FFCP PHASE1:Mm9::chr15:78004520..78004539,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr15:78004520..78004539,- to FFCP PHASE1:Mm9::chr15:78004520..78004539,-: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=67042 | |EntrezGene=67042 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=735 | |||
|TSSclassifier=NA | |||
|UniProt=Q9D0P8 | |UniProt=Q9D0P8 | ||
|association_with_transcript=0bp_to_ENSMUST00000016781,NM_025931,uc007wor.1_5end | |||
|cluster_id=chr15:78004520..78004539,- | |||
|description=CAGE_peak_4_at_Ift27_5end | |||
|id=chr15:78004520..78004539,- | |||
|ontology_enrichment_celltype=CL:0000117!2.26e-08!23;CL:0000337!2.26e-08!23;CL:0002319!3.14e-07!43;CL:0000221!3.88e-07!44;CL:0000133!3.88e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.17e-08,23;CL:0000337,2.17e-08,23;CL:0002319,3.03e-07,43;CL:0000221,3.75e-07,44;CL:0000133,3.75e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.50e-11!73;UBERON:0005743!1.50e-11!73;UBERON:0000073!2.91e-11!75;UBERON:0001016!2.91e-11!75;UBERON:0002346!3.01e-11!71;UBERON:0003075!3.01e-11!71;UBERON:0007284!3.01e-11!71;UBERON:0004121!2.30e-10!102;UBERON:0000924!2.30e-10!102;UBERON:0006601!2.30e-10!102;UBERON:0001049!4.37e-10!52;UBERON:0005068!4.37e-10!52;UBERON:0006241!4.37e-10!52;UBERON:0007135!4.37e-10!52;UBERON:0003056!8.71e-10!49;UBERON:0000033!1.04e-09!63;UBERON:0000955!5.23e-09!50;UBERON:0006238!5.23e-09!50;UBERON:0002616!7.27e-09!49;UBERON:0000153!4.69e-08!94;UBERON:0003080!1.09e-07!40;UBERON:0002780!2.77e-07!39;UBERON:0001890!2.77e-07!39;UBERON:0006240!2.77e-07!39;UBERON:0007811!6.90e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.54e-11,73;UBERON:0001016,2.98e-11,75;UBERON:0002346,4.80e-11,64;UBERON:0003075,4.80e-11,64;UBERON:0007284,4.80e-11,64;UBERON:0000073,1.07e-10,54;UBERON:0001049,4.55e-10,52;UBERON:0005068,4.55e-10,52;UBERON:0006241,4.55e-10,52;UBERON:0007135,4.55e-10,52;UBERON:0004121,8.83e-10,95;UBERON:0000924,8.83e-10,95;UBERON:0006601,8.83e-10,95;UBERON:0003056,9.09e-10,49;UBERON:0010371,1.84e-08,73;UBERON:0010314,1.96e-08,92;UBERON:0000955,2.09e-08,47;UBERON:0006238,2.09e-08,47;UBERON:0002616,2.89e-08,46;UBERON:0003080,1.14e-07,40;UBERON:0002780,2.91e-07,39;UBERON:0001890,2.91e-07,39;UBERON:0006240,2.91e-07,39 | |||
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| |phase1_expression=2.24208385946712,0,0,0,1.00179145989269,0.671517087647559,0.233612640595526,0.903863264091034,0,0,0.513653904676515,0.159544317990673,2.05440875917447,1.66098764596095,2.6648780945253,1.41732687172878,0,1.89277299214943,1.50825876966313,2.54633791078818,3.06155844543851,1.29078236561151,1.04479915655574,0.639969691173627,0.68822784320151,0,0.430761996159075,0.215471232685889,0.380046838912748,1.00812051903972,0.665191531965914,1.90509202037889,3.69038872550742,0,0.866554859253824,2.49351968037739,2.45003227514843,0.837063261473815,2.3440060335714,1.57057123192139,0.588231488031014,1.36609096991689,0,0.755380907853464,0.709638518536602,1.10128051297009,14.0830441982647,4.14247797122848,2.63623419281366,3.69416808241138,5.73944328663986,5.75010257459886,1.00669563634642,0,0.672187598284928,0.771778308107841,0.573066879877513,1.54701627683233,8.49729135610311,6.34789175126439,10.775133859605,4.40497891689872,4.4464739805557,3.5995988691256,4.94433181283487,4.2628806896766,3.29560121570245,5.76327457982332,3.83651565541367,4.3201900266141,3.15487442027073,5.42736870367227,5.07997644188711,6.61450315760752,6.90087391331302,3.67687514644008,3.30347642998166,4.72443150915195,3.5329502648936,7.51751840062105,5.6722339033494,5.2091337055676,4.4669279840221,1.68828783009504,3.36156145108982,3.83017161115768,5.83723891276322,4.84638559145781,1.4387976733305,3.32514864469856,3.47837386442013,0,0,1.07940638327563,1.29955283489534,0,0.842666520790511,1.1930122580464,0.779358013808606,0.70667914902068,2.53518155598025,0,0,0,2.16491041011214,1.01343946190039,1.01104889002957,1.25602267690966,3.36619248741323,2.3750742250372,3.81667718885499,3.34912026143355,3.68984795609694,3.01445281105245,3.29248379979973,1.63366568728578,1.23597483867187,1.01219549843938,1.76922110389975,1.29413479957927,2.20841518460394,1.93950101254089,9.31958806090611,3.22058876712702,2.72280718857492,1.02182822083437,3.11519323715393,2.99951365496704,4.57452817463033,5.54225365797844,6.8625090422794,6.53402630986895,4.69325664519146,1.79000820131231,2.49345653471472,3.56930778749067,3.56437773476107,2.36373244159177,4.0435641349388,1.89397670297827,5.98554037628437,3.21862946206862,6.12211241338187,4.06903008156431,5.10273743634959,3.71529788826064,4.96619140166563,4.13925393182425,6.89817577385095,3.78212160335639,4.75068035242662,3.28793598641362,4.44875598760957,2.43776516565517,2.05782136407943,5.37392520409932,2.1066395619397,2.57347907114715,2.84163499395593,3.52113813310353,4.45599513964083,3.24111710629827,3.31442629819294,3.73852040320067,3.5481435964097,1.86027155800326,4.02410102099429,2.56883753207773,2.30383789878873,1.80584210487005,1.78351381000883,2.04679982395465,1.3173006917463,1.61047702512446,2.3131894342054,5.04232600658494,0,1.32225283331772,6.18535926552179,4.18026009348789,3.22168653305233,4.43703754171354,2.00140239460383,4.94586627892654,1.42358718463353,1.64698954724011,2.5133520880027,0.795825888164603,2.33956904542944,2.69645822596266,1.72910439899755,1.1948476395262,10.0523987505133,4.22719496655997,10.1436962105772,4.68398054044223,4.07300223052014,3.08597607517402,2.71917109634306,3.54264355151045,1.72698600625512,1.97435462274881,0.296452627087149,4.50481785433454,4.71741588271687,4.27238013531222,4.66578279193557,3.85883455603867,2.5462585178142,5.17853047411459,1.29708181420028,2.47105271869273,0,1.11642284300551,1.24815069245824,0.757736633841335,0.538192240565737,0,2.95605104266567,3.03186258832776,3.25929952884052,2.54617628662782,4.45911471748154,1.84256883185997,1.6663054862021,1.75620283072019,1.7339865851681,2.43611158613652,2.23236676120482,1.14704320301017,1.72684981865896,1.73578870297814,0,2.17562273527484,2.45882136509518,1.93155722413313,3.05046120976805,2.10981035865966,0.491804836130026,0.504941854408746,1.26203287766503,1.95219372148319,1.72338718186239,3.58453196928828,1.55959071857676,4.24614796183249,2.02405350837447,2.33804686329049,1.18586333383957,3.53453448063988,1.98716119291576,5.34196811001766,2.93196526836437,3.62934270539578,5.30980553359851,6.31229654002952,7.86041248108353,7.92141334974772,5.90603785761546,2.76691633149535,1.29214146584111,5.08947221268508,1.42598951353889,1.58018378967908,1.05418608574999,0,3.06395645178409,4.86164953884538,7.50280365939976,6.00143698088458,6.38424841112185,4.8159580752559,5.10101963866575,7.30715877875038,1.87737366450968,1.27099242518292,2.20528398054962,2.30840754118072,0.968786560175433,2.29189114726992,1.19372344003136,0.984845398470368,2.33184669303881,2.78137953015765,2.22132145037209,2.68302928352189,2.59272338317596,3.76736914009382,3.00727300986255,2.74533807847827,2.88963330989554,2.37917468950219,2.9021994498929,0.954670618015114,6.95939185878498,2.43983360552218,3.24016022465404,2.71814784818809,2.18362563746178,1.75323650300267,1.32245529160537,1.57053565190418,1.55537967950151,1.24267862617385,21.9840246086834,4.48549638131936,4.46737924234164,3.69457257853691,3.48731523389874,2.70329800785245,2.22978753426933,1.82286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| ||
|short_description=p4@Ift27 | |||
}} | }} |
Latest revision as of 01:46, 27 September 2015
Short description: | p4@Ift27 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Ift27_5end |
Coexpression cluster: | MCL_coexpression_mm9:735 |
Association with transcript: | 0bp_to_ENSMUST00000016781, NM_025931, uc007wor.1_5end |
EntrezGene: | Ift27 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.17e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.17e-08 | 23 |
neural cell | 3.03e-07 | 43 |
ectodermal cell | 3.75e-07 | 44 |
neurectodermal cell | 3.75e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.54e-11 | 73 |
nervous system | 2.98e-11 | 75 |
neurectoderm | 4.80e-11 | 64 |
neural plate | 4.80e-11 | 64 |
presumptive neural plate | 4.80e-11 | 64 |
regional part of nervous system | 1.07e-10 | 54 |
neural tube | 4.55e-10 | 52 |
neural rod | 4.55e-10 | 52 |
future spinal cord | 4.55e-10 | 52 |
neural keel | 4.55e-10 | 52 |
ectoderm-derived structure | 8.83e-10 | 95 |
ectoderm | 8.83e-10 | 95 |
presumptive ectoderm | 8.83e-10 | 95 |
pre-chordal neural plate | 9.09e-10 | 49 |
ecto-epithelium | 1.84e-08 | 73 |
structure with developmental contribution from neural crest | 1.96e-08 | 92 |
brain | 2.09e-08 | 47 |
future brain | 2.09e-08 | 47 |
regional part of brain | 2.89e-08 | 46 |
anterior neural tube | 1.14e-07 | 40 |
regional part of forebrain | 2.91e-07 | 39 |
forebrain | 2.91e-07 | 39 |
future forebrain | 2.91e-07 | 39 |