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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005703
|DRA_sample_Accession=CAGE@SAMD00005703
|accession_numbers=CAGE;DRX008175;DRR009047;DRZ000472;DRZ001857!CAGE;DRX022801;DRR025140;DRZ003565;DRZ004448
|accession_numbers=CAGE;DRX008175;DRR009047;DRZ000472;DRZ001857;DRZ011822;DRZ013207!CAGE;DRX022801;DRR025140;DRZ003565;DRZ004448;DRZ008306;DRZ009189
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000034
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000034
Line 49: Line 49:
|is_a=EFO:0002091;;FF:0000026
|is_a=EFO:0002091;;FF:0000026
|is_obsolete=
|is_obsolete=
|library_id=CNhs12553
|library_id=CNhs12588!CNhs12553
|library_id_phase_based=2:CNhs12553
|library_id_phase_based=2:CNhs12553
|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;12225
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12225
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;12225
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12225
|name=CD34+ stem cells - adult bone marrow derived, donor1
|name=CD34+ stem cells - adult bone marrow derived, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 62: Line 62:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 100: Line 100:
|top_motifs=GATA6:2.27712496324;MYB:2.26122923227;E2F1..5:1.73829194726;ALX1:1.63545220319;POU2F1..3:1.55027386693;ELF1,2,4:1.47134997852;DMAP1_NCOR{1,2}_SMARC:1.2371981594;FOX{I1,J2}:1.18090026922;PBX1:1.17513699817;SPIB:1.13879415937;STAT1,3:1.12532873695;TLX2:1.11080348018;YY1:1.05432857063;NFY{A,B,C}:1.03799480185;NANOG:0.95758896826;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.950322943624;BREu{core}:0.941146298835;ELK1,4_GABP{A,B1}:0.937976777848;RUNX1..3:0.893789039383;NANOG{mouse}:0.80132385514;RFX2..5_RFXANK_RFXAP:0.767055234055;ZNF143:0.724678355373;FOXP3:0.675468925188;CDX1,2,4:0.652613303476;HAND1,2:0.652048306981;ETS1,2:0.630117413345;SPI1:0.624564853209;NR6A1:0.613635897869;OCT4_SOX2{dimer}:0.610144652133;NFIL3:0.605437278274;PAX4:0.580607735411;HIF1A:0.537801025312;ARID5B:0.517237005518;NR5A1,2:0.504927057388;NRF1:0.489582768629;FOXA2:0.482544754882;PAX6:0.466066515278;RFX1:0.462260582359;NKX6-1,2:0.459426623199;AIRE:0.457581130791;IRF1,2:0.448553785811;POU1F1:0.391519091378;CREB1:0.368707031713;FOXN1:0.35731482802;FOXP1:0.350034968328;CUX2:0.341134603502;STAT5{A,B}:0.333374555284;NKX2-3_NKX2-5:0.290640915861;GFI1:0.27290496278;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.256502044182;PITX1..3:0.232737391295;POU3F1..4:0.228112628384;POU5F1:0.202629627949;SOX{8,9,10}:0.179756290472;MYBL2:0.161015790752;IKZF2:0.154537567398;RBPJ:0.154313466002;ATF5_CREB3:0.137346784085;HBP1_HMGB_SSRP1_UBTF:0.131895728065;bHLH_family:0.119466785309;SOX2:0.0887175245848;MEF2{A,B,C,D}:0.0586054739266;ZEB1:0.0482884414247;HOXA9_MEIS1:0.0463671304453;PAX2:0.0460930897741;TGIF1:0.0250643526175;LEF1_TCF7_TCF7L1,2:0.019498197212;NKX2-1,4:0.00426251822354;T:0.00154553509912;PRRX1,2:-0.0148348496976;DBP:-0.031712711575;NKX2-2,8:-0.0450243892993;XBP1:-0.0451063248141;TBP:-0.0460253109525;ATF4:-0.0474328931396;IRF7:-0.0553817110415;RXR{A,B,G}:-0.0608509631331;AR:-0.0683286616311;GCM1,2:-0.0932128050317;PAX8:-0.110465902864;SOX5:-0.128284559188;SNAI1..3:-0.132469623991;HES1:-0.1343480452;NFKB1_REL_RELA:-0.137054703705;NKX3-1:-0.14825464683;MYOD1:-0.150224122148;CRX:-0.163995035682;FOX{D1,D2}:-0.192517763345;FOX{F1,F2,J1}:-0.246068340614;FOXO1,3,4:-0.247254379152;NHLH1,2:-0.263385469361;TOPORS:-0.275485845335;TEF:-0.282875921865;SREBF1,2:-0.287416355462;HNF4A_NR2F1,2:-0.321623681552;RORA:-0.32579497227;LMO2:-0.357595785846;HNF1A:-0.358594976605;EVI1:-0.378259497775;PAX5:-0.378722018785;ZNF148:-0.381538083382;PDX1:-0.391112729354;VSX1,2:-0.406271538956;BPTF:-0.410498711983;REST:-0.421147008059;ZBTB16:-0.452988650336;GZF1:-0.456992130011;MYFfamily:-0.462512914488;CEBPA,B_DDIT3:-0.466613982096;FOXQ1:-0.467982188518;ESRRA:-0.480480836816;TFAP4:-0.497060657327;ESR1:-0.515836042577;PPARG:-0.523218187114;ZFP161:-0.532357683392;NFE2:-0.554681663998;HOX{A4,D4}:-0.558053333798;RXRA_VDR{dimer}:-0.570359577068;ATF2:-0.597941624905;SOX17:-0.604129041225;LHX3,4:-0.610493019701;EP300:-0.619368796825;FOSL2:-0.621773868458;ZNF238:-0.626048724805;NFATC1..3:-0.627909068766;SRF:-0.662477506993;TAL1_TCF{3,4,12}:-0.67551868362;AHR_ARNT_ARNT2:-0.68259884558;HLF:-0.684102453854;MZF1:-0.685237535681;PAX3,7:-0.685430534812;HIC1:-0.685532316105;FOS_FOS{B,L1}_JUN{B,D}:-0.688238034193;FOXD3:-0.691687721283;HSF1,2:-0.696307090937;MTF1:-0.70436609148;BACH2:-0.726099421144;TFDP1:-0.738387580784;HOX{A5,B5}:-0.770611593107;EBF1:-0.773836780079;MAFB:-0.774894839474;HMX1:-0.780294032583;EN1,2:-0.810562574538;POU6F1:-0.81278724361;FOXL1:-0.830211325771;PRDM1:-0.857430691612;STAT2,4,6:-0.862081840918;JUN:-0.865234980011;TBX4,5:-0.8652870814;HOX{A6,A7,B6,B7}:-0.873741117235;TFAP2B:-0.888409960862;NFE2L2:-0.894134440867;MTE{core}:-0.897245464494;ZNF423:-0.931697602811;PATZ1:-0.937108415271;GLI1..3:-0.942535222437;ADNP_IRX_SIX_ZHX:-0.95708530842;ALX4:-0.957182245539;SP1:-0.963133759366;ONECUT1,2:-0.973299876775;GTF2I:-0.979099146363;KLF4:-0.983070574105;GATA4:-0.984377273291;SMAD1..7,9:-0.993246500611;TFAP2{A,C}:-0.997040948333;XCPE1{core}:-1.03413298737;MAZ:-1.03469485342;ZBTB6:-1.06075434236;TLX1..3_NFIC{dimer}:-1.06599841845;FOXM1:-1.07260994374;EGR1..3:-1.08183954457;NFE2L1:-1.10588159291;TP53:-1.14089530894;NFIX:-1.15601605887;MED-1{core}:-1.18254562541;GTF2A1,2:-1.18639551775;UFEwm:-1.1933827259;CDC5L:-1.23009931138;ZIC1..3:-1.25578228712;TEAD1:-1.26049646998;ATF6:-1.26134494367;IKZF1:-1.26695610954;PAX1,9:-1.30393888873;ZNF384:-1.33468604414;GFI1B:-1.39677622162;NKX3-2:-1.41457867517;HMGA1,2:-1.41824991798;NR1H4:-1.48874136042;RREB1:-1.50109665083;TFCP2:-1.83282749254;SPZ1:-1.83589339203;NR3C1:-1.8624468977
|top_motifs=GATA6:2.27712496324;MYB:2.26122923227;E2F1..5:1.73829194726;ALX1:1.63545220319;POU2F1..3:1.55027386693;ELF1,2,4:1.47134997852;DMAP1_NCOR{1,2}_SMARC:1.2371981594;FOX{I1,J2}:1.18090026922;PBX1:1.17513699817;SPIB:1.13879415937;STAT1,3:1.12532873695;TLX2:1.11080348018;YY1:1.05432857063;NFY{A,B,C}:1.03799480185;NANOG:0.95758896826;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.950322943624;BREu{core}:0.941146298835;ELK1,4_GABP{A,B1}:0.937976777848;RUNX1..3:0.893789039383;NANOG{mouse}:0.80132385514;RFX2..5_RFXANK_RFXAP:0.767055234055;ZNF143:0.724678355373;FOXP3:0.675468925188;CDX1,2,4:0.652613303476;HAND1,2:0.652048306981;ETS1,2:0.630117413345;SPI1:0.624564853209;NR6A1:0.613635897869;OCT4_SOX2{dimer}:0.610144652133;NFIL3:0.605437278274;PAX4:0.580607735411;HIF1A:0.537801025312;ARID5B:0.517237005518;NR5A1,2:0.504927057388;NRF1:0.489582768629;FOXA2:0.482544754882;PAX6:0.466066515278;RFX1:0.462260582359;NKX6-1,2:0.459426623199;AIRE:0.457581130791;IRF1,2:0.448553785811;POU1F1:0.391519091378;CREB1:0.368707031713;FOXN1:0.35731482802;FOXP1:0.350034968328;CUX2:0.341134603502;STAT5{A,B}:0.333374555284;NKX2-3_NKX2-5:0.290640915861;GFI1:0.27290496278;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.256502044182;PITX1..3:0.232737391295;POU3F1..4:0.228112628384;POU5F1:0.202629627949;SOX{8,9,10}:0.179756290472;MYBL2:0.161015790752;IKZF2:0.154537567398;RBPJ:0.154313466002;ATF5_CREB3:0.137346784085;HBP1_HMGB_SSRP1_UBTF:0.131895728065;bHLH_family:0.119466785309;SOX2:0.0887175245848;MEF2{A,B,C,D}:0.0586054739266;ZEB1:0.0482884414247;HOXA9_MEIS1:0.0463671304453;PAX2:0.0460930897741;TGIF1:0.0250643526175;LEF1_TCF7_TCF7L1,2:0.019498197212;NKX2-1,4:0.00426251822354;T:0.00154553509912;PRRX1,2:-0.0148348496976;DBP:-0.031712711575;NKX2-2,8:-0.0450243892993;XBP1:-0.0451063248141;TBP:-0.0460253109525;ATF4:-0.0474328931396;IRF7:-0.0553817110415;RXR{A,B,G}:-0.0608509631331;AR:-0.0683286616311;GCM1,2:-0.0932128050317;PAX8:-0.110465902864;SOX5:-0.128284559188;SNAI1..3:-0.132469623991;HES1:-0.1343480452;NFKB1_REL_RELA:-0.137054703705;NKX3-1:-0.14825464683;MYOD1:-0.150224122148;CRX:-0.163995035682;FOX{D1,D2}:-0.192517763345;FOX{F1,F2,J1}:-0.246068340614;FOXO1,3,4:-0.247254379152;NHLH1,2:-0.263385469361;TOPORS:-0.275485845335;TEF:-0.282875921865;SREBF1,2:-0.287416355462;HNF4A_NR2F1,2:-0.321623681552;RORA:-0.32579497227;LMO2:-0.357595785846;HNF1A:-0.358594976605;EVI1:-0.378259497775;PAX5:-0.378722018785;ZNF148:-0.381538083382;PDX1:-0.391112729354;VSX1,2:-0.406271538956;BPTF:-0.410498711983;REST:-0.421147008059;ZBTB16:-0.452988650336;GZF1:-0.456992130011;MYFfamily:-0.462512914488;CEBPA,B_DDIT3:-0.466613982096;FOXQ1:-0.467982188518;ESRRA:-0.480480836816;TFAP4:-0.497060657327;ESR1:-0.515836042577;PPARG:-0.523218187114;ZFP161:-0.532357683392;NFE2:-0.554681663998;HOX{A4,D4}:-0.558053333798;RXRA_VDR{dimer}:-0.570359577068;ATF2:-0.597941624905;SOX17:-0.604129041225;LHX3,4:-0.610493019701;EP300:-0.619368796825;FOSL2:-0.621773868458;ZNF238:-0.626048724805;NFATC1..3:-0.627909068766;SRF:-0.662477506993;TAL1_TCF{3,4,12}:-0.67551868362;AHR_ARNT_ARNT2:-0.68259884558;HLF:-0.684102453854;MZF1:-0.685237535681;PAX3,7:-0.685430534812;HIC1:-0.685532316105;FOS_FOS{B,L1}_JUN{B,D}:-0.688238034193;FOXD3:-0.691687721283;HSF1,2:-0.696307090937;MTF1:-0.70436609148;BACH2:-0.726099421144;TFDP1:-0.738387580784;HOX{A5,B5}:-0.770611593107;EBF1:-0.773836780079;MAFB:-0.774894839474;HMX1:-0.780294032583;EN1,2:-0.810562574538;POU6F1:-0.81278724361;FOXL1:-0.830211325771;PRDM1:-0.857430691612;STAT2,4,6:-0.862081840918;JUN:-0.865234980011;TBX4,5:-0.8652870814;HOX{A6,A7,B6,B7}:-0.873741117235;TFAP2B:-0.888409960862;NFE2L2:-0.894134440867;MTE{core}:-0.897245464494;ZNF423:-0.931697602811;PATZ1:-0.937108415271;GLI1..3:-0.942535222437;ADNP_IRX_SIX_ZHX:-0.95708530842;ALX4:-0.957182245539;SP1:-0.963133759366;ONECUT1,2:-0.973299876775;GTF2I:-0.979099146363;KLF4:-0.983070574105;GATA4:-0.984377273291;SMAD1..7,9:-0.993246500611;TFAP2{A,C}:-0.997040948333;XCPE1{core}:-1.03413298737;MAZ:-1.03469485342;ZBTB6:-1.06075434236;TLX1..3_NFIC{dimer}:-1.06599841845;FOXM1:-1.07260994374;EGR1..3:-1.08183954457;NFE2L1:-1.10588159291;TP53:-1.14089530894;NFIX:-1.15601605887;MED-1{core}:-1.18254562541;GTF2A1,2:-1.18639551775;UFEwm:-1.1933827259;CDC5L:-1.23009931138;ZIC1..3:-1.25578228712;TEAD1:-1.26049646998;ATF6:-1.26134494367;IKZF1:-1.26695610954;PAX1,9:-1.30393888873;ZNF384:-1.33468604414;GFI1B:-1.39677622162;NKX3-2:-1.41457867517;HMGA1,2:-1.41824991798;NR1H4:-1.48874136042;RREB1:-1.50109665083;TFCP2:-1.83282749254;SPZ1:-1.83589339203;NR3C1:-1.8624468977
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12225-129F2;search_select_hide=table117:FF:12225-129F2
}}
}}

Latest revision as of 18:35, 4 June 2020

Name:CD34+ stem cells - adult bone marrow derived, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12588,CNhs12553
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone marrow
dev stageNA
sexNA
ageNA
cell typestem cell
cell lineNA
companyStem cell technologies
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005703
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12588 CAGE DRX008175 DRR009047
CNhs12553 CAGE DRX022801 DRR025140
Accession ID Hg19

Library idBAMCTSS
CNhs12588 DRZ000472 DRZ001857
CNhs12553 DRZ003565 DRZ004448
Accession ID Hg38

Library idBAMCTSS
CNhs12588 DRZ011822 DRZ013207
CNhs12553 DRZ008306 DRZ009189
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
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C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



No results for this sample



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12588

Jaspar motifP-value
MA0002.20.0194
MA0003.10.525
MA0004.10.215
MA0006.10.463
MA0007.10.968
MA0009.10.599
MA0014.10.606
MA0017.10.196
MA0018.20.721
MA0019.10.0273
MA0024.14.04704e-10
MA0025.10.0757
MA0027.10.131
MA0028.17.78227e-8
MA0029.10.757
MA0030.10.52
MA0031.10.832
MA0035.22.12003e-5
MA0038.10.232
MA0039.20.858
MA0040.10.325
MA0041.10.53
MA0042.10.596
MA0043.10.0302
MA0046.10.702
MA0047.20.237
MA0048.10.402
MA0050.11.49998e-4
MA0051.18.89644e-4
MA0052.10.27
MA0055.10.126
MA0057.10.767
MA0058.10.132
MA0059.10.00566
MA0060.11.14086e-4
MA0061.10.672
MA0062.21.79113e-14
MA0065.20.1
MA0066.10.641
MA0067.10.493
MA0068.10.00701
MA0069.10.0673
MA0070.10.444
MA0071.10.405
MA0072.10.336
MA0073.10.524
MA0074.10.201
MA0076.11.02264e-10
MA0077.10.546
MA0078.10.408
MA0079.20.682
MA0080.21.75788e-10
MA0081.19.66066e-5
MA0083.11.55185e-4
MA0084.10.555
MA0087.10.261
MA0088.10.00496
MA0090.15.64708e-6
MA0091.10.72
MA0092.10.575
MA0093.10.21
MA0099.23.5419e-12
MA0100.11.16358e-6
MA0101.10.354
MA0102.20.0216
MA0103.10.761
MA0104.23.42392e-4
MA0105.10.12
MA0106.10.185
MA0107.10.0211
MA0108.20.00247
MA0111.10.434
MA0112.20.746
MA0113.10.543
MA0114.10.193
MA0115.10.226
MA0116.10.00205
MA0117.10.911
MA0119.10.942
MA0122.10.595
MA0124.10.275
MA0125.10.981
MA0131.10.0021
MA0135.10.885
MA0136.11.17042e-19
MA0137.20.967
MA0138.20.801
MA0139.10.827
MA0140.17.10889e-8
MA0141.10.817
MA0142.10.418
MA0143.10.933
MA0144.10.406
MA0145.10.133
MA0146.10.0875
MA0147.13.33557e-4
MA0148.10.071
MA0149.10.116
MA0150.10.0135
MA0152.10.148
MA0153.10.039
MA0154.10.176
MA0155.10.863
MA0156.13.91083e-16
MA0157.10.986
MA0159.10.653
MA0160.10.34
MA0162.10.58
MA0163.18.51862e-12
MA0164.10.441
MA0258.10.993
MA0259.10.117


library id: CNhs12553This sample isn't target for the analysis



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12588

Novel motifP-value
10.429
100.0192
1000.411
1010.424
1020.899
1030.908
1040.819
1050.614
1060.279
1070.0343
1080.0763
1090.26
110.157
1100.284
1110.6
1120.972
1130.883
1140.918
1150.336
1160.644
1170.0201
1180.0974
1190.19
120.244
1200.597
1210.237
1220.949
1230.12
1240.49
1250.0188
1260.291
1270.338
1280.594
1290.0753
130.00665
1300.664
1310.224
1320.243
1330.366
1340.76
1350.481
1360.0579
1370.105
1380.558
1390.707
140.992
1400.242
1410.445
1420.582
1430.321
1440.614
1450.555
1460.293
1470.0101
1480.662
1490.227
150.863
1500.955
1510.802
1520.211
1530.353
1540.77
1550.013
1560.939
1570.0825
1580.408
1590.0558
160.415
1600.7
1610.422
1620.921
1630.301
1640.145
1650.345
1660.305
1670.243
1680.909
1690.651
170.221
180.0322
190.617
20.239
200.443
210.968
220.573
231.04664e-4
240.517
250.0726
260.345
270.998
280.859
290.0285
30.246
300.0687
310.201
320.015
330.225
340.981
350.76
360.0363
370.274
380.792
390.264
40.808
400.0994
410.69
420.239
430.611
440.942
450.257
460.885
470.103
480.0991
490.915
50.462
500.71
510.984
520.146
530.484
540.21
550.383
560.714
570.672
580.444
590.929
60.394
600.383
610.0724
620.397
630.519
640.216
650.062
660.675
670.952
680.134
690.381
70.112
700.103
710.156
720.221
730.97
740.5
750.0475
760.169
770.0594
780.692
790.14
80.291
800.797
810.983
820.859
830.0222
840.409
850.045
860.562
870.0372
880.486
890.162
90.743
900.257
910.476
920.0475
930.903
940.708
950.0809
960.833
970.569
980.758
990.079


library id: CNhs12553This sample isn't target for the analysis



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12588
library id: CNhs12553


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000034 (stem cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000021 (hematopoietic stem cell sample)
0000026 (human CD34-positive hematopoietic stem cell sample)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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