FFCP PHASE1:Mm9::chrX:140367687..140367694,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:140367687..140367694,-
|short_description=p3@Dcx
|description=CAGE_peak_3_at_Dcx_5end
|association_with_transcript=-20bp_to_ENSMUST00000087313,NM_001110222...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=13193 | |EntrezGene=13193 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=O88809,Q6E5A4,Q6PGI2,Q8C852,Q3V349 | |UniProt=O88809,Q6E5A4,Q6PGI2,Q8C852,Q3V349 | ||
|association_with_transcript=-20bp_to_ENSMUST00000087313,NM_001110222,uc009umo.2,uc009ump.2,uc009umq.2_5end | |||
|cluster_id=chrX:140367687..140367694,- | |||
|description=CAGE_peak_3_at_Dcx_5end | |||
|id=chrX:140367687..140367694,- | |||
|ontology_enrichment_celltype=CL:0000117!4.19e-14!23;CL:0000337!4.19e-14!23;CL:0000540!8.87e-14!33;CL:0000047!8.87e-14!33;CL:0000031!8.87e-14!33;CL:0000404!8.87e-14!33;CL:0000393!5.88e-10!39;CL:0000211!5.88e-10!39;CL:0000221!8.15e-09!44;CL:0000133!8.15e-09!44;CL:0002319!1.01e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.77e-17,23;CL:0000337,3.77e-17,23;CL:0000540,1.88e-10,33;CL:0000047,1.88e-10,33;CL:0000031,1.88e-10,33;CL:0000404,1.88e-10,33;CL:0000393,3.97e-08,39;CL:0000211,3.97e-08,39;CL:0002319,5.88e-07,43;CL:0002609,9.25e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.53e-20!73;UBERON:0005743!3.53e-20!73;UBERON:0000073!4.67e-19!75;UBERON:0001016!4.67e-19!75;UBERON:0002346!1.98e-17!71;UBERON:0003075!1.98e-17!71;UBERON:0007284!1.98e-17!71;UBERON:0001049!7.43e-17!52;UBERON:0005068!7.43e-17!52;UBERON:0006241!7.43e-17!52;UBERON:0007135!7.43e-17!52;UBERON:0002020!7.14e-16!34;UBERON:0000033!1.36e-15!63;UBERON:0000955!1.56e-15!50;UBERON:0006238!1.56e-15!50;UBERON:0003056!1.80e-15!49;UBERON:0004121!3.01e-15!102;UBERON:0000924!3.01e-15!102;UBERON:0006601!3.01e-15!102;UBERON:0002616!9.00e-15!49;UBERON:0003080!9.72e-15!40;UBERON:0002780!3.51e-14!39;UBERON:0001890!3.51e-14!39;UBERON:0006240!3.51e-14!39;UBERON:0002791!3.10e-12!29;UBERON:0003528!3.10e-12!29;UBERON:0001893!3.10e-12!29;UBERON:0000956!7.11e-09!21;UBERON:0001869!7.11e-09!21;UBERON:0000203!7.11e-09!21;UBERON:0000153!2.57e-08!94;UBERON:0007811!1.74e-07!86;UBERON:0002619!6.01e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,6.08e-16,34;UBERON:0000073,1.44e-11,54;UBERON:0001049,3.05e-11,52;UBERON:0005068,3.05e-11,52;UBERON:0006241,3.05e-11,52;UBERON:0007135,3.05e-11,52;UBERON:0001017,9.15e-11,73;UBERON:0003528,1.51e-10,29;UBERON:0002791,1.51e-10,29;UBERON:0001893,1.51e-10,29;UBERON:0002346,1.51e-10,64;UBERON:0003075,1.51e-10,64;UBERON:0007284,1.51e-10,64;UBERON:0001016,2.88e-10,75;UBERON:0003056,2.08e-09,49;UBERON:0003080,2.54e-09,40;UBERON:0002780,1.28e-08,39;UBERON:0001890,1.28e-08,39;UBERON:0006240,1.28e-08,39;UBERON:0004121,1.59e-08,95;UBERON:0000924,1.59e-08,95;UBERON:0006601,1.59e-08,95;UBERON:0010371,2.26e-08,73;UBERON:0000955,2.70e-08,47;UBERON:0006238,2.70e-08,47;UBERON:0001948,3.79e-08,5;UBERON:0002315,3.79e-08,5;UBERON:0000956,4.16e-08,21;UBERON:0001869,4.16e-08,21;UBERON:0000203,4.16e-08,21;UBERON:0002616,1.83e-07,46;UBERON:0002619,3.24e-07,17 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.04632921719196,4.23192783417626,3.1691570175309,0,0,0,0,0,0.299600110518405,0,2.17748185847803,0.945041568321835,1.89292465216244,1.14260393761521,1.32521124570968,3.42974237801871,2.97120960156533,1.83843757322004,1.10115880999389,0.127687338085188,0.307213066512487,3.82470234417562,6.03818447775904,5.2091337055676,0,0.56276261003168,0.45839474333043,5.30331453852602,9.39653093274079,7.82877672466262,0,0,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0.867426633830679,0,0,0.150722640552623,0.823120949949934,0,0,0,0,0,0,0,0,0,0.83778682725382,0,0,0,0,1.3481157546434,0.915001205637253,7.03664371832041,0.347648640384553,0,0.62336413367868,0.486723789203273,0,0,0,0,0.520481771850815,0,1.0803727788321,0.452114453507145,0.95251098811859,1.7935920839879,1.12442069471675,0,0.431135985865684,0.189106080167819,0.879755620819744,0.657587197282725,0.278047249225598,0.348252166522167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,4.11618449517138,0,0,0,0.232236671860439,0.257734922644187,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0,0.342745537829186,0,0,0.193952487167626,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274561413188081,0,0,0,0,0,0,0,0.947457058852424,0.162964976442026,0,0,0,0.238043640886014,0,0.157635144106191,0.221464689648775,0.159454768657487,0,0,0,0,0,0,0,0.963303539926752,0.703270119553219,0,0,0.631016438832513,0.780877488593277,0.215423397732799,0,0.222798674082394,0.283076530788832,0,0.584511715822624,0.395287777946524,3.85585579706168,0,0,0,0,0,0.728341908464944,0,0.188605079755898,0,0,0,0.363533729477506,1.06949213515416,0,0,0,0.680879211507576,0.36012218806262,0.129358683782755,0.214337035031592,1.24138163549592,1.07021290561242,0.822745103010605,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0.206386867963223,0,0,0,0,0,0,0,0,0.316335993581135,0,0.324016022465404,0.209088296014469,0,0.269728692769641,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,0.920650473014354,1.14579102687879,1.71853182343688,2.74033007908257,0.755393897389701,1.35004500046361,1.80128481289688,0,0.51776031175182,0.93408612825759,1.99512436700516,2.04880326904961,0.486213434136588,2.09613162627982,1.10306105070008,1.55572709461131,0.824140228955577,2.56735367673452,2.27427490587418,1.01391719956096,1.32038438970253,1.96647165686753,1.92075457214608,1.60819313075717,2.38146845641537,1.62238056322798,1.54327376370964,0.412085900803307,1.61918812147837,2.40008476669791,1.06485483695602,1.1921809497366,1.74415699958794,1.59985946706062,1.69229215783353,1.64635175585495,2.63069711437843,1.49384525230448,2.80571135828869,1.54225523561426,0.985044823755635,2.04615521584845,0.77468420592983,1.54325288784913,1.49886346762768,0.935726433781634,0.644613162144895,0.956441660344217,0.220591419119515,0.231867835620421 | |phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.04632921719196,4.23192783417626,3.1691570175309,0,0,0,0,0,0.299600110518405,0,2.17748185847803,0.945041568321835,1.89292465216244,1.14260393761521,1.32521124570968,3.42974237801871,2.97120960156533,1.83843757322004,1.10115880999389,0.127687338085188,0.307213066512487,3.82470234417562,6.03818447775904,5.2091337055676,0,0.56276261003168,0.45839474333043,5.30331453852602,9.39653093274079,7.82877672466262,0,0,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0.867426633830679,0,0,0.150722640552623,0.823120949949934,0,0,0,0,0,0,0,0,0,0.83778682725382,0,0,0,0,1.3481157546434,0.915001205637253,7.03664371832041,0.347648640384553,0,0.62336413367868,0.486723789203273,0,0,0,0,0.520481771850815,0,1.0803727788321,0.452114453507145,0.95251098811859,1.7935920839879,1.12442069471675,0,0.431135985865684,0.189106080167819,0.879755620819744,0.657587197282725,0.278047249225598,0.348252166522167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,4.11618449517138,0,0,0,0.232236671860439,0.257734922644187,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0,0.342745537829186,0,0,0.193952487167626,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274561413188081,0,0,0,0,0,0,0,0.947457058852424,0.162964976442026,0,0,0,0.238043640886014,0,0.157635144106191,0.221464689648775,0.159454768657487,0,0,0,0,0,0,0,0.963303539926752,0.703270119553219,0,0,0.631016438832513,0.780877488593277,0.215423397732799,0,0.222798674082394,0.283076530788832,0,0.584511715822624,0.395287777946524,3.85585579706168,0,0,0,0,0,0.728341908464944,0,0.188605079755898,0,0,0,0.363533729477506,1.06949213515416,0,0,0,0.680879211507576,0.36012218806262,0.129358683782755,0.214337035031592,1.24138163549592,1.07021290561242,0.822745103010605,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0.206386867963223,0,0,0,0,0,0,0,0,0.316335993581135,0,0.324016022465404,0.209088296014469,0,0.269728692769641,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,0.920650473014354,1.14579102687879,1.71853182343688,2.74033007908257,0.755393897389701,1.35004500046361,1.80128481289688,0,0.51776031175182,0.93408612825759,1.99512436700516,2.04880326904961,0.486213434136588,2.09613162627982,1.10306105070008,1.55572709461131,0.824140228955577,2.56735367673452,2.27427490587418,1.01391719956096,1.32038438970253,1.96647165686753,1.92075457214608,1.60819313075717,2.38146845641537,1.62238056322798,1.54327376370964,0.412085900803307,1.61918812147837,2.40008476669791,1.06485483695602,1.1921809497366,1.74415699958794,1.59985946706062,1.69229215783353,1.64635175585495,2.63069711437843,1.49384525230448,2.80571135828869,1.54225523561426,0.985044823755635,2.04615521584845,0.77468420592983,1.54325288784913,1.49886346762768,0.935726433781634,0.644613162144895,0.956441660344217,0.220591419119515,0.231867835620421 | ||
|short_description=p3@Dcx | |||
}} | }} |
Latest revision as of 16:09, 1 October 2015
Short description: | p3@Dcx |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Dcx_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -20bp_to_ENSMUST00000087313, NM_001110222, uc009umo.2, uc009ump.2, uc009umq.2_5end |
EntrezGene: | Dcx |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.77e-17 | 23 |
neuroblast (sensu Vertebrata) | 3.77e-17 | 23 |
neuron | 1.88e-10 | 33 |
neuronal stem cell | 1.88e-10 | 33 |
neuroblast | 1.88e-10 | 33 |
electrically signaling cell | 1.88e-10 | 33 |
electrically responsive cell | 3.97e-08 | 39 |
electrically active cell | 3.97e-08 | 39 |
neural cell | 5.88e-07 | 43 |
neuron of cerebral cortex | 9.25e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
gray matter | 6.08e-16 | 34 |
regional part of nervous system | 1.44e-11 | 54 |
neural tube | 3.05e-11 | 52 |
neural rod | 3.05e-11 | 52 |
future spinal cord | 3.05e-11 | 52 |
neural keel | 3.05e-11 | 52 |
central nervous system | 9.15e-11 | 73 |
brain grey matter | 1.51e-10 | 29 |
regional part of telencephalon | 1.51e-10 | 29 |
telencephalon | 1.51e-10 | 29 |
neurectoderm | 1.51e-10 | 64 |
neural plate | 1.51e-10 | 64 |
presumptive neural plate | 1.51e-10 | 64 |
nervous system | 2.88e-10 | 75 |
pre-chordal neural plate | 2.08e-09 | 49 |
anterior neural tube | 2.54e-09 | 40 |
regional part of forebrain | 1.28e-08 | 39 |
forebrain | 1.28e-08 | 39 |
future forebrain | 1.28e-08 | 39 |
ectoderm-derived structure | 1.59e-08 | 95 |
ectoderm | 1.59e-08 | 95 |
presumptive ectoderm | 1.59e-08 | 95 |
ecto-epithelium | 2.26e-08 | 73 |
brain | 2.70e-08 | 47 |
future brain | 2.70e-08 | 47 |
regional part of spinal cord | 3.79e-08 | 5 |
gray matter of spinal cord | 3.79e-08 | 5 |
cerebral cortex | 4.16e-08 | 21 |
cerebral hemisphere | 4.16e-08 | 21 |
pallium | 4.16e-08 | 21 |
regional part of brain | 1.83e-07 | 46 |
regional part of cerebral cortex | 3.24e-07 | 17 |