FFCP PHASE1:Hg19::chr6:33168637..33168704,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:33168637..33168704,+ to FFCP PHASE1:Hg19::chr6:33168637..33168704,+: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7922 | |EntrezGene=7922 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4927 | |HGNC=4927 | ||
|TSSclassifier=strong | |||
|UniProt=Q92504,E7ESG6,F5H0B5 | |UniProt=Q92504,E7ESG6,F5H0B5 | ||
|association_with_transcript=0bp_to_ENST00000374677,ENST00000445037,ENST00000446283,ENST00000496894_5end | |||
|cluster_id=chr6:33168637..33168704,+ | |||
|coexpression_cluster_id=C562 | |||
|description=CAGE_peak_1_at_SLC39A7_5end | |||
|id=chr6:33168637..33168704,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.72e-32!180;CL:0000183!1.30e-17!59;CL:0000680!4.50e-17!57;CL:0000056!4.50e-17!57;CL:0000355!4.50e-17!57;CL:0000192!1.84e-16!42;CL:0000514!1.84e-16!42;CL:0000187!4.56e-16!54;CL:0000057!4.61e-16!75;CL:0000393!3.63e-14!60;CL:0000211!3.63e-14!60;CL:0000220!5.98e-14!246;CL:0000222!1.05e-13!119;CL:0002321!1.08e-13!248;CL:0000359!1.40e-13!32;CL:0000548!9.80e-13!679;CL:0000004!9.80e-13!679;CL:0000255!9.80e-13!679;CL:0000012!8.81e-12!682;CL:0000144!1.92e-10!625;CL:0002371!6.30e-10!591 | |||
|ontology_enrichment_celltype_v019=CL:0000359;9.00e-13;32!CL:0000192;1.05e-11;43!CL:0000134;1.27e-10;55!CL:0000187;3.64e-09;55!CL:0000723;4.03e-09;61!CL:0000048;4.96e-09;58!CL:0002320;2.47e-07;188!CL:0000349;2.86e-07;19!CL:0000393;3.33e-07;61!CL:0000211;3.33e-07;61!CL:0000057;3.94e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,3.33e-17,58;CL:0000056,3.33e-17,58;CL:0000355,3.33e-17,58;CL:0000057,1.43e-16,76;CL:0000192,1.46e-16,43;CL:0000514,1.46e-16,43;CL:0000187,3.38e-16,55;CL:0000393,2.61e-14,61;CL:0000211,2.61e-14,61;CL:0002321,6.76e-14,250;CL:0000222,6.98e-14,121;CL:0000359,1.40e-13,32;CL:0000349,2.72e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000514;1.05e-11;43!CL:0000355;2.17e-09;58 | |||
|ontology_enrichment_disease=DOID:2394!2.71e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.66e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.71e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0005256!6.91e-23!143;UBERON:0002100!2.66e-19!216;UBERON:0000490!8.56e-18!138;UBERON:0000914!1.49e-17!83;UBERON:0002329!1.49e-17!83;UBERON:0003077!1.49e-17!83;UBERON:0003059!1.49e-17!83;UBERON:0007282!1.49e-17!83;UBERON:0009618!1.49e-17!83;UBERON:0007285!1.49e-17!83;UBERON:0003914!2.65e-17!118;UBERON:0003104!5.03e-16!238;UBERON:0009142!5.03e-16!238;UBERON:0004290!5.37e-16!70;UBERON:0000486!4.32e-15!82;UBERON:0001134!5.35e-15!61;UBERON:0002036!5.35e-15!61;UBERON:0003082!5.35e-15!61;UBERON:0002385!3.42e-14!63;UBERON:0001015!3.42e-14!63;UBERON:0000383!3.42e-14!63;UBERON:0000475!4.61e-13!365;UBERON:0002049!1.56e-12!79;UBERON:0007798!1.56e-12!79;UBERON:0004872!1.62e-12!84;UBERON:0000481!1.93e-12!347;UBERON:0001637!2.10e-12!42;UBERON:0003509!2.10e-12!42;UBERON:0004572!2.10e-12!42;UBERON:0004573!2.33e-10!33;UBERON:0004571!2.33e-10!33;UBERON:0001981!1.27e-09!60;UBERON:0007500!1.27e-09!60;UBERON:0004537!1.27e-09!60;UBERON:0006965!1.27e-09!60;UBERON:0000055!1.45e-09!69;UBERON:0000119!2.35e-09!312;UBERON:0000468!4.93e-09!659;UBERON:0000483!5.97e-09!309;UBERON:0004535!1.43e-08!110;UBERON:0009569!2.09e-08!113;UBERON:0000926!2.21e-08!448;UBERON:0004120!2.21e-08!448;UBERON:0006603!2.21e-08!448;UBERON:0001009!2.45e-08!113;UBERON:0002417!1.06e-07!61;UBERON:0000916!1.06e-07!61;UBERON:0001048!1.12e-07!168;UBERON:0000477!2.98e-07!286;UBERON:0002107!3.08e-07!19;UBERON:0006925!3.08e-07!19;UBERON:0008836!3.08e-07!19;UBERON:0000478!7.05e-07!24;UBERON:0000480!7.42e-07!626;UBERON:0000467!8.64e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.99e-09;33!UBERON:0004571;1.99e-09;33!UBERON:0001637;3.01e-09;42!UBERON:0003509;3.01e-09;42!UBERON:0004572;3.01e-09;42!UBERON:0002107;3.06e-07;19!UBERON:0006925;3.06e-07;19!UBERON:0002384;3.69e-07;198!UBERON:0000478;7.40e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,4.27e-22,160;UBERON:0009142,4.27e-22,160;UBERON:0005256,1.16e-21,122;UBERON:0000490,2.96e-19,148;UBERON:0002100,1.06e-17,199;UBERON:0003914,3.87e-17,117;UBERON:0007503,4.81e-17,78;UBERON:0002329,3.82e-16,71;UBERON:0003059,3.82e-16,71;UBERON:0007282,3.82e-16,71;UBERON:0004290,3.82e-16,71;UBERON:0009618,3.82e-16,71;UBERON:0007524,5.43e-16,73;UBERON:0003077,1.70e-15,72;UBERON:0007285,1.70e-15,72;UBERON:0000486,3.03e-15,83;UBERON:0001134,3.86e-15,62;UBERON:0002036,3.86e-15,62;UBERON:0003082,3.86e-15,62;UBERON:0002385,2.45e-14,64;UBERON:0001015,2.45e-14,64;UBERON:0000383,2.45e-14,64;UBERON:0001637,2.10e-12,42;UBERON:0003509,2.10e-12,42;UBERON:0004572,2.10e-12,42;UBERON:0002049,4.42e-12,78;UBERON:0007798,4.42e-12,78;UBERON:0004872,4.51e-12,83;UBERON:0004573,2.33e-10,33;UBERON:0004571,2.33e-10,33;UBERON:0000119,7.44e-10,309;UBERON:0000483,1.94e-09,306;UBERON:0007500,3.49e-09,59;UBERON:0001981,3.49e-09,59;UBERON:0004537,3.49e-09,59;UBERON:0006965,3.49e-09,59;UBERON:0000055,3.80e-09,68;UBERON:0001048,1.84e-08,160;UBERON:0004535,3.17e-08,109;UBERON:0009569,4.27e-08,112;UBERON:0001009,5.33e-08,112;UBERON:0002417,1.47e-07,60;UBERON:0000916,1.47e-07,60;UBERON:0002107,3.08e-07,19;UBERON:0006925,3.08e-07,19;UBERON:0008836,3.08e-07,19;UBERON:0000478,7.05e-07,24 | |||
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| ||
|short_description=p1@SLC39A7 | |||
}} | }} |
Latest revision as of 06:09, 18 September 2015
Short description: | p1@SLC39A7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC39A7_5end |
Coexpression cluster: | C562_Smooth_Fibroblast_Preadipocyte_Hepatic_Alveolar_Adipocyte_Mesenchymal |
Association with transcript: | 0bp_to_ENST00000374677, ENST00000445037, ENST00000446283, ENST00000496894_5end |
EntrezGene: | SLC39A7 |
HGNC: | 4927 |
UniProt: | Q92504E7ESG6F5H0B5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 3.33e-17 | 58 |
myoblast | 3.33e-17 | 58 |
multi-potent skeletal muscle stem cell | 3.33e-17 | 58 |
fibroblast | 1.43e-16 | 76 |
smooth muscle cell | 1.46e-16 | 43 |
smooth muscle myoblast | 1.46e-16 | 43 |
muscle cell | 3.38e-16 | 55 |
electrically responsive cell | 2.61e-14 | 61 |
electrically active cell | 2.61e-14 | 61 |
embryonic cell | 6.76e-14 | 250 |
mesodermal cell | 6.98e-14 | 121 |
vascular associated smooth muscle cell | 1.40e-13 | 32 |
extraembryonic cell | 2.72e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.71e-07 | 14 |