NFE2:0.699942826691;NANOG:0.696203633431;GFI1B:0.694946449616;RFX2..5_RFXANK_RFXAP:0.690189427185;CDC5L:0.677406467578;FOXP3:0.662786763078;HOXA9_MEIS1:0.658207503257;HOX{A5,B5}:0.644285318224;MAFB:0.63898092305;PATZ1:0.630977863519;NKX3-2:0.627395550972;GZF1:0.626192950877;MTE{core}:0.622219643795;HOX{A4,D4}:0.606185690683;HIC1:0.555901007538;TEF:0.526090614187;ATF5_CREB3:0.492079092698;IKZF2:0.48325923608;GTF2I:0.469784475586;NFKB1_REL_RELA:0.460780743289;STAT5{A,B}:0.401248746669;LHX3,4:0.401058776317;BREu{core}:0.399775621633;FOXQ1:0.390584681495;MYFfamily:0.387400499916;NKX2-1,4:0.360596082416;TLX2:0.359678338234;FOS_FOS{B,L1}_JUN{B,D}:0.354500470636;GTF2A1,2:0.30403207925;SREBF1,2:0.289776016717;MZF1:0.285034544658;CREB1:0.266246663322;BPTF:0.265591456933;FOX{I1,J2}:0.257370399399;ADNP_IRX_SIX_ZHX:0.247362625386;FOSL2:0.214367520481;NKX2-2,8:0.212685666329;ZNF384:0.191340925081;HNF1A:0.170150669399;FOX{F1,F2,J1}:0.133254432916;IRF7:0.125101208586;BACH2:0.114563262051;PAX2:0.0931505886942;TBX4,5:0.0917319678305;ZNF423:0.0735577707864;POU6F1:0.0601975356948;RFX1:0.0348538471706;SOX17:0.0244851503787;TFAP4:0.00580080520028;NR5A1,2:0.00030034290855;PAX5:-0.00019307199413;FOXP1:-0.0158513556795;DMAP1_NCOR{1,2}_SMARC:-0.0408043694614;ZFP161:-0.0587450262821;NKX6-1,2:-0.0730793006568;ZIC1..3:-0.0949620352568;NFY{A,B,C}:-0.101024672153;RBPJ:-0.115163974935;GATA6:-0.130765554847;NKX2-3_NKX2-5:-0.139367484017;ETS1,2:-0.141610633721;PAX8:-0.142257520189;PBX1:-0.160768824625;HIF1A:-0.165665263977;IRF1,2:-0.17911136735;ZNF148:-0.196655217017;GATA4:-0.210744553876;HAND1,2:-0.218653475585;SMAD1..7,9:-0.224277773117;ELF1,2,4:-0.238458785866;TP53:-0.252270820578;AHR_ARNT_ARNT2:-0.27361563547;REST:-0.286837701964;NRF1:-0.329647995229;ZNF143:-0.34462288702;SPIB:-0.350859023498;SOX2:-0.363761487984;YY1:-0.369716838841;CUX2:-0.384562977231;SPI1:-0.410195694141;ZBTB6:-0.420765381617;NFE2L2:-0.420882019291;VSX1,2:-0.422175467662;TAL1_TCF{3,4,12}:-0.449736696817;GFI1:-0.472145568566;RXRA_VDR{dimer}:-0.477819033322;RUNX1..3:-0.487570797919;GLI1..3:-0.501794785846;HES1:-0.509314443954;KLF4:-0.52783224253;PRDM1:-0.534092484794;CRX:-0.558783224413;PPARG:-0.572414294161;XCPE1{core}:-0.598651892836;PAX1,9:-0.605528052065;LEF1_TCF7_TCF7L1,2:-0.606335028517;RREB1:-0.622016225378;ESR1:-0.656714801705;OCT4_SOX2{dimer}:-0.658820185265;PAX3,7:-0.682420685948;MYB:-0.690672664544;E2F1..5:-0.733822048939;ALX1:-0.751965984414;SOX{8,9,10}:-0.773258360219;T:-0.796965602045;PAX4:-0.798460278965;ELK1,4_GABP{A,B1}:-0.834451550028;HOX{A6,A7,B6,B7}:-0.834586309032;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.83465679316;HMGA1,2:-0.878479228906;PITX1..3:-0.881914520228;UFEwm:-0.898342551095;POU2F1..3:-0.975808394403;ZEB1:-0.985863012495;LMO2:-1.00927937345;SNAI1..3:-1.01672455345;ALX4:-1.02037137421;EVI1:-1.06882500962;TFDP1:-1.07349378897;ZBTB16:-1.07811065624;POU5F1:-1.32683186265;POU1F1:-1.35391596606;FOXM1:-1.36381973182;CDX1,2,4:-1.37271965638;POU3F1..4:-1.50190380335;ONECUT1,2:-1.64042249134;AIRE:-1.67069182697;NKX3-1:-1.7137140742;TOPORS:-1.86117208994;MYOD1:-1.97677633283 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12234-129G2;search_select_hide=table117:FF:12234-129G2 | |||
}} | }} |
Latest revision as of 18:35, 4 June 2020
Name: | mature adipocyte, donor4 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12562 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12562
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12562
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.128 |
10 | 10 | 0.407 |
100 | 100 | 0.853 |
101 | 101 | 0.566 |
102 | 102 | 0.0875 |
103 | 103 | 0.395 |
104 | 104 | 0.997 |
105 | 105 | 0.83 |
106 | 106 | 0.926 |
107 | 107 | 0.711 |
108 | 108 | 0.452 |
109 | 109 | 0.093 |
11 | 11 | 0.0828 |
110 | 110 | 0.0707 |
111 | 111 | 0.0561 |
112 | 112 | 0.446 |
113 | 113 | 0.571 |
114 | 114 | 0.0247 |
115 | 115 | 0.595 |
116 | 116 | 0.0946 |
117 | 117 | 0.0162 |
118 | 118 | 0.328 |
119 | 119 | 0.639 |
12 | 12 | 0.378 |
120 | 120 | 0.0678 |
121 | 121 | 0.721 |
122 | 122 | 0.926 |
123 | 123 | 0.0183 |
124 | 124 | 0.463 |
125 | 125 | 0.11 |
126 | 126 | 0.978 |
127 | 127 | 0.129 |
128 | 128 | 0.798 |
129 | 129 | 0.748 |
13 | 13 | 0.928 |
130 | 130 | 0.308 |
131 | 131 | 0.29 |
132 | 132 | 0.566 |
133 | 133 | 0.431 |
134 | 134 | 0.602 |
135 | 135 | 0.757 |
136 | 136 | 0.354 |
137 | 137 | 0.769 |
138 | 138 | 0.0899 |
139 | 139 | 0.668 |
14 | 14 | 0.918 |
140 | 140 | 0.004 |
141 | 141 | 0.366 |
142 | 142 | 0.944 |
143 | 143 | 0.03 |
144 | 144 | 0.648 |
145 | 145 | 0.113 |
146 | 146 | 0.313 |
147 | 147 | 0.573 |
148 | 148 | 0.0837 |
149 | 149 | 0.518 |
15 | 15 | 0.326 |
150 | 150 | 0.726 |
151 | 151 | 0.319 |
152 | 152 | 0.858 |
153 | 153 | 0.0491 |
154 | 154 | 0.249 |
155 | 155 | 0.215 |
156 | 156 | 0.38 |
157 | 157 | 0.567 |
158 | 158 | 0.394 |
159 | 159 | 0.188 |
16 | 16 | 0.176 |
160 | 160 | 0.379 |
161 | 161 | 0.301 |
162 | 162 | 0.701 |
163 | 163 | 0.733 |
164 | 164 | 0.323 |
165 | 165 | 0.359 |
166 | 166 | 0.839 |
167 | 167 | 0.962 |
168 | 168 | 0.852 |
169 | 169 | 0.157 |
17 | 17 | 0.309 |
18 | 18 | 0.0802 |
19 | 19 | 0.994 |
2 | 2 | 0.666 |
20 | 20 | 0.891 |
21 | 21 | 0.326 |
22 | 22 | 0.681 |
23 | 23 | 0.508 |
24 | 24 | 0.858 |
25 | 25 | 0.96 |
26 | 26 | 0.0625 |
27 | 27 | 0.211 |
28 | 28 | 0.963 |
29 | 29 | 0.171 |
3 | 3 | 0.149 |
30 | 30 | 0.485 |
31 | 31 | 0.601 |
32 | 32 | 2.18799e-4 |
33 | 33 | 0.729 |
34 | 34 | 0.87 |
35 | 35 | 0.241 |
36 | 36 | 0.789 |
37 | 37 | 0.474 |
38 | 38 | 0.386 |
39 | 39 | 0.0884 |
4 | 4 | 0.139 |
40 | 40 | 0.35 |
41 | 41 | 0.928 |
42 | 42 | 0.474 |
43 | 43 | 0.416 |
44 | 44 | 0.00641 |
45 | 45 | 0.484 |
46 | 46 | 0.0463 |
47 | 47 | 0.0797 |
48 | 48 | 0.0595 |
49 | 49 | 0.101 |
5 | 5 | 0.158 |
50 | 50 | 0.796 |
51 | 51 | 0.568 |
52 | 52 | 0.285 |
53 | 53 | 0.796 |
54 | 54 | 0.796 |
55 | 55 | 0.0861 |
56 | 56 | 0.244 |
57 | 57 | 0.341 |
58 | 58 | 0.738 |
59 | 59 | 0.107 |
6 | 6 | 0.952 |
60 | 60 | 0.442 |
61 | 61 | 0.0895 |
62 | 62 | 0.587 |
63 | 63 | 0.56 |
64 | 64 | 0.0664 |
65 | 65 | 0.6 |
66 | 66 | 0.608 |
67 | 67 | 0.439 |
68 | 68 | 0.842 |
69 | 69 | 0.00288 |
7 | 7 | 0.337 |
70 | 70 | 0.0287 |
71 | 71 | 0.0453 |
72 | 72 | 0.76 |
73 | 73 | 0.347 |
74 | 74 | 0.787 |
75 | 75 | 0.12 |
76 | 76 | 0.337 |
77 | 77 | 0.254 |
78 | 78 | 0.853 |
79 | 79 | 0.0724 |
8 | 8 | 0.242 |
80 | 80 | 0.181 |
81 | 81 | 0.319 |
82 | 82 | 0.741 |
83 | 83 | 0.013 |
84 | 84 | 0.809 |
85 | 85 | 0.608 |
86 | 86 | 0.761 |
87 | 87 | 0.267 |
88 | 88 | 0.851 |
89 | 89 | 0.142 |
9 | 9 | 0.585 |
90 | 90 | 0.943 |
91 | 91 | 0.377 |
92 | 92 | 0.86 |
93 | 93 | 0.669 |
94 | 94 | 0.143 |
95 | 95 | 0.108 |
96 | 96 | 0.884 |
97 | 97 | 0.348 |
98 | 98 | 0.323 |
99 | 99 | 0.354 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12562
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000266 human mature adipocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000266 (human mature adipocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)