FFCP PHASE1:Hg19::chr5:49737061..49737073,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:49737061..49737073,- to FFCP PHASE1:Hg19::chr5:49737061..49737073,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=133418 | |EntrezGene=133418 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30465 | |HGNC=30465 | ||
|TSSclassifier=strong | |||
|UniProt=D6RDX7 | |UniProt=D6RDX7 | ||
|association_with_transcript=110bp_to_ENST00000508934_5end | |||
|cluster_id=chr5:49737061..49737073,- | |||
|description=CAGE_peak_3_at_EMB_5end | |||
|id=chr5:49737061..49737073,- | |||
|ontology_enrichment_celltype=CL:0000037!4.26e-41!172;CL:0000566!4.26e-41!172;CL:0000738!3.52e-38!140;CL:0000988!1.02e-37!182;CL:0002032!4.02e-37!165;CL:0000837!4.02e-37!165;CL:0002087!1.40e-34!119;CL:0002031!4.02e-29!124;CL:0000542!2.67e-27!53;CL:0000051!2.67e-27!53;CL:0000838!1.04e-26!52;CL:0000084!8.62e-14!25;CL:0000827!8.62e-14!25;CL:0000763!3.46e-13!112;CL:0000049!3.46e-13!112;CL:0000791!1.12e-12!18;CL:0000789!1.12e-12!18;CL:0002420!1.12e-12!18;CL:0002419!1.12e-12!18;CL:0000790!1.12e-12!18;CL:0000945!4.75e-12!24;CL:0000826!4.75e-12!24;CL:0000236!6.03e-11!14;CL:0000766!1.84e-10!76;CL:0002057!5.53e-09!42;CL:0002194!5.56e-09!63;CL:0000576!5.56e-09!63;CL:0000040!5.56e-09!63;CL:0000559!5.56e-09!63;CL:0000625!5.83e-09!11;CL:0002009!8.24e-09!65;CL:0000860!1.28e-07!45;CL:0000839!2.03e-07!70;CL:0000557!3.33e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.76e-22;53!CL:0000084;1.09e-18;25!CL:0000791;5.28e-18;18!CL:0000789;5.28e-18;18!CL:0002419;5.28e-18;18!CL:0000236;6.26e-18;13!CL:0000625;4.96e-15;11!CL:0000945;2.34e-14;24!CL:0002087;7.07e-11;104!CL:0000094;3.62e-09;8!CL:0000988;2.31e-08;177!CL:0000738;3.01e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.06e-41,168;CL:0000988,1.70e-40,177;CL:0000738,7.63e-40,136;CL:0000542,4.81e-37,53;CL:0000051,4.81e-37,53;CL:0002032,8.04e-37,161;CL:0000837,8.04e-37,161;CL:0000838,5.45e-36,52;CL:0002087,8.56e-35,115;CL:0002031,1.18e-27,120;CL:0000236,4.74e-19,14;CL:0000084,6.16e-19,25;CL:0000827,6.16e-19,25;CL:0000791,2.53e-18,18;CL:0000789,2.53e-18,18;CL:0002420,2.53e-18,18;CL:0002419,2.53e-18,18;CL:0000790,2.53e-18,18;CL:0000625,2.38e-15,11;CL:0000945,1.45e-14,24;CL:0000826,1.45e-14,24;CL:0000134,8.18e-10,354;CL:0000094,3.36e-09,8;CL:0002320,3.40e-09,361;CL:0000763,5.52e-09,108;CL:0000049,5.52e-09,108;CL:0000766,1.80e-07,72;CL:0000219,1.83e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000051;1.76e-22;53!CL:0000790;5.28e-18;18 | |||
|ontology_enrichment_disease=DOID:2531!6.62e-11!51;DOID:0060083!6.62e-11!51;DOID:1240!1.51e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:1240;9.78e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,2.48e-11,51;DOID:0060083,2.48e-11,51;DOID:1240,5.45e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.19e-12!102;UBERON:0003061!1.19e-12!102;UBERON:0002193!9.77e-11!112;UBERON:0000178!6.57e-07!15;UBERON:0000179!6.57e-07!15;UBERON:0000463!6.57e-07!15;UBERON:0002371!9.12e-07!80 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.53e-11;15!UBERON:0000179;2.53e-11;15!UBERON:0000463;2.53e-11;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.17e-11,15;UBERON:0000179,5.17e-11,15;UBERON:0000463,5.17e-11,15;UBERON:0002384,2.31e-08,371;UBERON:0002390,2.45e-07,98;UBERON:0003061,2.45e-07,98;UBERON:0002193,5.93e-07,108 | |||
|phase1_expression=0,0,0,0,0.893922188854576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.57470412614962,0.550975469195755,2.36018566109342,3.83829398097213,2.01260960310899,0,1.50602959389125,0,2.63388481973026,0.853015394924529,0.880801318004542,0.553995408531877,1.20326668482085,3.90619567288533,0.447830948479849,0,0.515151135268373,1.59938062657521,0,0.485168122375632,0.697287110717054,0.822335776043652,0.619412741790207,0.863077176966451,0.768482119587302,1.18241114944293,0.344745680736619,1.93645405075148,0,0.752969358170419,0.545812300115692,0.674170453335254,1.53041946185451,0.641858054152187,0,0.989553900560148,1.19678194572979,0.852449501065388,1.45104619314292,1.13477044938228,0,0.75374599577023,0.521482918420201,0.434377689410233,1.81619850790011,2.57794345191295,2.21523671208619,0.211255286311942,0.212604299965044,0.419317291016752,1.34794357375794,0.450530678524519,1.28580469357664,0,0,0,3.51992488922645,3.27683166757279,1.77901850772711,4.69403244823158,3.2031678962881,2.87376219977242,4.62731410949403,3.81621501814146,3.98449078376614,2.93618594685469,4.20500550937752,1.32171328579026,2.80254281490768,1.84368859342554,4.32761494250433,1.17903228824749,5.14003747498773,2.17342444007882,0.977766799900771,1.4203434172042,3.89653456815823,3.67654507721073,3.53527088969805,2.87994062958707,4.33286182024025,2.17755243533648,3.25148368899696,3.78207180588455,4.97430032014527,2.89803085735052,1.77943875794473,1.07016331235885,0,3.39928028092699,1.91610246800961,3.4362744548263,4.80737414837055,2.54852331459277,1.95325036156926,1.90090408889675,2.25862678616659,2.55973222308837,2.49861453104692,4.2619905367923,5.74789597844733,4.43534835094411,5.34880391567015,4.77920532813237,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.261958150995425,0.728590576585084,0,4.54366351116557,2.61194605948901,2.52620124985844,2.8618874916641,2.85997455390064,5.20040501861391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9534125230819,0,0,0,0,0.397227542439656,0.286836620748814,0,0.560677600142307,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0.280901613404497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,1.15956511897978,1.09098448236334,0.860413786167011,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32438929824395,0,0,0.658501712451753,0,0.804231779293047,0.277765335475589,0,0,1.44331342025273,0,0.117408694235822,0,0,0,0,0,0.246217006087397,0,0.297262324577456,0.93733833986777,1.17587489739202,1.27597587518148,1.25381931783988,1.16253575405585,0.383382679165211,0,0,0,0,0.12624243342638,0,0,0,1.71072446022705,0.102827492703324,0,0,0,0,0,1.42198887333556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0.434343920002738,0.410952645100767,0.537182889719687,0.672510863961164,3.94061520403854,5.17506179662842,1.66845947163673,0,0,0,0,0,6.74106321552464,2.99161459204025,8.70272578215674,0,0,0,0,0,0,0,0,0,0,1.32845119707087,0.553107505625109,0,0,0,1.03384013061444,1.07857100409308,4.48255742774466,0,0,0,0,0,0.561320188866147,0,0,0.64341568457443,0,0.462629081407967,0,0.246381468041427,0,0.116210378459959,0,1.40354529212299,0.460404944679482,0,0,0,0,0.15403067420883,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0.256450125116389,0.656029291399411,0.325378394664303,0.103041011647722,0,0,0,1.30012049207304,0,0.096670718292122,0,0,0.137836572484531,0,0.145016693914229,0.170453254832202,0,0.495854746082934,0.576570202095319,0.127612712494584,0.6069466851333,0,0,0,0,0,0,0.18532421910392,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0.35667105148125,0,0,0,0,0,0.192444225451024,0.670302275535787,0,0.0941438007767792,0,0,0.443430153536676,1.1486170010348,2.53723804616085,0,1.13929437434833,2.85878130549347,4.93634727703433,3.8908398671563,3.24018862342869,0.79312517629427,0,0,0.245040215981032,2.04383492638291,3.60673032441112,0.142283686696828,0.637705090915289,2.3949524571938,0.957526850661834,0.211673582723883,1.62310970137278,0.842391534340376,12.3246726677924,0.626719583092093,2.50634477090067,0.846458889008016,6.90528722945908,3.43059502224781,5.53600108997424,1.37402137902306,4.30137070031841,4.02616994206349,4.67177596793344,2.73543333562856,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,1.31843099381408,0,0.597743964753209,1.38141957765574,0,0,0.123084805461069,0,0.898683511473268,0,2.55786185113436,0.0986434056369336,7.18449277040819,0,0,0,0,0,0.0874599999961957,0.724999575434793,0.341380344856499,1.27126825146383,0.236387681767936,0,0.291604613383254,0,0,0.120596438625408,0,0,0,0,0,1.67308493134324,0,0.683652335082007,0,0,0,0,0,0,3.06579894587209,3.1396051279005,0.831058409500782,0,0,0,0,0,0,0,0,0,0,0.442287822516696,0.611030144933625,0,1.72989514525104,1.04421949505455,0.067401132980677,0.802577647298789,0.234264445725339,2.73682183823499,0.19566461893209,0,0,0,0,1.20054501294127,0.300646838828985,0.622129148383483,0,0,0,0,0,0,0,0,0,0.34945333648406,0.343972064943233,0,0,0,0.387956065953678,0,0,0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| ||
|short_description=p3@EMB | |||
}} | }} |
Latest revision as of 01:36, 18 September 2015
Short description: | p3@EMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_EMB_5end |
Coexpression cluster: | NA |
Association with transcript: | 110bp_to_ENST00000508934_5end |
EntrezGene: | EMB |
HGNC: | 30465 |
UniProt: | D6RDX7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.06e-41 | 168 |
hematopoietic cell | 1.70e-40 | 177 |
leukocyte | 7.63e-40 | 136 |
lymphocyte | 4.81e-37 | 53 |
common lymphoid progenitor | 4.81e-37 | 53 |
hematopoietic oligopotent progenitor cell | 8.04e-37 | 161 |
hematopoietic multipotent progenitor cell | 8.04e-37 | 161 |
lymphoid lineage restricted progenitor cell | 5.45e-36 | 52 |
nongranular leukocyte | 8.56e-35 | 115 |
hematopoietic lineage restricted progenitor cell | 1.18e-27 | 120 |
B cell | 4.74e-19 | 14 |
T cell | 6.16e-19 | 25 |
pro-T cell | 6.16e-19 | 25 |
mature alpha-beta T cell | 2.53e-18 | 18 |
alpha-beta T cell | 2.53e-18 | 18 |
immature T cell | 2.53e-18 | 18 |
mature T cell | 2.53e-18 | 18 |
immature alpha-beta T cell | 2.53e-18 | 18 |
CD8-positive, alpha-beta T cell | 2.38e-15 | 11 |
lymphocyte of B lineage | 1.45e-14 | 24 |
pro-B cell | 1.45e-14 | 24 |
mesenchymal cell | 8.18e-10 | 354 |
granulocyte | 3.36e-09 | 8 |
connective tissue cell | 3.40e-09 | 361 |
myeloid cell | 5.52e-09 | 108 |
common myeloid progenitor | 5.52e-09 | 108 |
myeloid leukocyte | 1.80e-07 | 72 |
motile cell | 1.83e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
blood | 5.17e-11 | 15 |
haemolymphatic fluid | 5.17e-11 | 15 |
organism substance | 5.17e-11 | 15 |
connective tissue | 2.31e-08 | 371 |
hematopoietic system | 2.45e-07 | 98 |
blood island | 2.45e-07 | 98 |
hemolymphoid system | 5.93e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.48e-11 | 51 |
immune system cancer | 2.48e-11 | 51 |
leukemia | 5.45e-08 | 39 |