FFCP PHASE1:Hg19::chr8:42042635..42042650,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:42042635..42042650,- to FFCP PHASE1:Hg19::chr8:42042635..42042650,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5327 | |EntrezGene=5327 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9051 | |HGNC=9051 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-4bp_to_ENST00000524261_5end | |||
|cluster_id=chr8:42042635..42042650,- | |||
|coexpression_cluster_id=C471 | |||
|description=CAGE_peak_4_at_PLAT_5end | |||
|id=chr8:42042635..42042650,- | |||
|ontology_enrichment_celltype=CL:0000192!1.31e-25!42;CL:0000514!1.31e-25!42;CL:0000183!7.42e-24!59;CL:0000680!2.77e-23!57;CL:0000056!2.77e-23!57;CL:0000355!2.77e-23!57;CL:0000187!3.05e-22!54;CL:0000359!7.54e-21!32;CL:0000393!8.70e-19!60;CL:0000211!8.70e-19!60;CL:0000222!2.66e-17!119;CL:0000055!1.23e-10!180;CL:0002539!3.80e-10!10;CL:0000220!8.11e-10!246;CL:0002321!1.39e-09!248;CL:0002681!5.91e-09!13;CL:0002584!5.91e-09!13;CL:0002595!2.89e-08!5;CL:1000449!4.47e-08!16;CL:1000612!4.20e-07!7;CL:1000746!4.20e-07!7;CL:1000497!7.43e-07!18;CL:0002518!7.43e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0002595;3.72e-26;5!CL:0000359;5.13e-17;32!CL:0000192;3.74e-14;43!CL:0002593;7.93e-12;2!CL:0002539;4.03e-08;10!CL:0002622;1.86e-07;3!CL:0000187;2.47e-07;55!CL:1000746;8.02e-07;7!CL:1000612;8.02e-07;7!CL:0002591;9.04e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002595,4.97e-26,5;CL:0000192,2.44e-17,43;CL:0000514,2.44e-17,43;CL:0000359,2.92e-17,32;CL:0000680,3.93e-14,58;CL:0000056,3.93e-14,58;CL:0000355,3.93e-14,58;CL:0000222,1.51e-13,121;CL:0000187,5.84e-13,55;CL:0002593,7.35e-12,2;CL:0000393,2.03e-11,61;CL:0000211,2.03e-11,61;CL:0002539,4.07e-08,10;CL:0002622,2.76e-07,3;CL:1000746,8.28e-07,7;CL:1000612,8.28e-07,7;CL:0002591,9.30e-07,1;CL:0002379,9.81e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000514;3.74e-14;43!CL:0000355;2.93e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;4.45e-17;3!DOID:127;4.45e-17;3!DOID:0060072;6.26e-13;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,4.47e-17,3;DOID:127,4.47e-17,3;DOID:0060072,6.28e-13,4;DOID:3620,9.81e-07,1;DOID:3565,9.81e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005256!1.82e-23!143;UBERON:0004290!1.76e-21!70;UBERON:0004573!1.84e-21!33;UBERON:0004571!1.84e-21!33;UBERON:0000914!3.16e-21!83;UBERON:0002329!3.16e-21!83;UBERON:0003077!3.16e-21!83;UBERON:0003059!3.16e-21!83;UBERON:0007282!3.16e-21!83;UBERON:0009618!3.16e-21!83;UBERON:0007285!3.16e-21!83;UBERON:0001134!6.72e-21!61;UBERON:0002036!6.72e-21!61;UBERON:0003082!6.72e-21!61;UBERON:0002385!7.93e-20!63;UBERON:0001015!7.93e-20!63;UBERON:0000383!7.93e-20!63;UBERON:0000486!1.25e-19!82;UBERON:0001637!2.92e-19!42;UBERON:0003509!2.92e-19!42;UBERON:0004572!2.92e-19!42;UBERON:0003914!2.41e-16!118;UBERON:0002049!3.96e-16!79;UBERON:0007798!3.96e-16!79;UBERON:0000119!3.88e-15!312;UBERON:0000483!4.60e-15!309;UBERON:0001981!1.08e-14!60;UBERON:0007500!1.08e-14!60;UBERON:0004537!1.08e-14!60;UBERON:0006965!1.08e-14!60;UBERON:0002100!4.65e-14!216;UBERON:0000055!1.23e-13!69;UBERON:0000490!1.96e-12!138;UBERON:0004872!3.65e-12!84;UBERON:0000481!6.38e-12!347;UBERON:0004535!1.29e-11!110;UBERON:0003104!2.04e-11!238;UBERON:0009142!2.04e-11!238;UBERON:0001135!3.56e-11!15;UBERON:0001009!5.80e-11!113;UBERON:0004237!3.80e-10!10;UBERON:0004695!3.80e-10!10;UBERON:0002111!3.80e-10!10;UBERON:0004178!3.80e-10!10;UBERON:0000947!3.92e-09!21;UBERON:0010191!3.92e-09!21;UBERON:0003064!4.87e-09!37;UBERON:0001225!5.91e-09!13;UBERON:0008987!5.91e-09!13;UBERON:0006555!1.03e-08!17;UBERON:0005103!1.03e-08!17;UBERON:0000083!1.03e-08!17;UBERON:0009201!1.03e-08!17;UBERON:0004819!1.03e-08!17;UBERON:0006553!1.03e-08!17;UBERON:0003074!1.03e-08!17;UBERON:0003060!1.03e-08!17;UBERON:0000477!1.29e-08!286;UBERON:0006554!2.13e-08!44;UBERON:0004876!2.87e-08!20;UBERON:0003834!2.89e-08!5;UBERON:0001533!2.89e-08!5;UBERON:0004211!4.47e-08!16;UBERON:0001285!4.47e-08!16;UBERON:0007684!4.47e-08!16;UBERON:0003220!4.47e-08!16;UBERON:0004208!4.47e-08!16;UBERON:0001008!4.49e-08!45;UBERON:0001851!4.73e-08!16;UBERON:0000080!4.78e-08!18;UBERON:0002120!4.78e-08!18;UBERON:0004875!4.78e-08!18;UBERON:0005721!4.78e-08!18;UBERON:0005754!4.78e-08!18;UBERON:0007297!4.78e-08!18;UBERON:0000475!1.25e-07!365;UBERON:0004111!3.54e-07!241;UBERON:0000074!4.20e-07!7;UBERON:0001229!4.20e-07!7;UBERON:0001230!4.20e-07!7;UBERON:0005749!4.20e-07!7;UBERON:0004199!4.20e-07!7;UBERON:0004209!4.20e-07!7;UBERON:0004198!4.20e-07!7;UBERON:0000025!6.93e-07!194;UBERON:0003498!7.03e-07!5;UBERON:0005985!7.03e-07!5;UBERON:0002113!7.45e-07!27;UBERON:0003918!7.45e-07!27;UBERON:0005095!7.45e-07!27;UBERON:0007687!7.45e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0003834;3.72e-26;5!UBERON:0001533;3.72e-26;5!UBERON:0003513;1.26e-18;7!UBERON:0004573;7.73e-14;33!UBERON:0004571;7.73e-14;33!UBERON:0001637;3.85e-12;42!UBERON:0003509;3.85e-12;42!UBERON:0004572;3.85e-12;42!UBERON:0002456;7.93e-12;2!UBERON:0001135;3.68e-08;15!UBERON:0004237;4.03e-08;10!UBERON:0004695;4.03e-08;10!UBERON:0002111;4.03e-08;10!UBERON:0004178;4.03e-08;10!UBERON:0000074;8.02e-07;7!UBERON:0001229;8.02e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003834,4.97e-26,5;UBERON:0001533,4.97e-26,5;UBERON:0003513,1.54e-18,7;UBERON:0007503,8.33e-17,78;UBERON:0004573,1.23e-16,33;UBERON:0004571,1.23e-16,33;UBERON:0001637,3.50e-15,42;UBERON:0003509,3.50e-15,42;UBERON:0004572,3.50e-15,42;UBERON:0001134,4.99e-13,62;UBERON:0002036,4.99e-13,62;UBERON:0003082,4.99e-13,62;UBERON:0002329,9.55e-13,71;UBERON:0003059,9.55e-13,71;UBERON:0007282,9.55e-13,71;UBERON:0004290,9.55e-13,71;UBERON:0009618,9.55e-13,71;UBERON:0002385,1.58e-12,64;UBERON:0001015,1.58e-12,64;UBERON:0000383,1.58e-12,64;UBERON:0003077,1.59e-12,72;UBERON:0007285,1.59e-12,72;UBERON:0007524,2.61e-12,73;UBERON:0000486,4.70e-12,83;UBERON:0005256,7.09e-12,122;UBERON:0002456,7.35e-12,2;UBERON:0007500,4.17e-10,59;UBERON:0001981,4.17e-10,59;UBERON:0004537,4.17e-10,59;UBERON:0006965,4.17e-10,59;UBERON:0000055,4.65e-10,68;UBERON:0002049,7.67e-10,78;UBERON:0007798,7.67e-10,78;UBERON:0003104,4.43e-09,160;UBERON:0009142,4.43e-09,160;UBERON:0003914,1.00e-08,117;UBERON:0001135,3.90e-08,15;UBERON:0004237,4.07e-08,10;UBERON:0004695,4.07e-08,10;UBERON:0002111,4.07e-08,10;UBERON:0004178,4.07e-08,10;UBERON:0000490,4.61e-08,148;UBERON:0004872,1.08e-07,83;UBERON:0004535,2.92e-07,109;UBERON:0001009,5.50e-07,112;UBERON:0010532,8.28e-07,7;UBERON:0000074,8.28e-07,7;UBERON:0001229,8.28e-07,7;UBERON:0001230,8.28e-07,7;UBERON:0003220,8.28e-07,7;UBERON:0005749,8.28e-07,7;UBERON:0004199,8.28e-07,7;UBERON:0004209,8.28e-07,7;UBERON:0004198,8.28e-07,7 | |||
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| ||
|short_description=p4@PLAT | |||
}} | }} |
Latest revision as of 07:34, 18 September 2015
Short description: | p4@PLAT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PLAT_5end |
Coexpression cluster: | C471_Smooth_Fibroblast_leiomyoma_mesenchymal_Mesothelial_meningioma_Prostate |
Association with transcript: | -4bp_to_ENST00000524261_5end |
EntrezGene: | PLAT |
HGNC: | 9051 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the subclavian artery | 4.97e-26 | 5 |
smooth muscle cell | 2.44e-17 | 43 |
smooth muscle myoblast | 2.44e-17 | 43 |
vascular associated smooth muscle cell | 2.92e-17 | 32 |
muscle precursor cell | 3.93e-14 | 58 |
myoblast | 3.93e-14 | 58 |
multi-potent skeletal muscle stem cell | 3.93e-14 | 58 |
mesodermal cell | 1.51e-13 | 121 |
muscle cell | 5.84e-13 | 55 |
smooth muscle cell of the internal thoracic artery | 7.35e-12 | 2 |
electrically responsive cell | 2.03e-11 | 61 |
electrically active cell | 2.03e-11 | 61 |
aortic smooth muscle cell | 4.07e-08 | 10 |
prostate stromal cell | 2.76e-07 | 3 |
glomerular cell | 8.28e-07 | 7 |
kidney corpuscule cell | 8.28e-07 | 7 |
smooth muscle cell of the pulmonary artery | 9.30e-07 | 1 |
meningothelial cell | 9.81e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 4.47e-17 | 3 |
leiomyoma | 4.47e-17 | 3 |
benign neoplasm | 6.28e-13 | 4 |
central nervous system cancer | 9.81e-07 | 1 |
meningioma | 9.81e-07 | 1 |