FFCP PHASE1:Hg19::chr15:77907723..77907735,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:77907723..77907735,- to FFCP PHASE1:Hg19::chr15:77907723..77907735,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84894 | |EntrezGene=84894 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=21205 | |HGNC=21205 | ||
|TSSclassifier=strong | |||
|UniProt=Q96FE5 | |UniProt=Q96FE5 | ||
|association_with_transcript=59bp_to_AY324322_5end | |||
|cluster_id=chr15:77907723..77907735,- | |||
|coexpression_cluster_id=C2350 | |||
|description=CAGE_peak_13_at_LINGO1_5end | |||
|id=chr15:77907723..77907735,- | |||
|ontology_enrichment_celltype=CL:0002322!1.75e-11!5;CL:0000540!1.50e-08!6;CL:0000031!1.50e-08!6;CL:0000404!1.50e-08!6;CL:0000148!4.89e-07!10;CL:0000541!4.89e-07!10 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!4.59e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:171;3.25e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,3.03e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0001017!2.10e-45!82;UBERON:0005743!1.06e-42!86;UBERON:0001049!2.02e-42!57;UBERON:0005068!2.02e-42!57;UBERON:0006241!2.02e-42!57;UBERON:0007135!2.02e-42!57;UBERON:0000073!1.55e-41!94;UBERON:0001016!1.55e-41!94;UBERON:0001869!1.74e-40!32;UBERON:0002020!2.28e-40!34;UBERON:0003528!2.28e-40!34;UBERON:0002619!4.44e-40!22;UBERON:0000955!4.04e-39!69;UBERON:0006238!4.04e-39!69;UBERON:0002780!3.00e-38!41;UBERON:0001890!3.00e-38!41;UBERON:0006240!3.00e-38!41;UBERON:0002616!3.72e-38!59;UBERON:0001893!1.07e-37!34;UBERON:0003080!3.81e-37!42;UBERON:0002791!7.68e-36!33;UBERON:0001950!9.44e-36!20;UBERON:0002346!2.56e-35!90;UBERON:0000956!1.11e-34!25;UBERON:0000203!1.11e-34!25;UBERON:0003075!1.75e-29!86;UBERON:0007284!1.75e-29!86;UBERON:0000924!8.60e-27!173;UBERON:0006601!8.60e-27!173;UBERON:0003056!1.03e-24!61;UBERON:0007023!1.64e-24!115;UBERON:0004121!1.43e-22!169;UBERON:0000033!1.11e-20!123;UBERON:0000153!3.51e-19!129;UBERON:0007811!3.51e-19!129;UBERON:0001871!4.09e-14!7;UBERON:0000200!7.61e-14!6;UBERON:0000349!4.15e-12!5;UBERON:0001872!1.16e-11!5;UBERON:0002420!2.44e-08!9;UBERON:0007245!2.44e-08!9;UBERON:0010009!2.44e-08!9;UBERON:0010011!2.44e-08!9;UBERON:0000454!2.44e-08!9;UBERON:0000025!7.31e-08!194;UBERON:0002308!1.26e-07!9;UBERON:0000125!1.26e-07!9;UBERON:0002771!1.28e-07!3;UBERON:0002021!1.57e-07!5;UBERON:0003076!3.66e-07!15;UBERON:0003057!3.66e-07!15;UBERON:0004733!5.00e-07!12;UBERON:0002028!5.00e-07!12;UBERON:0007277!5.00e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0001871;7.15e-24;6!UBERON:0002619;9.28e-20;22!UBERON:0002346;4.29e-19;4!UBERON:0000923;4.29e-19;4!UBERON:0010316;4.29e-19;4!UBERON:0005291;4.29e-19;4!UBERON:0000956;1.68e-17;25!UBERON:0000203;1.68e-17;25!UBERON:0002050;1.74e-15;5!UBERON:0005423;1.74e-15;5!UBERON:0000349;1.74e-15;5!UBERON:0001950;4.09e-14;20!UBERON:0002791;9.47e-14;32!UBERON:0001869;9.47e-14;32!UBERON:0001893;1.33e-12;34!UBERON:0003528;1.28e-10;34!UBERON:0002020;1.28e-10;34!UBERON:0002771;1.43e-10;2!UBERON:0001954;1.64e-10;2!UBERON:0003022;1.64e-10;2!UBERON:0002421;1.64e-10;2!UBERON:0002600;1.64e-10;2!UBERON:0001876;2.60e-10;2!UBERON:0000922;2.35e-09;49!UBERON:0002780;3.08e-08;41!UBERON:0001890;3.08e-08;41!UBERON:0002114;2.71e-07;2!UBERON:0000955;3.89e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001871,6.62e-24,6;UBERON:0002619,1.00e-19,22;UBERON:0000956,1.81e-17,25;UBERON:0000203,1.81e-17,25;UBERON:0000349,1.51e-15,5;UBERON:0001950,4.30e-14,20;UBERON:0002791,8.55e-14,32;UBERON:0001869,8.55e-14,32;UBERON:0003528,5.17e-13,34;UBERON:0002020,5.17e-13,34;UBERON:0001893,5.17e-13,34;UBERON:0002780,7.37e-11,41;UBERON:0001890,7.37e-11,41;UBERON:0003080,7.37e-11,41;UBERON:0006240,7.37e-11,41;UBERON:0002771,1.43e-10,2;UBERON:0001954,1.72e-10,2;UBERON:0003022,1.72e-10,2;UBERON:0002421,1.72e-10,2;UBERON:0002600,1.72e-10,2;UBERON:0001876,2.07e-10,2;UBERON:0002346,6.91e-10,86;UBERON:0000955,3.55e-09,68;UBERON:0006238,3.55e-09,68;UBERON:0000073,1.86e-08,53;UBERON:0002616,1.86e-08,53;UBERON:0001049,5.18e-08,56;UBERON:0005068,5.18e-08,56;UBERON:0006241,5.18e-08,56;UBERON:0007135,5.18e-08,56;UBERON:0001017,1.05e-07,81;UBERON:0003056,2.29e-07,61;UBERON:0002114,2.79e-07,2;UBERON:0001016,6.25e-07,89 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.609868530647977,0.927708378250397,0.232387885739037,0.414644220061482,1.00928340350251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.308482478109971,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.854592569019785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9882952955326,0.844016498463076,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0.463840490809256,1.99613798001194,0,0,0,0,0,0,0,0.874813840149763,0.347249989866585,0,0.241192877250816,0,0.110579259931225,0.295547618953547,0.438770794307945,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,1.22429104652196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50648636764703,0,0,0.213452994739353,0,0,0.114536596165916,0.343189995723929,0,0,0.235694034616795,0,0,0,0,0.600420288709789,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38568906942791,0.817220436669454,0.160753148465019,0.137539436597234,0.83088067605837,0,0,0.425246896606173,0,0,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,5.24712939078442,0.3755727921195,0,0.221858103073705,0.18628920882415,0.415045904808692,0,0,0.285465333544967,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0.219284049578707,0,0,0,0,0.345430341731199,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.629063767423586,0,0.33946505990805,2.76347396132188,1.98297222814403,0.558644917973244,0,0,0,0,0,0.321146125482298,0,0.478901577171454,1.02558182120378,0.504143392443436,0.276629009856872,0.968853873791107,0,0,0.11796972334774,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0.540300676947157,0.781078098613847,0.620060389503552,0.380494861163441,0.546974809018219,0,0,0.879356221798103,0,0,0.672567444437648,0,0,0,0,0,0.135939465953663,0.920818829879887,0,0,0,0.157115589916002,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,1.39265542612958,0,0,0.219881033490858,0,0,0.218559560503957,0.940634592723046,0.245148321753905,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0.951880862672806,1.30905207102113,0,0,0,0,0,0.109265571963696,0,0,0,0.0918948995348449,0,0,0,0.829169439458779,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.609868530647977,0.927708378250397,0.232387885739037,0.414644220061482,1.00928340350251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.308482478109971,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.854592569019785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9882952955326,0.844016498463076,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0.463840490809256,1.99613798001194,0,0,0,0,0,0,0,0.874813840149763,0.347249989866585,0,0.241192877250816,0,0.110579259931225,0.295547618953547,0.438770794307945,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,1.22429104652196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50648636764703,0,0,0.213452994739353,0,0,0.114536596165916,0.343189995723929,0,0,0.235694034616795,0,0,0,0,0.600420288709789,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38568906942791,0.817220436669454,0.160753148465019,0.137539436597234,0.83088067605837,0,0,0.425246896606173,0,0,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,5.24712939078442,0.3755727921195,0,0.221858103073705,0.18628920882415,0.415045904808692,0,0,0.285465333544967,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0.219284049578707,0,0,0,0,0.345430341731199,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.629063767423586,0,0.33946505990805,2.76347396132188,1.98297222814403,0.558644917973244,0,0,0,0,0,0.321146125482298,0,0.478901577171454,1.02558182120378,0.504143392443436,0.276629009856872,0.968853873791107,0,0,0.11796972334774,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0.540300676947157,0.781078098613847,0.620060389503552,0.380494861163441,0.546974809018219,0,0,0.879356221798103,0,0,0.672567444437648,0,0,0,0,0,0.135939465953663,0.920818829879887,0,0,0,0.157115589916002,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,1.39265542612958,0,0,0.219881033490858,0,0,0.218559560503957,0.940634592723046,0.245148321753905,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0.951880862672806,1.30905207102113,0,0,0,0,0,0.109265571963696,0,0,0,0.0918948995348449,0,0,0,0.829169439458779,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p13@LINGO1 | |||
}} | }} |
Latest revision as of 05:38, 19 September 2015
Short description: | p13@LINGO1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_LINGO1_5end |
Coexpression cluster: | C2350_medial_brain_amygdala_hippocampus_neuroectodermal_occipital_small |
Association with transcript: | 59bp_to_AY324322_5end |
EntrezGene: | LINGO1 |
HGNC: | 21205 |
UniProt: | Q96FE5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
temporal lobe | 6.62e-24 | 6 |
regional part of cerebral cortex | 1.00e-19 | 22 |
cerebral cortex | 1.81e-17 | 25 |
pallium | 1.81e-17 | 25 |
limbic system | 1.51e-15 | 5 |
neocortex | 4.30e-14 | 20 |
regional part of telencephalon | 8.55e-14 | 32 |
cerebral hemisphere | 8.55e-14 | 32 |
brain grey matter | 5.17e-13 | 34 |
gray matter | 5.17e-13 | 34 |
telencephalon | 5.17e-13 | 34 |
regional part of forebrain | 7.37e-11 | 41 |
forebrain | 7.37e-11 | 41 |
anterior neural tube | 7.37e-11 | 41 |
future forebrain | 7.37e-11 | 41 |
middle temporal gyrus | 1.43e-10 | 2 |
Ammon's horn | 1.72e-10 | 2 |
lobe parts of cerebral cortex | 1.72e-10 | 2 |
hippocampal formation | 1.72e-10 | 2 |
limbic lobe | 1.72e-10 | 2 |
amygdala | 2.07e-10 | 2 |
neurectoderm | 6.91e-10 | 86 |
brain | 3.55e-09 | 68 |
future brain | 3.55e-09 | 68 |
regional part of nervous system | 1.86e-08 | 53 |
regional part of brain | 1.86e-08 | 53 |
neural tube | 5.18e-08 | 56 |
neural rod | 5.18e-08 | 56 |
future spinal cord | 5.18e-08 | 56 |
neural keel | 5.18e-08 | 56 |
central nervous system | 1.05e-07 | 81 |
pre-chordal neural plate | 2.29e-07 | 61 |
duodenum | 2.79e-07 | 2 |
nervous system | 6.25e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 3.03e-08 | 10 |