FFCP PHASE1:Hg19::chr1:112162433..112162469,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:112162433..112162469,+ to FFCP PHASE1:Hg19::chr1:112162433..112162469,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5906 | |EntrezGene=5906 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9855 | |HGNC=9855 | ||
|TSSclassifier=strong | |||
|UniProt=P62834,A8KAH9 | |UniProt=P62834,A8KAH9 | ||
|association_with_transcript=28bp_to_ENST00000369709,ENST00000436150,NM_001010935,NM_002884,uc001ebk.2,uc001ebl.2_5end | |||
|cluster_id=chr1:112162433..112162469,+ | |||
|description=CAGE_peak_1_at_RAP1A_5end | |||
|id=chr1:112162433..112162469,+ | |||
|ontology_enrichment_celltype=CL:0000738!6.09e-43!140;CL:0000037!2.06e-39!172;CL:0000566!2.06e-39!172;CL:0002031!8.31e-39!124;CL:0002032!6.20e-38!165;CL:0000837!6.20e-38!165;CL:0002087!1.05e-35!119;CL:0000988!1.12e-33!182;CL:0000766!3.93e-31!76;CL:0000839!1.21e-27!70;CL:0000763!4.49e-26!112;CL:0000049!4.49e-26!112;CL:0000557!6.99e-26!71;CL:0002009!5.30e-25!65;CL:0002194!2.75e-24!63;CL:0000576!2.75e-24!63;CL:0000040!2.75e-24!63;CL:0000559!2.75e-24!63;CL:0002057!2.37e-23!42;CL:0000860!7.35e-22!45;CL:0000134!2.62e-13!358;CL:0002320!3.36e-12!365;CL:0000838!9.39e-11!52;CL:0000542!1.18e-10!53;CL:0000051!1.18e-10!53;CL:0000791!5.89e-09!18;CL:0000789!5.89e-09!18;CL:0002420!5.89e-09!18;CL:0002419!5.89e-09!18;CL:0000790!5.89e-09!18;CL:0000048!1.64e-08!430;CL:0000723!5.57e-08!436;CL:0000219!1.40e-07!390;CL:0000034!2.12e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.69e-17;33!CL:0002057;5.69e-17;33!CL:0000473;5.34e-16;39!CL:0000234;5.34e-16;39!CL:0000576;3.00e-15;48!CL:0000766;8.09e-14;69!CL:0002087;1.27e-10;104!CL:0000738;1.20e-09;136!CL:0000791;5.94e-09;18!CL:0000789;5.94e-09;18!CL:0002419;5.94e-09;18!CL:0000763;3.21e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.50e-44,136;CL:0000037,1.89e-40,168;CL:0002031,3.05e-40,120;CL:0002032,5.55e-39,161;CL:0000837,5.55e-39,161;CL:0002087,4.28e-37,115;CL:0000988,6.55e-35,177;CL:0000766,4.77e-33,72;CL:0000839,1.67e-29,66;CL:0000557,1.31e-27,67;CL:0000763,3.47e-27,108;CL:0000049,3.47e-27,108;CL:0002009,7.98e-27,61;CL:0002194,4.08e-26,59;CL:0000576,4.08e-26,59;CL:0000040,4.08e-26,59;CL:0000559,4.08e-26,59;CL:0000473,2.57e-25,48;CL:0000234,2.57e-25,48;CL:0000860,2.37e-23,42;CL:0002057,2.37e-23,42;CL:0000134,1.63e-13,354;CL:0002320,2.17e-12,361;CL:0000838,9.39e-11,52;CL:0000542,1.18e-10,53;CL:0000051,1.18e-10,53;CL:0000791,5.89e-09,18;CL:0000789,5.89e-09,18;CL:0002420,5.89e-09,18;CL:0002419,5.89e-09,18;CL:0000790,5.89e-09,18;CL:0000048,1.64e-08,427;CL:0000723,5.59e-08,433;CL:0000219,1.04e-07,386;CL:0000034,2.13e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;5.88e-17;42!CL:0000790;5.94e-09;18!CL:0000049;6.98e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.37e-29!102;UBERON:0003061!4.37e-29!102;UBERON:0002193!3.24e-26!112;UBERON:0002371!8.43e-22!80;UBERON:0007023!7.46e-21!115;UBERON:0001474!1.40e-18!86;UBERON:0002405!3.47e-16!115;UBERON:0004765!2.49e-15!101;UBERON:0001434!2.49e-15!101;UBERON:0002384!6.27e-11!375;UBERON:0003081!1.60e-10!216;UBERON:0002204!3.24e-09!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.97e-30,98;UBERON:0003061,1.97e-30,98;UBERON:0002193,2.47e-27,108;UBERON:0002371,4.13e-23,76;UBERON:0002405,1.45e-22,93;UBERON:0007023,9.34e-21,114;UBERON:0001474,1.24e-19,82;UBERON:0004765,1.17e-18,90;UBERON:0001434,2.40e-15,100;UBERON:0003081,3.13e-13,203;UBERON:0002384,4.22e-11,371;UBERON:0002204,5.47e-09,167;UBERON:0000926,1.02e-07,315;UBERON:0004120,1.02e-07,315;UBERON:0006603,1.02e-07,315 | |||
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| ||
|short_description=p1@RAP1A | |||
}} | }} |
Latest revision as of 03:53, 16 September 2015
Short description: | p1@RAP1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAP1A_5end |
Coexpression cluster: | NA |
Association with transcript: | 28bp_to_ENST00000369709, ENST00000436150, NM_001010935, NM_002884, uc001ebk.2, uc001ebl.2_5end |
EntrezGene: | RAP1A |
HGNC: | 9855 |
UniProt: | P62834A8KAH9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.97e-30 | 98 |
blood island | 1.97e-30 | 98 |
hemolymphoid system | 2.47e-27 | 108 |
bone marrow | 4.13e-23 | 76 |
immune system | 1.45e-22 | 93 |
adult organism | 9.34e-21 | 114 |
bone element | 1.24e-19 | 82 |
skeletal element | 1.17e-18 | 90 |
skeletal system | 2.40e-15 | 100 |
lateral plate mesoderm | 3.13e-13 | 203 |
connective tissue | 4.22e-11 | 371 |
musculoskeletal system | 5.47e-09 | 167 |
mesoderm | 1.02e-07 | 315 |
mesoderm-derived structure | 1.02e-07 | 315 |
presumptive mesoderm | 1.02e-07 | 315 |