FFCP PHASE1:Hg19::chr11:60869980..60869987,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:60869980..60869987,+ to FFCP PHASE1:Hg19::chr11:60869980..60869987,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=921 | |EntrezGene=921 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1685 | |HGNC=1685 | ||
|TSSclassifier=strong | |||
|UniProt=F5GYK3 | |UniProt=F5GYK3 | ||
|association_with_transcript=0bp_to_ENST00000544014_5end | |||
|cluster_id=chr11:60869980..60869987,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_CD5_5end | |||
|id=chr11:60869980..60869987,+ | |||
|ontology_enrichment_celltype=CL:0000084!4.57e-31!25;CL:0000827!4.57e-31!25;CL:0000738!8.75e-31!140;CL:0000791!7.11e-25!18;CL:0000789!7.11e-25!18;CL:0002420!7.11e-25!18;CL:0002419!7.11e-25!18;CL:0000790!7.11e-25!18;CL:0000037!5.53e-23!172;CL:0000566!5.53e-23!172;CL:0002087!1.22e-22!119;CL:0000988!1.31e-20!182;CL:0002032!5.19e-19!165;CL:0000837!5.19e-19!165;CL:0002031!1.44e-18!124;CL:0000542!2.21e-18!53;CL:0000051!2.21e-18!53;CL:0000625!1.61e-17!11;CL:0000838!1.82e-17!52;CL:0000624!8.47e-11!6;CL:0002057!1.06e-08!42;CL:0000766!8.92e-08!76;CL:0000860!8.92e-08!45 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.57e-45;25!CL:0000791;1.45e-42;18!CL:0000789;1.45e-42;18!CL:0002419;1.45e-42;18!CL:0000625;2.81e-29;11!CL:0000624;1.17e-17;6!CL:0000542;3.61e-16;53!CL:0000898;2.64e-09;3!CL:0000623;5.41e-09;3!CL:0000226;1.27e-08;3!CL:0000842;1.27e-08;3!CL:0002087;9.07e-07;104!CL:0000815;9.22e-07;2!CL:0000792;9.22e-07;2!CL:0002677;9.22e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.34e-45,25;CL:0000827,1.34e-45,25;CL:0000791,1.16e-42,18;CL:0000789,1.16e-42,18;CL:0002420,1.16e-42,18;CL:0002419,1.16e-42,18;CL:0000790,1.16e-42,18;CL:0000625,2.17e-29,11;CL:0000542,5.34e-29,53;CL:0000051,5.34e-29,53;CL:0000838,1.96e-27,52;CL:0000738,1.34e-22,136;CL:0000624,1.20e-17,6;CL:0002087,6.83e-17,115;CL:0000037,2.71e-16,168;CL:0000988,6.11e-15,177;CL:0002032,2.65e-13,161;CL:0000837,2.65e-13,161;CL:0002031,1.74e-11,120;CL:0000898,2.68e-09,3;CL:0000623,5.49e-09,3;CL:0000825,5.49e-09,3;CL:0000226,1.53e-08,3;CL:0000842,1.53e-08,3;CL:0000815,8.84e-07,2;CL:0000792,8.84e-07,2;CL:0002677,8.84e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.45e-42;18!CL:0000051;3.61e-16;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.80e-13!102;UBERON:0003061!3.80e-13!102;UBERON:0000178!8.86e-13!15;UBERON:0000179!8.86e-13!15;UBERON:0000463!8.86e-13!15;UBERON:0002193!1.30e-12!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.42e-22;15!UBERON:0000179;4.42e-22;15!UBERON:0000463;4.42e-22;15!UBERON:0002390;2.55e-13;32!UBERON:0002193;4.43e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.31e-22,15;UBERON:0000179,5.31e-22,15;UBERON:0000463,5.31e-22,15;UBERON:0002370,8.99e-07,4;UBERON:0005058,8.99e-07,4;UBERON:0009113,8.99e-07,4;UBERON:0003295,8.99e-07,4;UBERON:0005562,8.99e-07,4 | |||
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| ||
|short_description=p2@CD5 | |||
}} | }} |
Latest revision as of 15:07, 18 September 2015
Short description: | p2@CD5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CD5_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000544014_5end |
EntrezGene: | CD5 |
HGNC: | 1685 |
UniProt: | F5GYK3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.34e-45 | 25 |
pro-T cell | 1.34e-45 | 25 |
mature alpha-beta T cell | 1.16e-42 | 18 |
alpha-beta T cell | 1.16e-42 | 18 |
immature T cell | 1.16e-42 | 18 |
mature T cell | 1.16e-42 | 18 |
immature alpha-beta T cell | 1.16e-42 | 18 |
CD8-positive, alpha-beta T cell | 2.17e-29 | 11 |
lymphocyte | 5.34e-29 | 53 |
common lymphoid progenitor | 5.34e-29 | 53 |
lymphoid lineage restricted progenitor cell | 1.96e-27 | 52 |
leukocyte | 1.34e-22 | 136 |
CD4-positive, alpha-beta T cell | 1.20e-17 | 6 |
nongranular leukocyte | 6.83e-17 | 115 |
hematopoietic stem cell | 2.71e-16 | 168 |
hematopoietic cell | 6.11e-15 | 177 |
hematopoietic oligopotent progenitor cell | 2.65e-13 | 161 |
hematopoietic multipotent progenitor cell | 2.65e-13 | 161 |
hematopoietic lineage restricted progenitor cell | 1.74e-11 | 120 |
naive T cell | 2.68e-09 | 3 |
natural killer cell | 5.49e-09 | 3 |
pro-NK cell | 5.49e-09 | 3 |
single nucleate cell | 1.53e-08 | 3 |
mononuclear cell | 1.53e-08 | 3 |
regulatory T cell | 8.84e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 8.84e-07 | 2 |
naive regulatory T cell | 8.84e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 5.31e-22 | 15 |
haemolymphatic fluid | 5.31e-22 | 15 |
organism substance | 5.31e-22 | 15 |
thymus | 8.99e-07 | 4 |
hemolymphoid system gland | 8.99e-07 | 4 |
thymic region | 8.99e-07 | 4 |
pharyngeal gland | 8.99e-07 | 4 |
thymus primordium | 8.99e-07 | 4 |