FFCP PHASE1:Mm9::chr3:36512292..36512319,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:36512292..36512319,-
|short_description=p1@Bbs7
|description=CAGE_peak_1_at_Bbs7_5end
|association_with_transcript=0bp_to_ENSMUST00000040148,ENSMUST0000012...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=71492 | |EntrezGene=71492 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=208 | |||
|TSSclassifier=NA | |||
|UniProt=Q8K2G4,D3YXR1 | |UniProt=Q8K2G4,D3YXR1 | ||
|association_with_transcript=0bp_to_ENSMUST00000040148,ENSMUST00000129671,ENSMUST00000142333,NM_027810,uc008ozp.2,uc008ozq.2,uc008ozr.1_5end | |||
|cluster_id=chr3:36512292..36512319,- | |||
|description=CAGE_peak_1_at_Bbs7_5end | |||
|id=chr3:36512292..36512319,- | |||
|ontology_enrichment_celltype=CL:0000055!8.01e-11!50;CL:0000393!1.32e-09!39;CL:0000211!1.32e-09!39;CL:0000221!6.40e-09!44;CL:0000133!6.40e-09!44;CL:0002319!6.73e-09!43;CL:0000540!4.31e-07!33;CL:0000047!4.31e-07!33;CL:0000031!4.31e-07!33;CL:0000404!4.31e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.29e-09,39;CL:0000211,1.29e-09,39;CL:0000221,6.28e-09,44;CL:0000133,6.28e-09,44;CL:0002319,6.61e-09,43;CL:0000540,4.25e-07,33;CL:0000047,4.25e-07,33;CL:0000031,4.25e-07,33;CL:0000404,4.25e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!4.30e-17!102;UBERON:0000924!4.30e-17!102;UBERON:0006601!4.30e-17!102;UBERON:0000073!1.99e-16!75;UBERON:0001016!1.99e-16!75;UBERON:0001017!2.82e-16!73;UBERON:0005743!2.82e-16!73;UBERON:0000025!6.32e-13!114;UBERON:0004111!3.80e-12!122;UBERON:0000033!1.12e-11!63;UBERON:0002346!1.36e-11!71;UBERON:0003075!1.36e-11!71;UBERON:0007284!1.36e-11!71;UBERON:0000955!1.61e-11!50;UBERON:0006238!1.61e-11!50;UBERON:0001049!1.72e-11!52;UBERON:0005068!1.72e-11!52;UBERON:0006241!1.72e-11!52;UBERON:0007135!1.72e-11!52;UBERON:0002616!4.99e-11!49;UBERON:0002020!2.42e-08!34;UBERON:0003056!2.03e-07!49;UBERON:0000468!3.87e-07!333;UBERON:0002791!6.99e-07!29;UBERON:0003528!6.99e-07!29;UBERON:0001893!6.99e-07!29;UBERON:0003080!9.72e-07!40 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.13e-17,95;UBERON:0000924,1.13e-17,95;UBERON:0006601,1.13e-17,95;UBERON:0001016,1.91e-16,75;UBERON:0001017,2.71e-16,73;UBERON:0000025,6.14e-13,114;UBERON:0000073,1.26e-12,54;UBERON:0010371,1.53e-12,73;UBERON:0002346,2.79e-12,64;UBERON:0003075,2.79e-12,64;UBERON:0007284,2.79e-12,64;UBERON:0004111,3.69e-12,122;UBERON:0001049,1.68e-11,52;UBERON:0005068,1.68e-11,52;UBERON:0006241,1.68e-11,52;UBERON:0007135,1.68e-11,52;UBERON:0010314,1.81e-11,92;UBERON:0000955,6.29e-10,47;UBERON:0006238,6.29e-10,47;UBERON:0002616,1.86e-09,46;UBERON:0002020,2.38e-08,34;UBERON:0003056,2.00e-07,49;UBERON:0000922,3.37e-07,320;UBERON:0003528,6.90e-07,29;UBERON:0002791,6.90e-07,29;UBERON:0001893,6.90e-07,29;UBERON:0003080,9.59e-07,40 | |||
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| ||
|short_description=p1@Bbs7 | |||
}} | }} |
Latest revision as of 23:36, 1 October 2015
Short description: | p1@Bbs7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Bbs7_5end |
Coexpression cluster: | MCL_coexpression_mm9:208 |
Association with transcript: | 0bp_to_ENSMUST00000040148, ENSMUST00000129671, ENSMUST00000142333, NM_027810, uc008ozp.2, uc008ozq.2, uc008ozr.1_5end |
EntrezGene: | Bbs7 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.29e-09 | 39 |
electrically active cell | 1.29e-09 | 39 |
ectodermal cell | 6.28e-09 | 44 |
neurectodermal cell | 6.28e-09 | 44 |
neural cell | 6.61e-09 | 43 |
neuron | 4.25e-07 | 33 |
neuronal stem cell | 4.25e-07 | 33 |
neuroblast | 4.25e-07 | 33 |
electrically signaling cell | 4.25e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.13e-17 | 95 |
ectoderm | 1.13e-17 | 95 |
presumptive ectoderm | 1.13e-17 | 95 |
nervous system | 1.91e-16 | 75 |
central nervous system | 2.71e-16 | 73 |
tube | 6.14e-13 | 114 |
regional part of nervous system | 1.26e-12 | 54 |
ecto-epithelium | 1.53e-12 | 73 |
neurectoderm | 2.79e-12 | 64 |
neural plate | 2.79e-12 | 64 |
presumptive neural plate | 2.79e-12 | 64 |
anatomical conduit | 3.69e-12 | 122 |
neural tube | 1.68e-11 | 52 |
neural rod | 1.68e-11 | 52 |
future spinal cord | 1.68e-11 | 52 |
neural keel | 1.68e-11 | 52 |
structure with developmental contribution from neural crest | 1.81e-11 | 92 |
brain | 6.29e-10 | 47 |
future brain | 6.29e-10 | 47 |
regional part of brain | 1.86e-09 | 46 |
gray matter | 2.38e-08 | 34 |
pre-chordal neural plate | 2.00e-07 | 49 |
embryo | 3.37e-07 | 320 |
brain grey matter | 6.90e-07 | 29 |
regional part of telencephalon | 6.90e-07 | 29 |
telencephalon | 6.90e-07 | 29 |
anterior neural tube | 9.59e-07 | 40 |