FFCP PHASE1:Hg19::chr19:49468653..49468695,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:49468653..49468695,- to FFCP PHASE1:Hg19::chr19:49468653..49468695,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:49468653..49468695,- | |||
|coexpression_cluster_id=C467 | |||
|description=CAGE_peak_at_chr19:49468653..49468695,- | |||
|id=chr19:49468653..49468695,- | |||
|ontology_enrichment_celltype=CL:0002009!5.97e-22!65;CL:0002194!1.58e-21!63;CL:0000576!1.58e-21!63;CL:0000040!1.58e-21!63;CL:0000559!1.58e-21!63;CL:0000839!2.78e-20!70;CL:0000557!7.05e-20!71;CL:0000766!8.49e-17!76;CL:0002057!6.12e-16!42;CL:0000860!1.06e-14!45;CL:0000763!2.30e-12!112;CL:0000049!2.30e-12!112;CL:0002320!7.34e-11!365;CL:0000048!2.58e-10!430;CL:0000723!1.03e-09!436;CL:0000034!1.45e-09!444;CL:0000134!1.69e-09!358;CL:0002371!8.68e-09!591;CL:0000144!1.51e-08!625;CL:0000219!2.47e-07!390;CL:0000548!2.56e-07!679;CL:0000004!2.56e-07!679;CL:0000255!2.56e-07!679;CL:0000012!4.02e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.87e-19;39!CL:0000234;1.87e-19;39!CL:0000576;1.29e-18;48!CL:0000860;1.54e-18;33!CL:0002057;1.54e-18;33!CL:0000766;8.14e-12;69!CL:0000235;4.42e-08;6!CL:0000136;9.66e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,1.25e-33,59;CL:0000576,1.25e-33,59;CL:0000040,1.25e-33,59;CL:0000559,1.25e-33,59;CL:0002009,3.12e-33,61;CL:0000473,1.93e-30,48;CL:0000234,1.93e-30,48;CL:0000839,5.91e-29,66;CL:0000557,1.93e-28,67;CL:0000766,2.18e-25,72;CL:0000860,3.00e-24,42;CL:0002057,3.00e-24,42;CL:0002320,1.95e-17,361;CL:0000048,3.19e-17,427;CL:0000763,1.57e-16,108;CL:0000049,1.57e-16,108;CL:0000723,2.50e-16,433;CL:0000034,4.30e-16,441;CL:0000134,8.10e-16,354;CL:0000219,2.59e-12,386;CL:0002087,2.60e-11,115;CL:0002031,3.72e-11,120;CL:0000738,1.61e-09,136;CL:0000235,4.77e-08,6;CL:0000136,4.82e-08,15;CL:0002032,2.76e-07,161;CL:0000837,2.76e-07,161 | |||
|ontology_enrichment_development_v019=CL:0002057;2.13e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!7.45e-18!80;UBERON:0002405!2.32e-17!115;UBERON:0004765!2.36e-17!101;UBERON:0001434!2.36e-17!101;UBERON:0001474!1.81e-16!86;UBERON:0002390!3.19e-16!102;UBERON:0003061!3.19e-16!102;UBERON:0002204!1.91e-15!167;UBERON:0002193!7.70e-15!112;UBERON:0000926!1.15e-12!448;UBERON:0004120!1.15e-12!448;UBERON:0006603!1.15e-12!448;UBERON:0002384!2.84e-10!375;UBERON:0003081!2.11e-09!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004765,3.32e-24,90;UBERON:0002371,7.80e-24,76;UBERON:0001434,1.22e-22,100;UBERON:0001474,8.44e-22,82;UBERON:0002204,1.81e-19,167;UBERON:0002390,2.23e-19,98;UBERON:0003061,2.23e-19,98;UBERON:0002405,2.86e-19,93;UBERON:0002193,2.72e-17,108;UBERON:0002384,8.34e-17,371;UBERON:0000926,2.18e-14,315;UBERON:0004120,2.18e-14,315;UBERON:0006603,2.18e-14,315;UBERON:0003081,7.93e-11,203 | |||
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|phase1_expression=4.90531624030503,2.35510576280081,2.81908808191942,3.00219895059391,1.78784437770915,1.74467704820074,2.53299878168311,1.26343974685366,3.3954131665979,0.245733936501509,0,0,0.263766978228454,1.8564952944007,1.65698687863958,0.672325146451775,0.602694528023977,1.46062018077475,5.36726078669558,0,0,0,0,0.136874425072884,0.251085279189606,0.0764134057479513,0.164201178899891,0.0787107813136792,0,0,3.40595471295367,0,0.30120591877825,0,0.0774672005803016,0.284338464974843,0,0,0,1.30206522429511,21.0480545785529,19.1097262951198,22.4090743841742,2.32637182047304,1.13362783106643,1.69808842831471,3.95129362739664,4.52284676824008,1.54853185447552,4.60307827715441,2.81776777182011,9.45928919554341,2.06847408441971,0.645484683583826,0,2.44715041405386,2.72906150057846,7.41587498668779,3.06083892370903,3.53021929783703,1.91801137739712,1.9791078011203,3.39088217956774,2.13112375266347,2.03146467040009,2.8369261234557,1.86846674698672,3.51748131359441,1.0429658368404,6.08128765174327,3.02699751316684,3.68277635987565,9.49387162322653,5.70389273042243,3.82687739937078,6.28975936525128,3.81917345898083,2.85336096398862,0.803627933485401,1.71007646244749,5.9675003159727,6.94123784305609,0,0,0,0,0,1.14950487990897,0.661044872784862,0,0,1.17447437874188,0,0,0,1.31692042387539,0,0,0,0.668745981562712,0,0,0,0.445641827540694,0,0.443067789167242,0,0.768547918354051,0,0,0.276350017785848,0,0.296573126324121,0.267540828089713,0,0.339928028092699,0,0.34362744548263,0.506039384039006,0,0,0,0,0,0,0.236777252044017,0,0.201606743224732,0,0.289648807765598,0,2.68280343881454,1.2786256184353,1.0843174571537,0.50133791063589,3.0417768981773,0,0.486634870302636,0.378139268656271,0.221729397462564,0.087834785693126,0.589405839739707,0,0.370784442784429,18.8237488319716,9.0547463395619,13.827627893962,0.715471872916026,0.571994910780128,0,0.596287222100115,0,0.347140501607594,0,0.838998872419812,0.825354125820202,0.208994966536811,1.55050055501597,0,0.33472061276467,0.805658634218294,0,1.70843440283719,0,0,0.267899184852239,0.898117490504679,0.563057402416611,1.53316637465883,0,0.366403487860815,0,0,0,0,0.886413581652058,1.05927344650575,0,1.77334191099179,1.12135520028461,0,1.97334038733728,0.311211035399766,0.404132016209064,0.326923806226917,0.151357427644931,0,0.70296429550139,2.49728061464256,0,2.09228152772521,0.117434498643765,0.161872944368132,0,0.61246251376468,0.491337269247072,0.826606249406124,1.18800285728205,4.69807165629258,0,0.718618141816238,0.336672227908132,0.500474079487857,0.277064115484183,0.877955241761676,2.75839016219118,2.70428506031874,2.1552114800404,0,1.49490172172997,1.05965950579781,0,0.309157587715317,0,0.744467425326359,0,0.0974370051611986,0,0.920498986422993,0.484938170456436,0,0.201504196455281,0.847802961552438,1.35282597214308,1.09098448236334,0.573609190778008,0.365921118388786,0.265059536642971,0.116193942869518,0.621966330092223,1.51392510525377,0,1.56449532329816,3.21620469096443,1.38134921352481,0.928735856063958,8.66255378003503,0.828147600278907,0.168584690078102,0.482022059766964,0.55146986366197,0,0,0.404493924480493,0.196221465125346,0,0.738155454624648,0,1.6462960453256,0,1.26755034821831,0,1.18157981336281,0,0.737930631258681,0.514703430895577,0.329250856225877,0,0.301586917234893,0.370353780634118,2.28065813717227,3.11980435583874,0,0.695582429850461,0.469634776943287,0.866198686566443,0,0.380508304469197,0,0,20.6822285113414,17.5503198854428,21.7001496941543,1.87467667973554,0,0.141775097242386,0,0,0.383382679165211,0,0.880484340132261,0.829312462163088,0.288239906833923,0.50496973370552,0.63497894292169,0,0,1.71072446022705,0.514137463516618,0,0.857479297891735,0,0,0.36669142910475,2.06834745212444,10.7296933755565,0,0.531876233169741,1.04007436911366,0.771622122786426,0,0.532844358032199,1.71573592389777,5.96883765930587,1.64648067356154,1.30294473717494,4.6200953336531,2.37585561880029,2.1100756394171,0,0.799783929456456,35.2708963859452,28.1263971201991,8.43335757932127,0.958499421966331,0,0,1.15825045334063,1.02738161275192,0,1.12085143993527,0,0,0.385029108839245,0,0,0,1.17261385734044,0.637938751653163,0.749007023947182,0,0.414415513436035,2.08575535922538,4.50153468953709,1.62759014219841,1.45579603071565,0.535286966391485,2.83864347061082,1.52283839490527,0.300946099727719,4.5481500811197,1.03473071292505,0,1.10621501125022,1.82455590382974,0.783204629850962,0.686286847621712,0,0.862856803274467,0.533637789017222,6.66880657181771,3.32870879020994,2.11673205330776,0.992431231275107,0.306923946576125,3.36792113319688,2.94720043288112,1.02341449813341,3.53878626515936,0,0,1.24293207719189,0.410635780069046,0,0.464841513839837,0.241718899183244,0.40101294060657,0,1.83703117063371,1.45672934405374,4.72047893853927,0.451199612907412,0.616122696835318,0.784349769176855,1.46139224653261,0.105551628892876,0,0,0,0,0.270946437543853,0.501689773854853,0,3.3243040357149,0.671624264166535,0.438519753291869,1.0457418040996,1.53870075069834,0.656029291399411,0.6507567893286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| ||
|short_description=p@chr19:49468653..49468695,- | |||
}} | }} |
Latest revision as of 15:56, 27 July 2015
Short description: | p@chr19:49468653..49468695, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:49468653..49468695, - |
Coexpression cluster: | C467_CD14_Monocytederived_Mesenchymal_Macrophage_Dendritic_mucinous_liver |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 1.25e-33 | 59 |
monocyte | 1.25e-33 | 59 |
monoblast | 1.25e-33 | 59 |
promonocyte | 1.25e-33 | 59 |
macrophage dendritic cell progenitor | 3.12e-33 | 61 |
defensive cell | 1.93e-30 | 48 |
phagocyte | 1.93e-30 | 48 |
myeloid lineage restricted progenitor cell | 5.91e-29 | 66 |
granulocyte monocyte progenitor cell | 1.93e-28 | 67 |
myeloid leukocyte | 2.18e-25 | 72 |
classical monocyte | 3.00e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.00e-24 | 42 |
connective tissue cell | 1.95e-17 | 361 |
multi fate stem cell | 3.19e-17 | 427 |
myeloid cell | 1.57e-16 | 108 |
common myeloid progenitor | 1.57e-16 | 108 |
somatic stem cell | 2.50e-16 | 433 |
stem cell | 4.30e-16 | 441 |
mesenchymal cell | 8.10e-16 | 354 |
motile cell | 2.59e-12 | 386 |
nongranular leukocyte | 2.60e-11 | 115 |
hematopoietic lineage restricted progenitor cell | 3.72e-11 | 120 |
leukocyte | 1.61e-09 | 136 |
macrophage | 4.77e-08 | 6 |
fat cell | 4.82e-08 | 15 |
hematopoietic oligopotent progenitor cell | 2.76e-07 | 161 |
hematopoietic multipotent progenitor cell | 2.76e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
skeletal element | 3.32e-24 | 90 |
bone marrow | 7.80e-24 | 76 |
skeletal system | 1.22e-22 | 100 |
bone element | 8.44e-22 | 82 |
musculoskeletal system | 1.81e-19 | 167 |
hematopoietic system | 2.23e-19 | 98 |
blood island | 2.23e-19 | 98 |
immune system | 2.86e-19 | 93 |
hemolymphoid system | 2.72e-17 | 108 |
connective tissue | 8.34e-17 | 371 |
mesoderm | 2.18e-14 | 315 |
mesoderm-derived structure | 2.18e-14 | 315 |
presumptive mesoderm | 2.18e-14 | 315 |
lateral plate mesoderm | 7.93e-11 | 203 |