FFCP PHASE1:Mm9::chr17:35975204..35975209,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr17:35975204..35975209,- to FFCP PHASE1:Mm9::chr17:35975204..35975209,-: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=22154 | |EntrezGene=22154 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=P99024 | |UniProt=P99024 | ||
|association_with_transcript=36bp_to_NM_011655,uc008ciq.2_5end | |||
|cluster_id=chr17:35975204..35975209,- | |||
|description=CAGE_peak_2_at_Tubb5_5end | |||
|id=chr17:35975204..35975209,- | |||
|ontology_enrichment_celltype=CL:0002319!1.28e-16!43;CL:0000221!6.49e-16!44;CL:0000133!6.49e-16!44;CL:0000540!2.66e-15!33;CL:0000047!2.66e-15!33;CL:0000031!2.66e-15!33;CL:0000404!2.66e-15!33;CL:0000117!3.26e-14!23;CL:0000337!3.26e-14!23;CL:0000055!1.97e-13!50;CL:0000393!9.77e-13!39;CL:0000211!9.77e-13!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.28e-16,43;CL:0000221,6.47e-16,44;CL:0000133,6.47e-16,44;CL:0000540,2.65e-15,33;CL:0000047,2.65e-15,33;CL:0000031,2.65e-15,33;CL:0000404,2.65e-15,33;CL:0000117,3.25e-14,23;CL:0000337,3.25e-14,23;CL:0000393,9.75e-13,39;CL:0000211,9.75e-13,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.05e-22!75;UBERON:0001016!4.05e-22!75;UBERON:0001017!5.15e-22!73;UBERON:0005743!5.15e-22!73;UBERON:0002346!5.47e-16!71;UBERON:0003075!5.47e-16!71;UBERON:0007284!5.47e-16!71;UBERON:0001049!1.62e-15!52;UBERON:0005068!1.62e-15!52;UBERON:0006241!1.62e-15!52;UBERON:0007135!1.62e-15!52;UBERON:0004121!1.74e-15!102;UBERON:0000924!1.74e-15!102;UBERON:0006601!1.74e-15!102;UBERON:0002020!6.51e-14!34;UBERON:0002616!1.43e-13!49;UBERON:0000955!2.05e-13!50;UBERON:0006238!2.05e-13!50;UBERON:0003056!3.94e-12!49;UBERON:0003080!1.12e-11!40;UBERON:0002780!1.87e-11!39;UBERON:0001890!1.87e-11!39;UBERON:0006240!1.87e-11!39;UBERON:0000033!2.08e-11!63;UBERON:0002791!6.67e-11!29;UBERON:0003528!6.67e-11!29;UBERON:0001893!6.67e-11!29;UBERON:0000956!1.50e-07!21;UBERON:0001869!1.50e-07!21;UBERON:0000203!1.50e-07!21;UBERON:0000153!8.26e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.03e-22,75;UBERON:0001017,5.14e-22,73;UBERON:0002346,3.26e-17,64;UBERON:0003075,3.26e-17,64;UBERON:0007284,3.26e-17,64;UBERON:0000073,1.46e-16,54;UBERON:0004121,3.76e-16,95;UBERON:0000924,3.76e-16,95;UBERON:0006601,3.76e-16,95;UBERON:0001049,1.62e-15,52;UBERON:0005068,1.62e-15,52;UBERON:0006241,1.62e-15,52;UBERON:0007135,1.62e-15,52;UBERON:0002020,6.49e-14,34;UBERON:0002616,1.67e-12,46;UBERON:0010371,2.39e-12,73;UBERON:0000955,2.39e-12,47;UBERON:0006238,2.39e-12,47;UBERON:0003056,3.94e-12,49;UBERON:0010314,6.83e-12,92;UBERON:0003080,1.12e-11,40;UBERON:0002780,1.86e-11,39;UBERON:0001890,1.86e-11,39;UBERON:0006240,1.86e-11,39;UBERON:0003528,6.66e-11,29;UBERON:0002791,6.66e-11,29;UBERON:0001893,6.66e-11,29;UBERON:0000956,1.50e-07,21;UBERON:0001869,1.50e-07,21;UBERON:0000203,1.50e-07,21 | |||
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| ||
|short_description=p2@Tubb5 | |||
}} | }} |
Latest revision as of 10:42, 26 September 2015
Short description: | p2@Tubb5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Tubb5_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 36bp_to_NM_011655, uc008ciq.2_5end |
EntrezGene: | Tubb5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.28e-16 | 43 |
ectodermal cell | 6.47e-16 | 44 |
neurectodermal cell | 6.47e-16 | 44 |
neuron | 2.65e-15 | 33 |
neuronal stem cell | 2.65e-15 | 33 |
neuroblast | 2.65e-15 | 33 |
electrically signaling cell | 2.65e-15 | 33 |
CNS neuron (sensu Vertebrata) | 3.25e-14 | 23 |
neuroblast (sensu Vertebrata) | 3.25e-14 | 23 |
electrically responsive cell | 9.75e-13 | 39 |
electrically active cell | 9.75e-13 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.03e-22 | 75 |
central nervous system | 5.14e-22 | 73 |
neurectoderm | 3.26e-17 | 64 |
neural plate | 3.26e-17 | 64 |
presumptive neural plate | 3.26e-17 | 64 |
regional part of nervous system | 1.46e-16 | 54 |
ectoderm-derived structure | 3.76e-16 | 95 |
ectoderm | 3.76e-16 | 95 |
presumptive ectoderm | 3.76e-16 | 95 |
neural tube | 1.62e-15 | 52 |
neural rod | 1.62e-15 | 52 |
future spinal cord | 1.62e-15 | 52 |
neural keel | 1.62e-15 | 52 |
gray matter | 6.49e-14 | 34 |
regional part of brain | 1.67e-12 | 46 |
ecto-epithelium | 2.39e-12 | 73 |
brain | 2.39e-12 | 47 |
future brain | 2.39e-12 | 47 |
pre-chordal neural plate | 3.94e-12 | 49 |
structure with developmental contribution from neural crest | 6.83e-12 | 92 |
anterior neural tube | 1.12e-11 | 40 |
regional part of forebrain | 1.86e-11 | 39 |
forebrain | 1.86e-11 | 39 |
future forebrain | 1.86e-11 | 39 |
brain grey matter | 6.66e-11 | 29 |
regional part of telencephalon | 6.66e-11 | 29 |
telencephalon | 6.66e-11 | 29 |
cerebral cortex | 1.50e-07 | 21 |
cerebral hemisphere | 1.50e-07 | 21 |
pallium | 1.50e-07 | 21 |