FFCP PHASE1:Mm9::chr6:83115914..83115971,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:83115914..83115971,+
|short_description=p1@Dctn1
|description=CAGE_peak_1_at_Dctn1_5end
|association_with_transcript=0bp_to_ENSMUST00000077407,ENSMUST00000...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=13191 | |EntrezGene=13191 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1038 | |||
|TSSclassifier=NA | |||
|UniProt=E9Q586,E9Q3M3,Q6NZM3,Q3T9V8 | |UniProt=E9Q586,E9Q3M3,Q6NZM3,Q3T9V8 | ||
|association_with_transcript=0bp_to_ENSMUST00000077407,ENSMUST00000113913,NM_001198866,NM_001198867,uc009cmz.2,uc009cna.2_5end | |||
|cluster_id=chr6:83115914..83115971,+ | |||
|description=CAGE_peak_1_at_Dctn1_5end | |||
|id=chr6:83115914..83115971,+ | |||
|ontology_enrichment_celltype=CL:0002319!4.27e-15!43;CL:0000221!4.34e-15!44;CL:0000133!4.34e-15!44;CL:0000055!3.79e-12!50;CL:0000540!1.49e-10!33;CL:0000047!1.49e-10!33;CL:0000031!1.49e-10!33;CL:0000404!1.49e-10!33;CL:0002321!2.49e-10!70;CL:0000220!2.49e-10!70;CL:0000117!5.64e-10!23;CL:0000337!5.64e-10!23;CL:0000393!1.47e-08!39;CL:0000211!1.47e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,4.27e-15,43;CL:0000221,4.34e-15,44;CL:0000133,4.34e-15,44;CL:0000540,1.49e-10,33;CL:0000047,1.49e-10,33;CL:0000031,1.49e-10,33;CL:0000404,1.49e-10,33;CL:0002321,2.49e-10,70;CL:0000117,5.64e-10,23;CL:0000337,5.64e-10,23;CL:0000393,1.47e-08,39;CL:0000211,1.47e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.41e-16!75;UBERON:0001016!2.41e-16!75;UBERON:0001017!5.47e-16!73;UBERON:0005743!5.47e-16!73;UBERON:0004121!2.75e-12!102;UBERON:0000924!2.75e-12!102;UBERON:0006601!2.75e-12!102;UBERON:0001049!4.46e-11!52;UBERON:0005068!4.46e-11!52;UBERON:0006241!4.46e-11!52;UBERON:0007135!4.46e-11!52;UBERON:0002616!1.05e-10!49;UBERON:0000955!1.56e-10!50;UBERON:0006238!1.56e-10!50;UBERON:0000033!1.84e-09!63;UBERON:0002020!2.54e-09!34;UBERON:0002346!2.98e-09!71;UBERON:0003075!2.98e-09!71;UBERON:0007284!2.98e-09!71;UBERON:0002780!8.50e-09!39;UBERON:0001890!8.50e-09!39;UBERON:0006240!8.50e-09!39;UBERON:0003080!1.49e-08!40;UBERON:0002791!2.29e-08!29;UBERON:0003528!2.29e-08!29;UBERON:0001893!2.29e-08!29;UBERON:0003056!1.94e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.41e-16,75;UBERON:0001017,5.47e-16,73;UBERON:0004121,8.51e-13,95;UBERON:0000924,8.51e-13,95;UBERON:0006601,8.51e-13,95;UBERON:0010314,3.39e-12,92;UBERON:0000073,9.18e-12,54;UBERON:0001049,4.46e-11,52;UBERON:0005068,4.46e-11,52;UBERON:0006241,4.46e-11,52;UBERON:0007135,4.46e-11,52;UBERON:0002616,3.09e-10,46;UBERON:0000955,4.63e-10,47;UBERON:0006238,4.63e-10,47;UBERON:0002346,6.70e-10,64;UBERON:0003075,6.70e-10,64;UBERON:0007284,6.70e-10,64;UBERON:0002020,2.54e-09,34;UBERON:0002780,8.50e-09,39;UBERON:0001890,8.50e-09,39;UBERON:0006240,8.50e-09,39;UBERON:0003080,1.49e-08,40;UBERON:0003528,2.29e-08,29;UBERON:0002791,2.29e-08,29;UBERON:0001893,2.29e-08,29;UBERON:0010371,8.74e-08,73;UBERON:0003056,1.94e-07,49 | |||
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| ||
|short_description=p1@Dctn1 | |||
}} | }} |
Latest revision as of 19:01, 1 October 2015
Short description: | p1@Dctn1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dctn1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1038 |
Association with transcript: | 0bp_to_ENSMUST00000077407, ENSMUST00000113913, NM_001198866, NM_001198867, uc009cmz.2, uc009cna.2_5end |
EntrezGene: | Dctn1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 4.27e-15 | 43 |
ectodermal cell | 4.34e-15 | 44 |
neurectodermal cell | 4.34e-15 | 44 |
neuron | 1.49e-10 | 33 |
neuronal stem cell | 1.49e-10 | 33 |
neuroblast | 1.49e-10 | 33 |
electrically signaling cell | 1.49e-10 | 33 |
embryonic cell | 2.49e-10 | 70 |
CNS neuron (sensu Vertebrata) | 5.64e-10 | 23 |
neuroblast (sensu Vertebrata) | 5.64e-10 | 23 |
electrically responsive cell | 1.47e-08 | 39 |
electrically active cell | 1.47e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.41e-16 | 75 |
central nervous system | 5.47e-16 | 73 |
ectoderm-derived structure | 8.51e-13 | 95 |
ectoderm | 8.51e-13 | 95 |
presumptive ectoderm | 8.51e-13 | 95 |
structure with developmental contribution from neural crest | 3.39e-12 | 92 |
regional part of nervous system | 9.18e-12 | 54 |
neural tube | 4.46e-11 | 52 |
neural rod | 4.46e-11 | 52 |
future spinal cord | 4.46e-11 | 52 |
neural keel | 4.46e-11 | 52 |
regional part of brain | 3.09e-10 | 46 |
brain | 4.63e-10 | 47 |
future brain | 4.63e-10 | 47 |
neurectoderm | 6.70e-10 | 64 |
neural plate | 6.70e-10 | 64 |
presumptive neural plate | 6.70e-10 | 64 |
gray matter | 2.54e-09 | 34 |
regional part of forebrain | 8.50e-09 | 39 |
forebrain | 8.50e-09 | 39 |
future forebrain | 8.50e-09 | 39 |
anterior neural tube | 1.49e-08 | 40 |
brain grey matter | 2.29e-08 | 29 |
regional part of telencephalon | 2.29e-08 | 29 |
telencephalon | 2.29e-08 | 29 |
ecto-epithelium | 8.74e-08 | 73 |
pre-chordal neural plate | 1.94e-07 | 49 |