FFCP PHASE1:Hg19::chr21:47532366..47532425,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr21:47532366..47532425,+ to FFCP PHASE1:Hg19::chr21:47532366..47532425,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=34bp_to_ENST00000460886_5end | |||
|cluster_id=chr21:47532366..47532425,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_3_at_COL6A2_5end | |||
|id=chr21:47532366..47532425,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.25e-45!180;CL:0000057!5.21e-25!75;CL:0000680!1.02e-18!57;CL:0000056!1.02e-18!57;CL:0000355!1.02e-18!57;CL:0000183!4.33e-18!59;CL:0000187!5.17e-18!54;CL:0000393!3.81e-17!60;CL:0000211!3.81e-17!60;CL:0000192!1.78e-14!42;CL:0000514!1.78e-14!42;CL:0000048!9.14e-12!430;CL:0000359!4.55e-11!32;CL:0000723!8.43e-11!436;CL:0000034!2.51e-10!444;CL:0002620!2.99e-09!23;CL:0000499!6.13e-08!27;CL:0000222!4.58e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000192;4.28e-12;43!CL:0000187;1.32e-11;55!CL:0000359;2.03e-11;32!CL:0002620;2.70e-11;23!CL:0000134;3.22e-11;55!CL:0000723;6.67e-11;61!CL:0000057;6.94e-11;73!CL:0000393;5.40e-10;61!CL:0000211;5.40e-10;61!CL:0000048;6.92e-10;58!CL:0002320;1.59e-09;188!CL:0002570;7.79e-08;8!CL:0000499;9.01e-08;28!CL:0000034;1.60e-07;69!CL:0002334;2.85e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.54e-27,76;CL:0000680,2.17e-21,58;CL:0000056,2.17e-21,58;CL:0000355,2.17e-21,58;CL:0000187,1.65e-20,55;CL:0000048,4.56e-20,427;CL:0000723,6.28e-19,433;CL:0000393,3.68e-18,61;CL:0000211,3.68e-18,61;CL:0000034,8.24e-18,441;CL:0000192,1.22e-16,43;CL:0000514,1.22e-16,43;CL:0000359,5.99e-12,32;CL:0002620,2.68e-11,23;CL:0002320,3.60e-09,361;CL:0002570,7.51e-08,8;CL:0000499,1.03e-07,28;CL:0000134,2.16e-07,354;CL:0002334,3.63e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;4.28e-12;43!CL:0000355;2.00e-11;58 | |||
|ontology_enrichment_disease=DOID:2394!2.07e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;3.05e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.97e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!6.29e-25!83;UBERON:0002329!6.29e-25!83;UBERON:0003077!6.29e-25!83;UBERON:0003059!6.29e-25!83;UBERON:0007282!6.29e-25!83;UBERON:0009618!6.29e-25!83;UBERON:0007285!6.29e-25!83;UBERON:0004290!8.66e-24!70;UBERON:0002385!5.73e-20!63;UBERON:0001015!5.73e-20!63;UBERON:0000383!5.73e-20!63;UBERON:0001134!1.20e-19!61;UBERON:0002036!1.20e-19!61;UBERON:0003082!1.20e-19!61;UBERON:0000486!2.95e-19!82;UBERON:0005256!6.34e-16!143;UBERON:0003102!1.06e-10!95;UBERON:0002100!1.88e-10!216;UBERON:0002199!6.92e-10!45;UBERON:0002416!6.92e-10!45;UBERON:0001013!5.02e-09!14;UBERON:0000475!5.29e-08!365;UBERON:0004872!1.00e-07!84;UBERON:0002097!1.33e-07!40;UBERON:0003104!2.05e-07!238;UBERON:0009142!2.05e-07!238;UBERON:0004573!2.10e-07!33;UBERON:0004571!2.10e-07!33;UBERON:0001637!4.37e-07!42;UBERON:0003509!4.37e-07!42;UBERON:0004572!4.37e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.47e-11;31!UBERON:0001015;1.47e-11;31!UBERON:0000383;1.47e-11;31!UBERON:0001013;1.11e-10;14!UBERON:0002384;9.76e-10;198!UBERON:0002199;9.24e-09;46!UBERON:0002416;9.24e-09;46!UBERON:0002204;6.23e-08;70!UBERON:0002097;7.45e-08;41!UBERON:0004573;1.30e-07;33!UBERON:0004571;1.30e-07;33!UBERON:0003102;1.56e-07;50!UBERON:0001134;3.29e-07;16!UBERON:0002036;3.29e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,4.81e-27,73;UBERON:0002329,5.05e-27,71;UBERON:0003059,5.05e-27,71;UBERON:0007282,5.05e-27,71;UBERON:0004290,5.05e-27,71;UBERON:0009618,5.05e-27,71;UBERON:0003077,2.67e-26,72;UBERON:0007285,2.67e-26,72;UBERON:0007503,8.95e-24,78;UBERON:0001134,5.50e-22,62;UBERON:0002036,5.50e-22,62;UBERON:0003082,5.50e-22,62;UBERON:0000486,7.65e-22,83;UBERON:0002385,9.13e-22,64;UBERON:0001015,9.13e-22,64;UBERON:0000383,9.13e-22,64;UBERON:0005256,8.04e-18,122;UBERON:0003104,3.86e-17,160;UBERON:0009142,3.86e-17,160;UBERON:0002199,3.39e-13,46;UBERON:0002416,3.39e-13,46;UBERON:0003102,3.19e-11,99;UBERON:0001013,8.64e-11,14;UBERON:0002097,2.83e-10,41;UBERON:0000926,8.74e-10,315;UBERON:0004120,8.74e-10,315;UBERON:0006603,8.74e-10,315;UBERON:0002384,1.14e-09,371;UBERON:0000490,2.12e-09,148;UBERON:0002100,3.80e-09,199;UBERON:0004573,1.68e-08,33;UBERON:0004571,1.68e-08,33;UBERON:0001637,3.65e-08,42;UBERON:0003509,3.65e-08,42;UBERON:0004572,3.65e-08,42;UBERON:0004872,3.57e-07,83 | |||
|phase1_expression=5.99538651592837,22.0523539607713,7.04772020479856,17.0124607200322,10.7270662662549,10.4680622892044,15.1979926900986,6.94891860769514,15.9323233201902,0,0,0.218441372130172,0,3.96052329472149,11.930305526205,21.5144046864568,18.0808358407193,11.684961446198,11.7103871709722,1.96993692922861,9.58803248847989,7.20945859399602,0.286235987131057,1.64249310087461,0.753255837568817,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601633342410425,0,0,0.32389366601898,0,0,0,0,0,0,0,0.28769239232215,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0.398927315243264,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786021525498329,0.411202997999018,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0.14828656316206,0,1.04535523804977,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0.473554504088034,0,0.201606743224732,0.802320587350522,0.724122019413995,34.1329612839546,0,0.895037932904712,3.97583067623023,11.0294340339896,14.1949588581607,5.5670016293577,14.1124112387764,0.189069634328136,0.665188192387692,0.527008714158756,0.916853528483988,0,0,0,0,0.132957960518865,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0.488124115096339,0,0,0,0.22452937262617,0.112611480483322,0,0,0,0,0,0,4.96971951695318,5.69837302490609,1.85372853138506,24.0942761429004,4.25602058638028,5.04609840128076,5.33744978648525,3.7000132262574,2.48968828319813,4.84958419450877,5.72116660897106,3.48122083583342,13.25204626304,1.40592859100278,9.67696238173994,1.1409436430889,13.3009325691103,6.6937664226946,6.63679071909339,8.70795001553941,2.65400422631361,14.0031121735415,6.81950155760052,7.12801714369232,26.7048283620841,8.19145225744224,17.2468354035897,2.35670559535693,5.25497783462249,0.831192346452549,1.75591048352335,15.017901994152,13.2209491837805,0.567160915800105,12.5572744982203,6.83383644219416,11.4443226626163,18.0054657650641,4.84346887420663,9.53269998168828,4.46680455195816,6.41350062516812,3.50773218580315,9.59248342127635,7.91629128323774,13.5782687727802,22.7206139210633,3.72782763442269,3.39121184620975,0,0,0,0.365921118388786,0.397589304964456,1.04574548582567,0.518305275076852,0,0.72995471815166,14.0804579096834,40.5241791061518,8.28809528114883,6.96551892047969,12.9938306700525,0,0,0,0,0,0,0,0,0,0,15.426595118379,5.7620361586396,26.4615680493976,0,0,0,0,0,0.686271241194102,0,0,0,0,0.977424915930974,17.6788913497528,0,0.34779121492523,0.352226082707465,0,0,0,0,0,0,0,0.297262324577456,0,0.16798212819886,0,0,0,0.383382679165211,0,0,0,0.144119953416961,0.25248486685276,0.126995788584338,0,0,8.55362230113526,1.54241239054985,0,0.285826432630578,2.01835951821649,2.1798003441664,1.3200891447771,3.49033632546,28.6125156681506,23.668477071568,2.6593811658487,2.08014873822732,1.80045161983499,0,6.12771011737029,4.71827379071887,7.5967024754802,1.64648067356154,5.86325131728723,5.68627117988073,3.16780749173372,0,0,0.899756920638513,0,0,0,2.63587341040741,9.18895486672911,2.85273810081437,3.76431397335706,7.19167128926342,1.07436577943937,0,0,2.58753089831421,1.28343036279748,0,0,0,0.167516265334349,0.637938751653163,0,0,0,4.2942022101699,10.5035809422532,16.0046363982844,7.27898015357825,7.49401752948079,1.89242898040722,3.63138386477411,3.61135319673263,61.4000260951159,7.24311499047534,2.65690239414175,5.8998133933345,7.81952530212746,7.44044398358414,15.0983106476777,0,0,0.106727557803444,0,1.66435439510497,0.907170879989041,3.2254015016441,3.22270143904931,18.8042263270159,6.40695746278505,3.07024349440022,5.14732547659544,5.93672265779964,15.4209693802656,12.2517590466058,1.47828880824856,14.5391240171414,17.4315567689939,0,0,0,5.1666501674073,17.8449344646583,18.0951692644005,0,0.385076685522074,0,1.46139224653261,0,1.13733384070897,0,0.215915916102139,0,0.270946437543853,1.00337954770971,0,0,0.895499018888713,0,0,0,0,0,0.618246069886334,0.640986253728404,0.330037999682352,1.72279661398852,2.60024098414608,0,5.12354806948246,9.55101426110795,10.7452572308291,8.54586749404089,5.6932729780185,15.8068196366509,9.6306088980194,4.09547363974992,0,0,0,0.10115778085555,1.39453664789186,17.3146790756852,2.0911118104818,3.38836938193698,2.66153015158511,0.869932992075073,7.22764454505288,3.57812216854978,2.60510858551767,1.89827654831236,5.52827562379092,2.55897791311334,7.27496279657665,6.0458617105928,17.2688700843831,3.41757669408298,11.5305552489143,7.53999375012393,1.81964233415984,1.58510321173008,7.58265221230166,3.90106991271672,6.58026422004468,19.017026416216,3.54899769660763,10.1811911006673,11.3008116620243,4.96228809191512,5.30751180192976,12.2766247871054,4.6302042741335,11.1502107847928,1.42037263873893,5.5768229657955,6.47899885824155,0.717056761020258,1.67023369722306,1.07001315444375,4.96665489698837,9.71095122369255,10.208141681757,1.89736586882858,8.39843328587959,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61158997199083,0,0,0,3.81991175580304,0,0,0,0,1.78093928036649,0,0.422250816255987,6.17668763578316,1.105135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| ||
|short_description=p3@COL6A2 | |||
}} | }} |
Latest revision as of 22:57, 18 September 2015
Short description: | p3@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | 34bp_to_ENST00000460886_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.54e-27 | 76 |
muscle precursor cell | 2.17e-21 | 58 |
myoblast | 2.17e-21 | 58 |
multi-potent skeletal muscle stem cell | 2.17e-21 | 58 |
muscle cell | 1.65e-20 | 55 |
multi fate stem cell | 4.56e-20 | 427 |
somatic stem cell | 6.28e-19 | 433 |
electrically responsive cell | 3.68e-18 | 61 |
electrically active cell | 3.68e-18 | 61 |
stem cell | 8.24e-18 | 441 |
smooth muscle cell | 1.22e-16 | 43 |
smooth muscle myoblast | 1.22e-16 | 43 |
vascular associated smooth muscle cell | 5.99e-12 | 32 |
skin fibroblast | 2.68e-11 | 23 |
connective tissue cell | 3.60e-09 | 361 |
mesenchymal stem cell of adipose | 7.51e-08 | 8 |
stromal cell | 1.03e-07 | 28 |
mesenchymal cell | 2.16e-07 | 354 |
preadipocyte | 3.63e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.97e-08 | 14 |