FFCP PHASE1:Hg19::chr9:5510492..5510552,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:5510492..5510552,+ to FFCP PHASE1:Hg19::chr9:5510492..5510552,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=80380 | |EntrezGene=80380 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18731 | |HGNC=18731 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BQ51 | |UniProt=Q9BQ51 | ||
|association_with_transcript=0bp_to_ENST00000397745,NM_025239,uc003zjg.3,uc011lmc.1,uc011lmd.1_5end | |||
|cluster_id=chr9:5510492..5510552,+ | |||
|coexpression_cluster_id=C2021 | |||
|description=CAGE_peak_1_at_PDCD1LG2_5end | |||
|id=chr9:5510492..5510552,+ | |||
|ontology_enrichment_celltype=CL:0000222!3.45e-21!119;CL:0000055!7.89e-18!180;CL:0000192!1.33e-14!42;CL:0000514!1.33e-14!42;CL:0000359!1.36e-14!32;CL:0000680!1.60e-14!57;CL:0000056!1.60e-14!57;CL:0000355!1.60e-14!57;CL:0000187!6.86e-14!54;CL:0002371!1.16e-13!591;CL:0000144!3.62e-12!625;CL:0000057!3.71e-12!75;CL:0000183!1.89e-11!59;CL:0000393!2.59e-10!60;CL:0000211!2.59e-10!60;CL:0000220!3.27e-10!246;CL:0000723!4.47e-10!436;CL:0000048!8.60e-10!430;CL:0002321!1.28e-09!248;CL:0002620!3.42e-09!23;CL:0000034!3.50e-08!444;CL:0000213!1.65e-07!57;CL:0000215!1.65e-07!57;CL:0002539!4.52e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.74e-14;32!CL:0000192;6.13e-11;43!CL:0002620;1.97e-09;23!CL:0000134;1.94e-08;55!CL:0000187;6.29e-08;55!CL:0002539;2.98e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,5.63e-22,121;CL:0000359,4.96e-15,32;CL:0000192,6.75e-15,43;CL:0000514,6.75e-15,43;CL:0000680,7.09e-15,58;CL:0000056,7.09e-15,58;CL:0000355,7.09e-15,58;CL:0000187,3.20e-14,55;CL:0000057,2.47e-13,76;CL:0000393,9.60e-11,61;CL:0000211,9.60e-11,61;CL:0002321,1.57e-10,250;CL:0000723,2.27e-10,433;CL:0000048,5.44e-10,427;CL:0002620,1.89e-09,23;CL:0000034,9.85e-09,441;CL:0000213,7.73e-08,58;CL:0000215,7.73e-08,58;CL:0002539,2.94e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;6.13e-11;43!CL:0000355;5.17e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;9.41e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.72e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004872!4.24e-19!84;UBERON:0000055!8.56e-18!69;UBERON:0002049!4.03e-17!79;UBERON:0007798!4.03e-17!79;UBERON:0000914!5.31e-17!83;UBERON:0002329!5.31e-17!83;UBERON:0003077!5.31e-17!83;UBERON:0003059!5.31e-17!83;UBERON:0007282!5.31e-17!83;UBERON:0009618!5.31e-17!83;UBERON:0007285!5.31e-17!83;UBERON:0001981!4.56e-16!60;UBERON:0007500!4.56e-16!60;UBERON:0004537!4.56e-16!60;UBERON:0006965!4.56e-16!60;UBERON:0004535!7.22e-16!110;UBERON:0000486!8.05e-16!82;UBERON:0001637!2.81e-15!42;UBERON:0003509!2.81e-15!42;UBERON:0004572!2.81e-15!42;UBERON:0001009!2.97e-15!113;UBERON:0004290!1.33e-14!70;UBERON:0001134!8.05e-13!61;UBERON:0002036!8.05e-13!61;UBERON:0003082!8.05e-13!61;UBERON:0004573!1.05e-12!33;UBERON:0004571!1.05e-12!33;UBERON:0002385!1.22e-12!63;UBERON:0001015!1.22e-12!63;UBERON:0000383!1.22e-12!63;UBERON:0003081!1.51e-12!216;UBERON:0002204!4.44e-11!167;UBERON:0003914!1.10e-10!118;UBERON:0005256!1.85e-10!143;UBERON:0000480!8.60e-10!626;UBERON:0000467!9.60e-10!625;UBERON:0000490!2.50e-09!138;UBERON:0000947!1.40e-08!21;UBERON:0010191!1.40e-08!21;UBERON:0003102!2.65e-08!95;UBERON:0002199!5.14e-08!45;UBERON:0002416!5.14e-08!45;UBERON:0000468!8.39e-08!659;UBERON:0002097!9.35e-08!40;UBERON:0000926!3.75e-07!448;UBERON:0004120!3.75e-07!448;UBERON:0006603!3.75e-07!448;UBERON:0004237!4.52e-07!10;UBERON:0004695!4.52e-07!10;UBERON:0002111!4.52e-07!10;UBERON:0004178!4.52e-07!10;UBERON:0001135!8.91e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.17e-12;33!UBERON:0004571;5.17e-12;33!UBERON:0001637;1.97e-11;42!UBERON:0003509;1.97e-11;42!UBERON:0004572;1.97e-11;42!UBERON:0007500;2.69e-09;56!UBERON:0001981;2.69e-09;56!UBERON:0004537;2.69e-09;56!UBERON:0000055;2.83e-09;65!UBERON:0000947;8.19e-09;21!UBERON:0010191;8.19e-09;21!UBERON:0002049;1.29e-07;75!UBERON:0007798;1.29e-07;75!UBERON:0004237;2.98e-07;10!UBERON:0004695;2.98e-07;10!UBERON:0002111;2.98e-07;10!UBERON:0004178;2.98e-07;10!UBERON:0001135;6.87e-07;15!UBERON:0002097;9.57e-07;41 | |||
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| ||
|short_description=p1@PDCD1LG2 | |||
}} | }} |
Latest revision as of 13:47, 17 September 2015
Short description: | p1@PDCD1LG2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PDCD1LG2_5end |
Coexpression cluster: | C2021_basal_mesenchymal_Dendritic_Smooth_Fibroblast_Aortic_Mallassezderived |
Association with transcript: | 0bp_to_ENST00000397745, NM_025239, uc003zjg.3, uc011lmc.1, uc011lmd.1_5end |
EntrezGene: | PDCD1LG2 |
HGNC: | 18731 |
UniProt: | Q9BQ51 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 5.63e-22 | 121 |
vascular associated smooth muscle cell | 4.96e-15 | 32 |
smooth muscle cell | 6.75e-15 | 43 |
smooth muscle myoblast | 6.75e-15 | 43 |
muscle precursor cell | 7.09e-15 | 58 |
myoblast | 7.09e-15 | 58 |
multi-potent skeletal muscle stem cell | 7.09e-15 | 58 |
muscle cell | 3.20e-14 | 55 |
fibroblast | 2.47e-13 | 76 |
electrically responsive cell | 9.60e-11 | 61 |
electrically active cell | 9.60e-11 | 61 |
embryonic cell | 1.57e-10 | 250 |
somatic stem cell | 2.27e-10 | 433 |
multi fate stem cell | 5.44e-10 | 427 |
skin fibroblast | 1.89e-09 | 23 |
stem cell | 9.85e-09 | 441 |
lining cell | 7.73e-08 | 58 |
barrier cell | 7.73e-08 | 58 |
aortic smooth muscle cell | 2.94e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.72e-07 | 14 |