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{{f5samples
{{f5samples
|id=FF:10845-111E8
|DRA_sample_Accession=CAGE@SAMD00005137
|name=mesothelioma cell line:NCI-H28
|accession_numbers=CAGE;DRX007949;DRR008821;DRZ000246;DRZ001631;DRZ011596;DRZ012981
|sample_id=10845
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|rna_tube_id=111E8
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000057,CL:0000077
|rna_box=111
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115
|rna_position=E8
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100453,FF:0100400,FF:0100460,FF:0102424,FF:0103764
|sample_cell_lot=
|comment=
|sample_cell_catalog=CRL5820
|created_by=
|sample_company=ATCC
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr17:36105042..36105060,-!p1@HNF1B!2.12!130.43!HNF1B;;chr1:201979743..201979762,+!p1@ELF3!2.00!99.42!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.88!74.05!ELF3;;chr3:69915385..69915438,+!p3@MITF!1.84!67.65!MITF;;chr2:114036488..114036504,-!p1@PAX8!1.79!61.24!PAX8;;chr3:69915369..69915381,+!p4@MITF!1.68!47.40!MITF;;chr3:69812798..69812824,+!p8@MITF!1.60!38.44!MITF;;chr3:69812745..69812760,+!p10@MITF!1.45!27.16!MITF;;chr3:69812701..69812729,+!p9@MITF!1.40!24.34!MITF;;chr7:28448965..28448994,+!p2@CREB5!1.38!78.67!CREB5;;chr11:61520075..61520136,+!p1@C11orf9!1.38!47.66!C11orf9;;chr6:19837592..19837621,+!p1@ID4!1.36!129.15!ID4;;chr3:69812731..69812742,+!p19@MITF!1.32!19.73!MITF;;chr6:10412600..10412637,-!p1@TFAP2A!1.27!28.96!TFAP2A;;chr9:126774018..126774055,+!p1@LHX2!1.23!15.89!LHX2;;chr3:141043020..141043049,+!p17@ZBTB38!1.19!14.61!ZBTB38;;chr18:55102598..55102623,+!p1@ONECUT2!1.19!14.35!ONECUT2;;chr10:102505493..102505546,+!p2@PAX2!1.17!13.84!PAX2;;chr5:124082322..124082364,-!p1@ZNF608!1.12!31.01!ZNF608;;chr7:28452130..28452154,+!p10@CREB5!1.12!12.04!CREB5;;chr4:87928142..87928165,+!p5@AFF1!1.09!38.69!AFF1;;chr3:69812649..69812658,+!p20@MITF!1.09!11.27!MITF;;chr3:69812764..69812775,+!p18@MITF!1.07!10.76!MITF;;chr4:87928166..87928186,+!p12@AFF1!1.06!16.40!AFF1;;chr8:76319876..76319926,+!p1@HNF4G!1.02!9.48!HNF4G;;chr12:100867653..100867677,+!p2@NR1H4!1.02!9.48!NR1H4;;chr3:69812852..69812864,+!p17@MITF!1.00!8.97!MITF;;chr9:4300050..4300118,-!p1@GLIS3!0.99!57.91!GLIS3;;chr6:10415276..10415341,-!p2@TFAP2A!0.99!10.76!TFAP2A;;chr3:69811858..69811881,+!p5@MITF!0.99!8.71!MITF;;chr18:55102628..55102646,+!p2@ONECUT2!0.99!8.71!ONECUT2;;chr3:141043050..141043063,+!p22@ZBTB38!0.98!8.46!ZBTB38;;chr17:79881332..79881348,-!p3@MAFG!0.97!12.30!MAFG;;chr5:176738887..176738934,-!p1@MXD3!0.96!55.60!MXD3;;chr3:170076314..170076334,+!p2@SKIL!0.96!10.76!SKIL;;chr16:51185172..51185197,-!p1@SALL1!0.96!8.20!SALL1;;chrY:21906594..21906622,-!p1@KDM5D!0.95!7.94!KDM5D;;chr5:124081979..124082021,-!p7@ZNF608!0.94!7.69!ZNF608;;chr5:174151553..174151610,+!p1@MSX2!0.92!12.56!MSX2;;chr17:46703687..46703740,-!p1@HOXB9!0.91!7.17!HOXB9;;chr13:41593425..41593480,-!p1@ELF1!0.88!43.82!ELF1;;chr11:706938..707008,-!p3@DEAF1!0.88!8.46!DEAF1;;chr12:100867627..100867652,+!p1@NR1H4!0.88!6.66!NR1H4;;chr7:156803329..156803362,-!p1@MNX1!0.88!6.66!MNX1;;chr10:51572408..51572454,+!p3@NCOA4!0.87!39.20!NCOA4;;chr5:124082279..124082319,-!p3@ZNF608!0.87!7.94!ZNF608;;chr6:10412392..10412409,-!p4@TFAP2A!0.86!7.17!TFAP2A;;chr20:30193083..30193098,+!p1@ID1!0.85!521.71!ID1;;chr15:67357924..67357952,+!p2@SMAD3!0.85!43.05!SMAD3;;chr3:69812877..69812886,+!p22@MITF!0.85!6.15!MITF;;chr4:87928105..87928126,+!p13@AFF1!0.84!9.22!AFF1;;chr11:120107344..120107351,+!p1@POU2F3!0.83!7.17!POU2F3;;chr6:21593973..21593988,+!p1@SOX4!0.82!218.32!SOX4;;chr2:242556880..242556899,-!p5@THAP4!0.82!5.64!THAP4;;chr3:24536253..24536328,-!p1@THRB!0.81!10.76!THRB;;chr16:54320646..54320672,-!p2@IRX3!0.81!8.71!IRX3;;chr7:28725740..28725778,+!p1@CREB5!0.80!51.76!CREB5;;chr2:63277948..63277974,+!p1@OTX1!0.80!5.38!OTX1;;chr17:36104873..36104903,-!p3@HNF1B!0.80!5.38!HNF1B;;chr1:151804244..151804310,-!p1@RORC!0.80!5.38!RORC;;chr5:76383133..76383186,-!p2@ZBED3!0.79!11.27!ZBED3;;chr5:76383070..76383117,-!p3@ZBED3!0.79!11.02!ZBED3;;chr5:174151612..174151633,+!p2@MSX2!0.79!5.12!MSX2;;chr16:54320617..54320643,-!p3@IRX3!0.78!6.66!IRX3;;chr15:66994561..66994597,+!p2@SMAD6!0.77!12.56!SMAD6;;chr15:66994615..66994630,+!p3@SMAD6!0.77!7.17!SMAD6;;chr17:36105074..36105086,-!p2@HNF1B!0.77!4.87!HNF1B;;chr7:101917407..101917443,+!p3@CUX1!0.77!4.87!CUX1;;chr2:8822176..8822196,+!p1@ID2!0.75!716.20!ID2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.75!50.99!GLIS2;;chr5:124080203..124080258,-!p5@ZNF608!0.75!5.38!ZNF608;;chr20:22564895..22564910,-!p1@FOXA2!0.75!4.61!FOXA2;;chr2:176994408..176994492,+!p1@HOXD8!0.75!4.61!HOXD8;;chr7:128577972..128578047,+!p1@IRF5!0.73!7.17!IRF5;;chr5:172662197..172662216,-!p1@NKX2-5!0.73!4.36!NKX2-5;;chr19:58373157..58373159,+!p4@ZNF587!0.72!8.20!ZNF587;;chrX:129402866..129402880,-!p1@ZNF280C!0.71!26.65!ZNF280C;;chr1:41174988..41175047,+!p4@NFYC!0.71!12.04!NFYC;;chr11:63684602..63684664,-!p1@RCOR2!0.71!8.71!RCOR2;;chr6:21597514..21597578,+!p4@SOX4!0.71!7.43!SOX4;;chr3:12330560..12330579,+!p1@PPARG!0.71!4.87!PPARG;;chr5:124082470..124082483,-!p8@ZNF608!0.71!4.10!ZNF608;;chr6:21597765..21597779,+!p2@SOX4!0.70!36.90!SOX4;;chr3:69788576..69788648,+!p1@MITF!0.69!23.57!MITF;;chr2:122042770..122042785,-!p1@TFCP2L1!0.69!3.84!TFCP2L1;;chr17:48045917..48045977,+!p1@DLX4!0.69!3.84!DLX4;;chr12:80084279..80084293,-!p8@PAWR!0.68!6.66!PAWR;;chr3:101546827..101546847,+!p2@NFKBIZ!0.68!5.64!NFKBIZ;;chr4:87857474..87857489,+!p7@AFF1!0.67!6.92!AFF1;;chr12:80083544..80083558,-!p13@PAWR!0.67!4.87!PAWR;;chr16:1429627..1429662,-!p2@UNKL!0.66!11.79!UNKL;;chr7:28725715..28725727,+!p3@CREB5!0.66!4.36!CREB5;;chr13:41593493..41593506,-!p8@ELF1!0.66!3.59!ELF1;;chr3:69811882..69811898,+!p6@MITF!0.66!3.59!MITF;;chr12:80084167..80084197,-!p5@PAWR!0.65!8.97!PAWR;;chr9:4300016..4300039,-!p2@GLIS3!0.65!6.41!GLIS3;;chr19:23433144..23433204,-!p1@ZNF724P!0.64!17.68!ZNF724P;;chr16:29818199..29818216,+!p11@MAZ!0.64!5.89!MAZ;;chr1:203764633..203764674,+!p2@ZC3H11A!0.64!5.89!ZC3H11A;;chr9:130966497..130966541,-!p4@CIZ1!0.64!3.33!CIZ1;;chr2:16080659..16080685,+!p1@MYCN!0.64!3.33!MYCN;;chr12:19592405..19592492,+!p2@AEBP2!0.63!33.31!AEBP2;;chr9:99180617..99180658,-!p1@ZNF367!0.63!7.94!ZNF367;;chr2:178128199..178128245,-!p3@NFE2L2!0.62!19.99!NFE2L2;;chr12:80084137..80084165,-!p10@PAWR!0.62!4.36!PAWR;;chr16:29818160..29818188,+!p6@MAZ!0.61!16.91!MAZ;;chr15:66994663..66994680,+!p1@SMAD6!0.61!8.20!SMAD6;;chr4:87968291..87968314,+!p14@AFF1!0.61!4.36!AFF1;;chr2:5832508..5832524,+!p1@SOX11!0.61!3.07!SOX11;;chr2:73144617..73144654,+!p1@EMX1!0.61!3.07!EMX1;;chr3:24536231..24536249,-!p4@THRB!0.61!3.07!THRB;;chr3:69811826..69811835,+!p16@MITF!0.61!3.07!MITF;;chr11:31832658..31832681,-!p1@PAX6!0.61!3.07!PAX6;;chr16:54319010..54319041,-!p8@IRX3!0.61!3.07!IRX3;;chr7:27153454..27153469,-!p2@HOXA3!0.61!3.07!HOXA3;;chr12:80084737..80084763,-!p3@PAWR!0.60!13.07!PAWR;;chr5:150284532..150284549,-!p1@ZNF300!0.60!6.92!ZNF300;;chr6:21597600..21597664,+!p3@SOX4!0.60!5.38!SOX4;;chr9:4299979..4299996,-!p3@GLIS3!0.60!5.38!GLIS3;;chr2:169312600..169312606,+!p2@CERS6!0.60!5.12!CERS6;;chr16:54964740..54964789,+!p1@IRX5!0.60!4.61!IRX5;;chr17:46688334..46688385,-!p1@HOXB7!0.60!4.61!HOXB7;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.59!15.89!TAL1;;chr7:28448995..28449011,+!p4@CREB5!0.59!4.36!CREB5;;chr15:80696703..80696754,+!p1@ARNT2!0.59!4.10!ARNT2;;chr19:21264991..21265026,+!p1@ZNF714!0.58!22.55!ZNF714;;chr8:77593474..77593612,+!p1@ZFHX4!0.58!14.09!ZFHX4;;chr12:51566562..51566584,-!p2@TFCP2!0.58!9.22!TFCP2;;chr2:172967621..172967637,-!p1@DLX2!0.58!8.71!DLX2;;chr16:51185318..51185348,-!p2@SALL1!0.58!2.82!SALL1;;chr17:46132044..46132080,+!p4@NFE2L1!0.58!2.82!NFE2L1;;chrY:2803415..2803468,+!p1@ZFY!0.58!2.82!ZFY;;chr14:38064429..38064486,-!p1@FOXA1!0.58!2.82!FOXA1;;chr5:124082428..124082439,-!p16@ZNF608!0.58!2.82!ZNF608;;chr8:11561684..11561751,+!p1@GATA4!0.58!2.82!GATA4;;chr19:22034809..22034878,-!p2@ZNF43!0.57!11.27!ZNF43;;chr6:21597370..21597408,+!p5@SOX4!0.57!4.87!SOX4;;chr4:87968203..87968221,+!p11@AFF1!0.57!4.87!AFF1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.56!174.76!NFKBIZ;;chr8:28243813..28243839,-!p4@ZNF395!0.56!5.38!ZNF395;;chr9:77112244..77112262,+!p1@RORB!0.56!3.07!RORB;;chr3:114343826..114343869,-!p4@ZBTB20!0.55!5.89!ZBTB20;;chr5:134369905..134369972,-!p1@PITX1!0.55!4.36!PITX1;;chr5:172662230..172662241,-!p3@NKX2-5!0.55!2.56!NKX2-5;;chr17:46703528..46703549,-!p5@HOXB9!0.55!2.56!HOXB9;;chr17:79881433..79881452,-!p6@MAFG!0.55!2.56!MAFG;;chr2:191906489..191906517,-!p6@STAT4!0.55!2.56!STAT4;;chr3:138665937..138665968,-!p1@FOXL2!0.55!2.56!FOXL2;;chr10:102505954..102505973,+!p3@PAX2!0.55!2.56!PAX2;;chr12:100897130..100897149,+!p3@NR1H4!0.55!2.56!NR1H4;;chr13:100623375..100623425,-!p1@ZIC5!0.55!2.56!ZIC5;;chr17:7590797..7590815,-!p1@TP53!0.54!138.37!TP53;;chr19:9695195..9695221,-!p2@ZNF121!0.54!36.13!ZNF121;;chr9:109625401..109625458,+!p1@ZNF462!0.54!7.69!ZNF462;;chr18:56532100..56532130,+!p1@ZNF532!0.54!5.12!ZNF532;;chr17:41277372..41277418,-!p1@BRCA1!0.53!10.76!BRCA1;;chr2:148778973..148779035,+!p3@MBD5!0.53!7.43!MBD5;;chr4:87967906..87967931,+!p15@AFF1!0.53!3.59!AFF1;;chr5:124082580..124082603,-!p4@ZNF608!0.53!2.82!ZNF608;;chr20:42295745..42295765,+!p1@MYBL2!0.52!49.45!MYBL2;;chr2:242576431..242576458,-!p3@THAP4!0.52!6.66!THAP4;;chr16:54320675..54320715,-!p1@IRX3!0.52!5.89!IRX3;;chr13:37494365..37494381,-!p1@SMAD9!0.52!4.61!SMAD9;;chr16:54320101..54320125,-!p4@IRX3!0.52!3.59!IRX3;;chr12:80083807..80083859,-!p11@PAWR!0.52!3.07!PAWR;;chr6:10412576..10412599,-!p5@TFAP2A!0.52!2.31!TFAP2A;;chr15:66994885..66994904,+!p7@SMAD6!0.52!2.31!SMAD6;;chr19:22034784..22034801,-!p4@ZNF43!0.52!2.31!ZNF43;;chr2:242556900..242556916,-!p6@THAP4!0.52!2.31!THAP4;;chr3:24536332..24536358,-!p2@THRB!0.52!2.31!THRB;;chr14:74226961..74227020,-!p1@C14orf43!0.51!18.71!C14orf43;;chr19:58361185..58361235,+!p2@ZNF587!0.51!15.37!ZNF587;;chr19:11849700..11849803,-!p1@ZNF823!0.51!13.84!ZNF823;;chr4:87857433..87857472,+!p9@AFF1!0.51!4.61!AFF1;;chr2:191878812..191878823,-!p2@STAT1!0.51!3.07!STAT1;;chr9:137217986..137218049,+!p3@RXRA!0.50!7.69!RXRA;;chr19:22018938..22018963,-!p3@ZNF43!0.50!6.15!ZNF43;;chr13:72441315..72441454,-!p1@DACH1!0.50!5.12!DACH1;;chr5:72744445..72744466,-!p2@FOXD1!0.50!4.10!FOXD1;;chr9:4299959..4299974,-!p4@GLIS3!0.50!3.84!GLIS3;;chr8:67525443..67525459,-!p2@MYBL1!0.50!3.59!MYBL1;;chr18:46475696..46475713,-!p1@SMAD7!0.50!2.56!SMAD7;;chr5:138609782..138609826,+!p5@MATR3!0.49!17.68!MATR3;;chr12:80084303..80084332,-!p1@PAWR!0.49!16.14!PAWR;;chr19:37096139..37096170,-!p2@ZNF529!0.49!7.17!ZNF529;;chr12:125002827..125002855,-!p5@NCOR2!0.49!3.33!NCOR2;;chr3:32023232..32023273,+!p1@ZNF860!0.49!3.33!ZNF860;;chr14:74226833..74226845,-!p7@C14orf43!0.49!3.0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|sample_dev_stage=
|ffid_belonging_in_development=CL:0000134,CL:0000222
|sample_tissue=mesothelium
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=48
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=2.07
|rna_od260/280=2.06
|sample_cell_type=mesothelial cell
|sample_cell_line=NCI-H28
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=mesothelioma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=94.935
|rna_concentration=1.2658
|sample_note=
|profile_hcage=CNhs13061,LSID1000,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000066,CL:0000076,CL:0000077,CL:0000134,CL:0000144,CL:0000213,CL:0000215,CL:0000219,CL:0000220,CL:0000222,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|ancestors_in_disease_facet=DOID:0050687,DOID:1115,DOID:14566,DOID:162,DOID:4,DOID:7
|sample_description=
|fonse_cell_line=FF:0100400,FF:0100453,FF:0102424
|fonse_cell_line=FF:0100400,FF:0100453,FF:0102424
|fonse_cell_line_closure=FF:0100400,FF:0100453,FF:0102424
|fonse_cell_line_closure=FF:0100400,FF:0100453,FF:0102424
Line 66: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0102424;;FF:0103764
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H28.CNhs13061.10845-111E8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H28.CNhs13061.10845-111E8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H28.CNhs13061.10845-111E8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H28.CNhs13061.10845-111E8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H28.CNhs13061.10845-111E8.hg38.nobarcode.ctss.bed.gz
|id=FF:10845-111E8
|is_a=EFO:0002091;;FF:0000210;;FF:0102424;;FF:0103764
|is_obsolete=
|library_id=CNhs13061
|library_id_phase_based=2:CNhs13061
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10845
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10845
|name=mesothelioma cell line:NCI-H28
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
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|profile_hcage=CNhs13061,LSID1000,release012,COMPLETED
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=111
|rna_catalog_number=
|rna_concentration=1.2658
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.07
|rna_od260/280=2.06
|rna_position=E8
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=1.11E+10
|rna_weight_ug=94.935
|sample_age=48
|sample_category=cell lines
|sample_cell_catalog=CRL5820
|sample_cell_line=NCI-H28
|sample_cell_lot=
|sample_cell_type=mesothelial cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=ATCC
|sample_description=
|sample_dev_stage=
|sample_disease=mesothelioma
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.37340775922332e-264!GO:0043226;organelle;2.89442480085241e-224!GO:0043229;intracellular organelle;8.41647560668846e-224!GO:0043231;intracellular membrane-bound organelle;6.26934117264531e-222!GO:0043227;membrane-bound organelle;6.26934117264531e-222!GO:0005737;cytoplasm;3.6468377585962e-176!GO:0044422;organelle part;8.36795402815509e-164!GO:0044446;intracellular organelle part;4.24188041244868e-162!GO:0044444;cytoplasmic part;1.83987093536954e-130!GO:0032991;macromolecular complex;7.30363690764771e-112!GO:0044237;cellular metabolic process;1.20706019435431e-107!GO:0044238;primary metabolic process;1.59094530017314e-102!GO:0005634;nucleus;5.88806093677145e-100!GO:0030529;ribonucleoprotein complex;3.1397721765074e-98!GO:0043170;macromolecule metabolic process;9.40153660231686e-97!GO:0044428;nuclear part;9.77313612566764e-89!GO:0003723;RNA binding;1.11418587124087e-85!GO:0043233;organelle lumen;3.0204016164491e-84!GO:0031974;membrane-enclosed lumen;3.0204016164491e-84!GO:0005739;mitochondrion;1.87114255655239e-81!GO:0005515;protein binding;1.85647659703657e-66!GO:0006396;RNA processing;6.14078625268987e-61!GO:0005840;ribosome;7.01484428062218e-58!GO:0043283;biopolymer metabolic process;1.44178739040333e-57!GO:0044429;mitochondrial part;9.37408822735443e-57!GO:0043234;protein complex;1.01831516085265e-55!GO:0006412;translation;1.14229864352149e-54!GO:0019538;protein metabolic process;3.61219417207002e-53!GO:0031090;organelle membrane;1.01789829971689e-52!GO:0010467;gene expression;1.81584714957939e-52!GO:0031981;nuclear lumen;2.99967275904715e-52!GO:0003735;structural constituent of ribosome;3.09613047749141e-51!GO:0016043;cellular component organization and biogenesis;2.82980051126769e-50!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.16675010302835e-50!GO:0031967;organelle envelope;6.20432302208004e-50!GO:0031975;envelope;9.13667444273976e-50!GO:0044260;cellular macromolecule metabolic process;3.37778357819357e-47!GO:0044267;cellular protein metabolic process;3.40497178567013e-47!GO:0016071;mRNA metabolic process;4.61509241799908e-46!GO:0033036;macromolecule localization;1.26537451134884e-44!GO:0033279;ribosomal subunit;2.38218534257012e-44!GO:0015031;protein transport;2.40339985158791e-44!GO:0008380;RNA splicing;4.14732488973788e-44!GO:0044249;cellular biosynthetic process;5.75150954820759e-44!GO:0009058;biosynthetic process;1.20179100009702e-43!GO:0009059;macromolecule biosynthetic process;4.58358923506996e-42!GO:0005829;cytosol;7.74364494700014e-41!GO:0008104;protein localization;2.07728637886789e-40!GO:0006397;mRNA processing;2.93447559873252e-40!GO:0043228;non-membrane-bound organelle;9.14648651184364e-40!GO:0043232;intracellular non-membrane-bound organelle;9.14648651184364e-40!GO:0045184;establishment of protein localization;1.14881475014246e-39!GO:0046907;intracellular transport;1.6298986537431e-37!GO:0006996;organelle organization and biogenesis;6.27395189592174e-36!GO:0005740;mitochondrial envelope;2.73208590963257e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.40854542452786e-34!GO:0006259;DNA metabolic process;4.48454099669892e-34!GO:0019866;organelle inner membrane;7.70058378855662e-34!GO:0000166;nucleotide binding;1.84611129643721e-33!GO:0031966;mitochondrial membrane;2.3307621199689e-33!GO:0003676;nucleic acid binding;4.53181620911251e-33!GO:0065003;macromolecular complex assembly;5.14662346401404e-33!GO:0005654;nucleoplasm;2.02784081910834e-31!GO:0005743;mitochondrial inner membrane;3.66315281748008e-31!GO:0005681;spliceosome;4.64552738827706e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.86952548527923e-31!GO:0006886;intracellular protein transport;1.11361825135195e-29!GO:0022607;cellular component assembly;2.72759162835422e-29!GO:0007049;cell cycle;2.79117237910931e-29!GO:0044445;cytosolic part;2.37375710021418e-26!GO:0006974;response to DNA damage stimulus;1.84563570158144e-25!GO:0006119;oxidative phosphorylation;2.05745353719696e-25!GO:0051649;establishment of cellular localization;5.83105067356467e-25!GO:0016070;RNA metabolic process;1.1846850299292e-24!GO:0031980;mitochondrial lumen;1.48663269588911e-24!GO:0005759;mitochondrial matrix;1.48663269588911e-24!GO:0051641;cellular localization;1.90032017520777e-24!GO:0044451;nucleoplasm part;2.16911690114227e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.3745768674645e-24!GO:0016462;pyrophosphatase activity;2.54036829154642e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;2.91327362159147e-24!GO:0044455;mitochondrial membrane part;4.60027360070635e-24!GO:0017111;nucleoside-triphosphatase activity;7.81496174511288e-24!GO:0032553;ribonucleotide binding;2.62867567916778e-23!GO:0032555;purine ribonucleotide binding;2.62867567916778e-23!GO:0015934;large ribosomal subunit;8.51693321878854e-23!GO:0017076;purine nucleotide binding;1.12318467293636e-22!GO:0005730;nucleolus;1.17694739348961e-22!GO:0015935;small ribosomal subunit;1.22425983731301e-22!GO:0000278;mitotic cell cycle;5.41838272202865e-22!GO:0016874;ligase activity;2.36669081368976e-21!GO:0022402;cell cycle process;2.38134839213351e-21!GO:0006281;DNA repair;2.69903611361135e-21!GO:0044265;cellular macromolecule catabolic process;7.58699773240534e-21!GO:0012505;endomembrane system;1.80019277745478e-20!GO:0032559;adenyl ribonucleotide binding;2.26785278163053e-20!GO:0051186;cofactor metabolic process;2.59539455512502e-20!GO:0005524;ATP binding;3.03750304848859e-20!GO:0022618;protein-RNA complex assembly;5.55731714720768e-20!GO:0005746;mitochondrial respiratory chain;6.33131010537305e-20!GO:0006457;protein folding;8.05134389042198e-20!GO:0030554;adenyl nucleotide binding;1.65798173521719e-19!GO:0006512;ubiquitin cycle;3.64540538149586e-19!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.119753018122e-19!GO:0000087;M phase of mitotic cell cycle;5.93404994805814e-18!GO:0007067;mitosis;9.57219748009592e-18!GO:0005761;mitochondrial ribosome;1.31946685214104e-17!GO:0000313;organellar ribosome;1.31946685214104e-17!GO:0044248;cellular catabolic process;1.35854689953551e-17!GO:0009719;response to endogenous stimulus;1.39837543464445e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.6634627294285e-17!GO:0003954;NADH dehydrogenase activity;1.6634627294285e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.6634627294285e-17!GO:0008135;translation factor activity, nucleic acid binding;3.33304434167035e-17!GO:0016887;ATPase activity;3.59700088969733e-17!GO:0009057;macromolecule catabolic process;3.8391674068261e-17!GO:0005694;chromosome;4.55651803048612e-17!GO:0006511;ubiquitin-dependent protein catabolic process;5.77274241353483e-17!GO:0042623;ATPase activity, coupled;5.85472563693997e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;6.65499339414039e-17!GO:0022403;cell cycle phase;8.7589534738175e-17!GO:0019941;modification-dependent protein catabolic process;8.81018151654832e-17!GO:0043632;modification-dependent macromolecule catabolic process;8.81018151654832e-17!GO:0043412;biopolymer modification;9.21460220502782e-17!GO:0044257;cellular protein catabolic process;1.20124735323396e-16!GO:0043285;biopolymer catabolic process;1.97734069389554e-16!GO:0006732;coenzyme metabolic process;2.30047117457184e-16!GO:0048770;pigment granule;2.90652270232834e-16!GO:0042470;melanosome;2.90652270232834e-16!GO:0008134;transcription factor binding;3.13029879109611e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.78344929972319e-16!GO:0051301;cell division;4.44962721672387e-16!GO:0042775;organelle ATP synthesis coupled electron transport;4.93189700276764e-16!GO:0042773;ATP synthesis coupled electron transport;4.93189700276764e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;5.21329770226782e-16!GO:0000375;RNA splicing, via transesterification reactions;5.21329770226782e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.21329770226782e-16!GO:0005635;nuclear envelope;5.49897409267645e-16!GO:0006260;DNA replication;5.80241566637907e-16!GO:0030964;NADH dehydrogenase complex (quinone);9.30462725869756e-16!GO:0045271;respiratory chain complex I;9.30462725869756e-16!GO:0005747;mitochondrial respiratory chain complex I;9.30462725869756e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.13170067869183e-15!GO:0042254;ribosome biogenesis and assembly;2.8357386113455e-15!GO:0006605;protein targeting;2.8357386113455e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.05531346714564e-15!GO:0031965;nuclear membrane;3.83642708051719e-15!GO:0000502;proteasome complex (sensu Eukaryota);5.74795601102465e-15!GO:0044427;chromosomal part;7.45983685569736e-15!GO:0044453;nuclear membrane part;7.70962684825904e-15!GO:0000279;M phase;1.07845298701705e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.13446971619477e-14!GO:0051082;unfolded protein binding;1.23987769254251e-14!GO:0006464;protein modification process;1.37488359381931e-14!GO:0006399;tRNA metabolic process;2.25906613296703e-14!GO:0005783;endoplasmic reticulum;7.73581395321922e-14!GO:0051276;chromosome organization and biogenesis;1.46215851188421e-13!GO:0009055;electron carrier activity;3.49087983688445e-13!GO:0030163;protein catabolic process;5.01715100746667e-13!GO:0005643;nuclear pore;5.39915861582642e-13!GO:0005794;Golgi apparatus;6.36856600149845e-13!GO:0003743;translation initiation factor activity;9.69340359153729e-13!GO:0016604;nuclear body;9.85394845604758e-13!GO:0043687;post-translational protein modification;1.41181058384239e-12!GO:0004386;helicase activity;2.54263476557481e-12!GO:0006413;translational initiation;3.11294024225403e-12!GO:0048193;Golgi vesicle transport;3.6792493028319e-12!GO:0006461;protein complex assembly;1.20617288838442e-11!GO:0006403;RNA localization;1.39013937990752e-11!GO:0065002;intracellular protein transport across a membrane;1.54431779721563e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.2045543055736e-11!GO:0004812;aminoacyl-tRNA ligase activity;2.2045543055736e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.2045543055736e-11!GO:0012501;programmed cell death;2.2045543055736e-11!GO:0016192;vesicle-mediated transport;2.22923282626319e-11!GO:0050657;nucleic acid transport;3.1063727430794e-11!GO:0051236;establishment of RNA localization;3.1063727430794e-11!GO:0050658;RNA transport;3.1063727430794e-11!GO:0044432;endoplasmic reticulum part;3.84235013347534e-11!GO:0003712;transcription cofactor activity;4.46234333620997e-11!GO:0043038;amino acid activation;4.82391467709598e-11!GO:0006418;tRNA aminoacylation for protein translation;4.82391467709598e-11!GO:0043039;tRNA aminoacylation;4.82391467709598e-11!GO:0006915;apoptosis;5.04786230254749e-11!GO:0046930;pore complex;5.98095377778139e-11!GO:0007005;mitochondrion organization and biogenesis;6.56636914284982e-11!GO:0045333;cellular respiration;7.95721612080224e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.08721083016693e-10!GO:0006446;regulation of translational initiation;1.11581567802667e-10!GO:0008026;ATP-dependent helicase activity;1.12534233982154e-10!GO:0015630;microtubule cytoskeleton;1.17230433263407e-10!GO:0006913;nucleocytoplasmic transport;1.19222305154036e-10!GO:0006364;rRNA processing;1.50258245116844e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.57222313850439e-10!GO:0000074;regulation of progression through cell cycle;1.7162596568268e-10!GO:0009060;aerobic respiration;1.73145038186667e-10!GO:0051188;cofactor biosynthetic process;1.83625623175517e-10!GO:0051726;regulation of cell cycle;2.15455124917299e-10!GO:0009056;catabolic process;2.35964534585345e-10!GO:0016072;rRNA metabolic process;2.49457211693371e-10!GO:0009259;ribonucleotide metabolic process;2.90704767148436e-10!GO:0051169;nuclear transport;3.1503375839104e-10!GO:0006323;DNA packaging;4.53542394663568e-10!GO:0006163;purine nucleotide metabolic process;5.76112584384064e-10!GO:0008219;cell death;6.22022502489347e-10!GO:0016265;death;6.22022502489347e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.67953550312609e-10!GO:0016607;nuclear speck;7.40425467221233e-10!GO:0006164;purine nucleotide biosynthetic process;7.75252897654352e-10!GO:0009260;ribonucleotide biosynthetic process;9.99081559651793e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.30737370840587e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.32148420924729e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.32148420924729e-09!GO:0051028;mRNA transport;1.59684756697211e-09!GO:0009150;purine ribonucleotide metabolic process;2.06795361881438e-09!GO:0008639;small protein conjugating enzyme activity;2.5009100919692e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.73974344893148e-09!GO:0006366;transcription from RNA polymerase II promoter;3.43713310745295e-09!GO:0008565;protein transporter activity;3.61179164160751e-09!GO:0016568;chromatin modification;4.24100670994034e-09!GO:0006099;tricarboxylic acid cycle;4.84871783598102e-09!GO:0046356;acetyl-CoA catabolic process;4.84871783598102e-09!GO:0004842;ubiquitin-protein ligase activity;5.90379530667846e-09!GO:0016740;transferase activity;6.25876741261563e-09!GO:0003697;single-stranded DNA binding;7.13419113994583e-09!GO:0043566;structure-specific DNA binding;8.0178875629832e-09!GO:0019787;small conjugating protein ligase activity;8.32238227697421e-09!GO:0006084;acetyl-CoA metabolic process;8.34489239001748e-09!GO:0051187;cofactor catabolic process;8.7178620272068e-09!GO:0015986;ATP synthesis coupled proton transport;8.93174148640628e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.93174148640628e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.50641237382896e-09!GO:0009108;coenzyme biosynthetic process;1.00523399353255e-08!GO:0006261;DNA-dependent DNA replication;1.62333193014492e-08!GO:0005789;endoplasmic reticulum membrane;1.82981964996866e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.82981964996866e-08!GO:0017038;protein import;2.03663117006737e-08!GO:0009141;nucleoside triphosphate metabolic process;2.2649085489544e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.42557402436449e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.42557402436449e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.24170329392715e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.24170329392715e-08!GO:0050794;regulation of cellular process;3.94721527558293e-08!GO:0005793;ER-Golgi intermediate compartment;3.94721527558293e-08!GO:0019829;cation-transporting ATPase activity;4.04058298831433e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.11957421455527e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.37001038398712e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.37001038398712e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.65786573627731e-08!GO:0000775;chromosome, pericentric region;5.68164603041098e-08!GO:0016881;acid-amino acid ligase activity;6.86610074493786e-08!GO:0005819;spindle;7.11013539274959e-08!GO:0006754;ATP biosynthetic process;9.88704817258268e-08!GO:0006753;nucleoside phosphate metabolic process;9.88704817258268e-08!GO:0046034;ATP metabolic process;1.02784171816373e-07!GO:0009109;coenzyme catabolic process;1.22061850525901e-07!GO:0006793;phosphorus metabolic process;1.25301581424654e-07!GO:0006796;phosphate metabolic process;1.25301581424654e-07!GO:0032446;protein modification by small protein conjugation;1.26232187881994e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.31995207445657e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.44930582933601e-07!GO:0000245;spliceosome assembly;1.47936396431495e-07!GO:0043067;regulation of programmed cell death;1.66987019548163e-07!GO:0042981;regulation of apoptosis;2.22861832421556e-07!GO:0005768;endosome;2.56039656537719e-07!GO:0016567;protein ubiquitination;2.67596772995788e-07!GO:0000785;chromatin;3.5040085710396e-07!GO:0045259;proton-transporting ATP synthase complex;3.64991118612841e-07!GO:0005667;transcription factor complex;4.61278877520153e-07!GO:0016491;oxidoreductase activity;4.855700430948e-07!GO:0005815;microtubule organizing center;6.05386228681285e-07!GO:0016787;hydrolase activity;6.43755919686964e-07!GO:0005813;centrosome;6.43755919686964e-07!GO:0043623;cellular protein complex assembly;6.86917294779683e-07!GO:0016310;phosphorylation;8.71136827663031e-07!GO:0044431;Golgi apparatus part;9.16098055265191e-07!GO:0006752;group transfer coenzyme metabolic process;1.12153096467896e-06!GO:0008094;DNA-dependent ATPase activity;1.1680608340179e-06!GO:0009117;nucleotide metabolic process;1.341257217422e-06!GO:0051427;hormone receptor binding;1.67966115667338e-06!GO:0007051;spindle organization and biogenesis;1.85481160753701e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.91050152278472e-06!GO:0005762;mitochondrial large ribosomal subunit;1.95023910593525e-06!GO:0000315;organellar large ribosomal subunit;1.95023910593525e-06!GO:0065004;protein-DNA complex assembly;1.95315617225141e-06!GO:0000151;ubiquitin ligase complex;1.95315617225141e-06!GO:0043069;negative regulation of programmed cell death;2.42429496664416e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.44686664006295e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.61142317754993e-06!GO:0015980;energy derivation by oxidation of organic compounds;2.68045059551371e-06!GO:0051329;interphase of mitotic cell cycle;2.84584379527799e-06!GO:0048475;coated membrane;2.88366291951765e-06!GO:0030117;membrane coat;2.88366291951765e-06!GO:0003714;transcription corepressor activity;3.06412769512965e-06!GO:0016779;nucleotidyltransferase activity;3.24501661956204e-06!GO:0035257;nuclear hormone receptor binding;4.06517179519215e-06!GO:0030120;vesicle coat;4.35878721707724e-06!GO:0030662;coated vesicle membrane;4.35878721707724e-06!GO:0006091;generation of precursor metabolites and energy;5.77358950349918e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.00596599224825e-06!GO:0043066;negative regulation of apoptosis;6.18328182851801e-06!GO:0008654;phospholipid biosynthetic process;6.64461001928408e-06!GO:0005657;replication fork;7.42816895323034e-06!GO:0048523;negative regulation of cellular process;8.4223559222079e-06!GO:0006839;mitochondrial transport;9.55185046275551e-06!GO:0005839;proteasome core complex (sensu Eukaryota);9.6098602968666e-06!GO:0006302;double-strand break repair;9.76534213992239e-06!GO:0042802;identical protein binding;9.84488328786484e-06!GO:0051325;interphase;1.03840378694857e-05!GO:0003690;double-stranded DNA binding;1.08274264795283e-05!GO:0006333;chromatin assembly or disassembly;1.09820432710866e-05!GO:0016563;transcription activator activity;1.20852758072011e-05!GO:0006613;cotranslational protein targeting to membrane;1.68039587801252e-05!GO:0000314;organellar small ribosomal subunit;1.89518910434543e-05!GO:0005763;mitochondrial small ribosomal subunit;1.89518910434543e-05!GO:0016564;transcription repressor activity;1.98272329771592e-05!GO:0019222;regulation of metabolic process;1.99220622191846e-05!GO:0003924;GTPase activity;2.12309899480024e-05!GO:0003724;RNA helicase activity;2.23576326632459e-05!GO:0043021;ribonucleoprotein binding;2.23576326632459e-05!GO:0044440;endosomal part;2.37960270006024e-05!GO:0010008;endosome membrane;2.37960270006024e-05!GO:0006606;protein import into nucleus;2.51092912781609e-05!GO:0000075;cell cycle checkpoint;2.82915491519219e-05!GO:0051170;nuclear import;2.82930352735845e-05!GO:0005770;late endosome;2.82930352735845e-05!GO:0003713;transcription coactivator activity;2.9538447529331e-05!GO:0051246;regulation of protein metabolic process;2.99962155740436e-05!GO:0019899;enzyme binding;3.28787070121176e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.28787070121176e-05!GO:0015399;primary active transmembrane transporter activity;3.28787070121176e-05!GO:0045454;cell redox homeostasis;3.45809457222175e-05!GO:0004298;threonine endopeptidase activity;3.50458919467402e-05!GO:0000139;Golgi membrane;3.57132105754305e-05!GO:0051052;regulation of DNA metabolic process;4.40890814413264e-05!GO:0005525;GTP binding;4.52911405548831e-05!GO:0051168;nuclear export;4.55488761471922e-05!GO:0007006;mitochondrial membrane organization and biogenesis;4.90126302098251e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.00864059764517e-05!GO:0003899;DNA-directed RNA polymerase activity;5.03535774652946e-05!GO:0045786;negative regulation of progression through cell cycle;5.08060474857017e-05!GO:0006916;anti-apoptosis;5.09730901430043e-05!GO:0008033;tRNA processing;5.13258087440382e-05!GO:0031324;negative regulation of cellular metabolic process;5.24147675165794e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.71762804915897e-05!GO:0007017;microtubule-based process;6.39820193465009e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.68785843138529e-05!GO:0007010;cytoskeleton organization and biogenesis;7.35217431291406e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;7.62977399039623e-05!GO:0008022;protein C-terminus binding;8.03062543499489e-05!GO:0016853;isomerase activity;8.43817076742641e-05!GO:0046467;membrane lipid biosynthetic process;9.25766891278201e-05!GO:0000776;kinetochore;9.45617942914615e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000102796135117506!GO:0003684;damaged DNA binding;0.000107183962501254!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000109761977721526!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000125249816133618!GO:0006626;protein targeting to mitochondrion;0.000131537209511182!GO:0048471;perinuclear region of cytoplasm;0.000138700163514754!GO:0048519;negative regulation of biological process;0.000139393454781231!GO:0005769;early endosome;0.000148053828223991!GO:0003682;chromatin binding;0.000153972724763362!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000153972724763362!GO:0005874;microtubule;0.000162553632091832!GO:0019843;rRNA binding;0.000173552243044918!GO:0003729;mRNA binding;0.000173552243044918!GO:0050789;regulation of biological process;0.000176559603832462!GO:0009892;negative regulation of metabolic process;0.000178862897249048!GO:0009165;nucleotide biosynthetic process;0.000183857433954642!GO:0044452;nucleolar part;0.000195215798694942!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000198302802956871!GO:0019752;carboxylic acid metabolic process;0.000199559018482321!GO:0043681;protein import into mitochondrion;0.000204311083861987!GO:0006082;organic acid metabolic process;0.000241294453041546!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000259075572457634!GO:0006414;translational elongation;0.000270338668998838!GO:0007088;regulation of mitosis;0.000270338668998838!GO:0006401;RNA catabolic process;0.000272214551496244!GO:0006352;transcription initiation;0.000284313306935883!GO:0006402;mRNA catabolic process;0.000284401558326182!GO:0016363;nuclear matrix;0.000286877209535601!GO:0008186;RNA-dependent ATPase activity;0.000302881225040687!GO:0046474;glycerophospholipid biosynthetic process;0.000311602689645788!GO:0005905;coated pit;0.000312717509909538!GO:0030867;rough endoplasmic reticulum membrane;0.00032446446291502!GO:0043492;ATPase activity, coupled to movement of substances;0.000326553370199665!GO:0031988;membrane-bound vesicle;0.000340253866575857!GO:0031252;leading edge;0.000381691324803799!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000388607107337187!GO:0005885;Arp2/3 protein complex;0.000393462765238151!GO:0065009;regulation of a molecular function;0.000411852345062533!GO:0035258;steroid hormone receptor binding;0.000433741195069861!GO:0005798;Golgi-associated vesicle;0.00044074323998052!GO:0030880;RNA polymerase complex;0.000457066668647409!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000457893604385604!GO:0006383;transcription from RNA polymerase III promoter;0.000460982831707726!GO:0032561;guanyl ribonucleotide binding;0.000466660419472237!GO:0019001;guanyl nucleotide binding;0.000466660419472237!GO:0033116;ER-Golgi intermediate compartment membrane;0.000479115603729577!GO:0003678;DNA helicase activity;0.000479664802293196!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000492762162061757!GO:0016023;cytoplasmic membrane-bound vesicle;0.000492762162061757!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000531583231586134!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000531583231586134!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000531583231586134!GO:0006310;DNA recombination;0.00054084191171107!GO:0000059;protein import into nucleus, docking;0.000548704393349557!GO:0031323;regulation of cellular metabolic process;0.000578516449879595!GO:0006612;protein targeting to membrane;0.00057874566119095!GO:0005741;mitochondrial outer membrane;0.00061305344051036!GO:0044262;cellular carbohydrate metabolic process;0.000626163646434206!GO:0031968;organelle outer membrane;0.000626163646434206!GO:0008629;induction of apoptosis by intracellular signals;0.000663682928596317!GO:0007059;chromosome segregation;0.000663932642468263!GO:0004576;oligosaccharyl transferase activity;0.000723412639577795!GO:0046489;phosphoinositide biosynthetic process;0.000725608820587298!GO:0019867;outer membrane;0.000749406625316475!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000755047750352093!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000757002552258582!GO:0006007;glucose catabolic process;0.000771808368228269!GO:0051252;regulation of RNA metabolic process;0.000777377344500165!GO:0006350;transcription;0.000855727660945757!GO:0005684;U2-dependent spliceosome;0.000883456579264523!GO:0004004;ATP-dependent RNA helicase activity;0.000883456579264523!GO:0016251;general RNA polymerase II transcription factor activity;0.000895025249871369!GO:0007052;mitotic spindle organization and biogenesis;0.000895025249871369!GO:0016741;transferase activity, transferring one-carbon groups;0.000907354768379593!GO:0008250;oligosaccharyl transferase complex;0.000916199128062639!GO:0007093;mitotic cell cycle checkpoint;0.000933158026767391!GO:0008168;methyltransferase activity;0.000939344353639343!GO:0016859;cis-trans isomerase activity;0.00094354967554693!GO:0005637;nuclear inner membrane;0.000977577037632312!GO:0015992;proton transport;0.000983984177969539!GO:0005788;endoplasmic reticulum lumen;0.00100878339655176!GO:0006749;glutathione metabolic process;0.00101682243712529!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00103679651885537!GO:0000428;DNA-directed RNA polymerase complex;0.00103679651885537!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00103679651885537!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00103679651885537!GO:0006520;amino acid metabolic process;0.00105324132779764!GO:0015631;tubulin binding;0.00111502932900018!GO:0006650;glycerophospholipid metabolic process;0.00111502932900018!GO:0007264;small GTPase mediated signal transduction;0.00112674447497032!GO:0006818;hydrogen transport;0.00114009910475986!GO:0031982;vesicle;0.00116598555227697!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00117793051155196!GO:0004527;exonuclease activity;0.00132745916707514!GO:0050662;coenzyme binding;0.00134444068066026!GO:0016481;negative regulation of transcription;0.00160116032434488!GO:0030521;androgen receptor signaling pathway;0.00166757697712455!GO:0032508;DNA duplex unwinding;0.00170996944749954!GO:0032392;DNA geometric change;0.00170996944749954!GO:0004674;protein serine/threonine kinase activity;0.00171287045484675!GO:0031410;cytoplasmic vesicle;0.00176160889377721!GO:0051087;chaperone binding;0.00188109137230028!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00190338957730077!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00208975523118078!GO:0015002;heme-copper terminal oxidase activity;0.00208975523118078!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00208975523118078!GO:0004129;cytochrome-c oxidase activity;0.00208975523118078!GO:0048487;beta-tubulin binding;0.00210047742886429!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00215751088240977!GO:0005048;signal sequence binding;0.00220111086987439!GO:0006891;intra-Golgi vesicle-mediated transport;0.00237224178220519!GO:0016044;membrane organization and biogenesis;0.00237224178220519!GO:0016272;prefoldin complex;0.00237776213292964!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00254456265183771!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0025633955853012!GO:0046483;heterocycle metabolic process;0.00265016067645352!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00267558309581594!GO:0048500;signal recognition particle;0.00285671848918336!GO:0006275;regulation of DNA replication;0.00309728257885641!GO:0030118;clathrin coat;0.00309728257885641!GO:0006268;DNA unwinding during replication;0.00312172201267322!GO:0006611;protein export from nucleus;0.00314479486330347!GO:0046365;monosaccharide catabolic process;0.00315046120485255!GO:0003746;translation elongation factor activity;0.0031857994137621!GO:0045893;positive regulation of transcription, DNA-dependent;0.00340828666523421!GO:0006338;chromatin remodeling;0.00340828666523421!GO:0016197;endosome transport;0.00349854436836972!GO:0000049;tRNA binding;0.00364932172380478!GO:0051287;NAD binding;0.00364932172380478!GO:0042770;DNA damage response, signal transduction;0.0036566102336304!GO:0006778;porphyrin metabolic process;0.0036566102336304!GO:0033013;tetrapyrrole metabolic process;0.0036566102336304!GO:0006672;ceramide metabolic process;0.00368959744109846!GO:0008632;apoptotic program;0.00370338372783582!GO:0046983;protein dimerization activity;0.00382017390467047!GO:0006289;nucleotide-excision repair;0.00395326748417261!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00416760131155522!GO:0005996;monosaccharide metabolic process;0.00416760131155522!GO:0048468;cell development;0.00424685030183649!GO:0000287;magnesium ion binding;0.00426791029899426!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00455105125791143!GO:0000922;spindle pole;0.00464677055351754!GO:0046519;sphingoid metabolic process;0.00477907573906114!GO:0006096;glycolysis;0.00478849794605626!GO:0006334;nucleosome assembly;0.00481987817904906!GO:0007243;protein kinase cascade;0.0048472300840662!GO:0019318;hexose metabolic process;0.00489995658875122!GO:0008312;7S RNA binding;0.00489995658875122!GO:0048522;positive regulation of cellular process;0.00489995658875122!GO:0043488;regulation of mRNA stability;0.00499976171213621!GO:0043487;regulation of RNA stability;0.00499976171213621!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00517093365144533!GO:0019320;hexose catabolic process;0.00554035824904475!GO:0050681;androgen receptor binding;0.00561897805496284!GO:0045045;secretory pathway;0.00566340034617019!GO:0046164;alcohol catabolic process;0.00568995015718362!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00569193439702834!GO:0031497;chromatin assembly;0.00581753450891199!GO:0000792;heterochromatin;0.00591885045189175!GO:0051789;response to protein stimulus;0.00599711574139489!GO:0006986;response to unfolded protein;0.00599711574139489!GO:0000086;G2/M transition of mitotic cell cycle;0.00600840647091435!GO:0030384;phosphoinositide metabolic process;0.00608927147815442!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00621706842044189!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00635495891169327!GO:0006405;RNA export from nucleus;0.00655778334367869!GO:0018196;peptidyl-asparagine modification;0.0066367319190004!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0066367319190004!GO:0030132;clathrin coat of coated pit;0.00671663895109329!GO:0006497;protein amino acid lipidation;0.00673829433147881!GO:0043022;ribosome binding;0.00686434952363995!GO:0030176;integral to endoplasmic reticulum membrane;0.00695694683898254!GO:0043624;cellular protein complex disassembly;0.006964525947452!GO:0008139;nuclear localization sequence binding;0.00706510114880771!GO:0042168;heme metabolic process;0.00712322330903586!GO:0000339;RNA cap binding;0.00714100925538489!GO:0010468;regulation of gene expression;0.00720713780949454!GO:0006284;base-excision repair;0.00720713780949454!GO:0030119;AP-type membrane coat adaptor complex;0.00721364264298124!GO:0030036;actin cytoskeleton organization and biogenesis;0.00752622415705836!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00753270569006234!GO:0045047;protein targeting to ER;0.00753270569006234!GO:0005758;mitochondrial intermembrane space;0.00760387688201925!GO:0008234;cysteine-type peptidase activity;0.00764505765554409!GO:0000152;nuclear ubiquitin ligase complex;0.0077149708481668!GO:0022890;inorganic cation transmembrane transporter activity;0.00778521050844159!GO:0006144;purine base metabolic process;0.00819056546488954!GO:0005876;spindle microtubule;0.00841129448435625!GO:0006376;mRNA splice site selection;0.00847538587956352!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00847538587956352!GO:0031625;ubiquitin protein ligase binding;0.00853025313716192!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00875348327886474!GO:0030663;COPI coated vesicle membrane;0.00877393236313119!GO:0030126;COPI vesicle coat;0.00877393236313119!GO:0003711;transcription elongation regulator activity;0.00897451142839913!GO:0043284;biopolymer biosynthetic process;0.00899589017521982!GO:0001726;ruffle;0.00927726198879938!GO:0006595;polyamine metabolic process;0.00937905751010228!GO:0031902;late endosome membrane;0.00948640937166565!GO:0005832;chaperonin-containing T-complex;0.00991131379226244!GO:0030131;clathrin adaptor complex;0.00992874388532278!GO:0031124;mRNA 3'-end processing;0.0102263358340825!GO:0032984;macromolecular complex disassembly;0.0104639382086739!GO:0050178;phenylpyruvate tautomerase activity;0.0104694161081213!GO:0031072;heat shock protein binding;0.0104719779220817!GO:0005773;vacuole;0.0105360667844738!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0106687518004889!GO:0000725;recombinational repair;0.0107003744142952!GO:0000724;double-strand break repair via homologous recombination;0.0107003744142952!GO:0030658;transport vesicle membrane;0.0109527458788612!GO:0031570;DNA integrity checkpoint;0.0110889863115469!GO:0006740;NADPH regeneration;0.0110889863115469!GO:0006098;pentose-phosphate shunt;0.0110889863115469!GO:0030659;cytoplasmic vesicle membrane;0.0110889863115469!GO:0051539;4 iron, 4 sulfur cluster binding;0.0111335828135032!GO:0004003;ATP-dependent DNA helicase activity;0.0114419670548073!GO:0008610;lipid biosynthetic process;0.0114419670548073!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0115723901813357!GO:0004518;nuclease activity;0.0115723901813357!GO:0004448;isocitrate dehydrogenase activity;0.0118158136802147!GO:0042393;histone binding;0.0122121642180096!GO:0043065;positive regulation of apoptosis;0.0124319863492066!GO:0006506;GPI anchor biosynthetic process;0.0124760386311037!GO:0031901;early endosome membrane;0.0124943350668456!GO:0004177;aminopeptidase activity;0.0126686277687433!GO:0030503;regulation of cell redox homeostasis;0.0128693388591136!GO:0051101;regulation of DNA binding;0.0130770339816221!GO:0045941;positive regulation of transcription;0.0132338871197466!GO:0005791;rough endoplasmic reticulum;0.0133004180296985!GO:0051920;peroxiredoxin activity;0.0134312219541675!GO:0048037;cofactor binding;0.0139445442252568!GO:0031970;organelle envelope lumen;0.0139445442252568!GO:0051098;regulation of binding;0.0140481845863053!GO:0009303;rRNA transcription;0.0140732798305185!GO:0000096;sulfur amino acid metabolic process;0.0141442861127668!GO:0006643;membrane lipid metabolic process;0.0155060398972087!GO:0043068;positive regulation of programmed cell death;0.0156096595878738!GO:0006270;DNA replication initiation;0.016189591124206!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0163504308604387!GO:0046966;thyroid hormone receptor binding;0.0166991899943464!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0166991899943464!GO:0004192;cathepsin D activity;0.0169455569022754!GO:0009116;nucleoside metabolic process;0.0172704837386426!GO:0044433;cytoplasmic vesicle part;0.0173620133628277!GO:0000209;protein polyubiquitination;0.0173757425237846!GO:0017166;vinculin binding;0.017544544815334!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0176893619281872!GO:0008180;signalosome;0.0176893619281872!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0178809816144797!GO:0006505;GPI anchor metabolic process;0.0178821045634204!GO:0042158;lipoprotein biosynthetic process;0.0180231965202578!GO:0009451;RNA modification;0.0184075960763917!GO:0008601;protein phosphatase type 2A regulator activity;0.0184770682081002!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0184814891487215!GO:0043189;H4/H2A histone acetyltransferase complex;0.0185853213270148!GO:0051540;metal cluster binding;0.0187047414641115!GO:0051536;iron-sulfur cluster binding;0.0187047414641115!GO:0043241;protein complex disassembly;0.0188826689812616!GO:0030125;clathrin vesicle coat;0.0190363280094973!GO:0030665;clathrin coated vesicle membrane;0.0190363280094973!GO:0012506;vesicle membrane;0.0190363280094973!GO:0004532;exoribonuclease activity;0.0191017874257892!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0191017874257892!GO:0016407;acetyltransferase activity;0.01937650270912!GO:0006118;electron transport;0.0194821840578431!GO:0009112;nucleobase metabolic process;0.0194988513636666!GO:0016408;C-acyltransferase activity;0.0194988513636666!GO:0008092;cytoskeletal protein binding;0.0195024176938194!GO:0000178;exosome (RNase complex);0.0196560118943479!GO:0030660;Golgi-associated vesicle membrane;0.0199447783238096!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0199447783238096!GO:0016301;kinase activity;0.0199447783238096!GO:0043596;nuclear replication fork;0.0200629348963173!GO:0030518;steroid hormone receptor signaling pathway;0.0201596463130187!GO:0051128;regulation of cellular component organization and biogenesis;0.0201596463130187!GO:0008017;microtubule binding;0.0203825218767438!GO:0004680;casein kinase activity;0.0204734102892873!GO:0005663;DNA replication factor C complex;0.0205869190697511!GO:0045920;negative regulation of exocytosis;0.0205869190697511!GO:0043301;negative regulation of leukocyte degranulation;0.0205869190697511!GO:0043305;negative regulation of mast cell degranulation;0.0205869190697511!GO:0043130;ubiquitin binding;0.0206375158945414!GO:0032182;small conjugating protein binding;0.0206375158945414!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0209505169716611!GO:0047485;protein N-terminus binding;0.0209875744378494!GO:0008408;3'-5' exonuclease activity;0.0210918080890154!GO:0030137;COPI-coated vesicle;0.0210918080890154!GO:0035267;NuA4 histone acetyltransferase complex;0.0214288869421332!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0214875632577127!GO:0006509;membrane protein ectodomain proteolysis;0.0215484109295244!GO:0033619;membrane protein proteolysis;0.0215484109295244!GO:0050790;regulation of catalytic activity;0.0218182653522454!GO:0032774;RNA biosynthetic process;0.0221980163350483!GO:0031123;RNA 3'-end processing;0.0225050686932908!GO:0022415;viral reproductive process;0.0225497422879129!GO:0032200;telomere organization and biogenesis;0.0226998577914109!GO:0000723;telomere maintenance;0.0226998577914109!GO:0006730;one-carbon compound metabolic process;0.0227077225894276!GO:0051053;negative regulation of DNA metabolic process;0.0229866684063511!GO:0022411;cellular component disassembly;0.0229866684063511!GO:0005875;microtubule associated complex;0.0234354809948247!GO:0003725;double-stranded RNA binding;0.0234354809948247!GO:0030134;ER to Golgi transport vesicle;0.0241114824634916!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0243323199410477!GO:0006351;transcription, DNA-dependent;0.0249255114837368!GO:0000123;histone acetyltransferase complex;0.0257055100075573!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0260543257234379!GO:0010257;NADH dehydrogenase complex assembly;0.0260543257234379!GO:0033108;mitochondrial respiratory chain complex assembly;0.0260543257234379!GO:0008637;apoptotic mitochondrial changes;0.026169560844015!GO:0000819;sister chromatid segregation;0.0264778669206175!GO:0005869;dynactin complex;0.0268324305245233!GO:0006979;response to oxidative stress;0.0269496348971799!GO:0006695;cholesterol biosynthetic process;0.0270904332826868!GO:0006006;glucose metabolic process;0.027843447994625!GO:0006220;pyrimidine nucleotide metabolic process;0.028472211697703!GO:0006519;amino acid and derivative metabolic process;0.0291941168323147!GO:0000077;DNA damage checkpoint;0.0292454395961307!GO:0007021;tubulin folding;0.0297562151912066!GO:0000070;mitotic sister chromatid segregation;0.0298103347377648!GO:0030508;thiol-disulfide exchange intermediate activity;0.0302002185718649!GO:0043433;negative regulation of transcription factor activity;0.0308971745410964!GO:0046822;regulation of nucleocytoplasmic transport;0.0309346347705673!GO:0004347;glucose-6-phosphate isomerase activity;0.0309431436017906!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0316530183594604!GO:0000323;lytic vacuole;0.0316530183594604!GO:0005764;lysosome;0.0316530183594604!GO:0051348;negative regulation of transferase activity;0.0322535799217145!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0323107289690767!GO:0000726;non-recombinational repair;0.0323772735018785!GO:0000082;G1/S transition of mitotic cell cycle;0.0324312718313468!GO:0006779;porphyrin biosynthetic process;0.0326750671411813!GO:0033014;tetrapyrrole biosynthetic process;0.0326750671411813!GO:0005669;transcription factor TFIID complex;0.0327893567004852!GO:0015036;disulfide oxidoreductase activity;0.0328674794927312!GO:0032259;methylation;0.0329657119316769!GO:0044275;cellular carbohydrate catabolic process;0.0334504886400568!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0336422434467251!GO:0051881;regulation of mitochondrial membrane potential;0.0336422434467251!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0337259383621315!GO:0045039;protein import into mitochondrial inner membrane;0.0337259383621315!GO:0006739;NADP metabolic process;0.0340567768541124!GO:0033673;negative regulation of kinase activity;0.0341104266716831!GO:0006469;negative regulation of protein kinase activity;0.0341104266716831!GO:0019206;nucleoside kinase activity;0.03421460831036!GO:0005784;translocon complex;0.0342532649452613!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0344298611076343!GO:0030029;actin filament-based process;0.0344298611076343!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0348805169833388!GO:0006733;oxidoreduction coenzyme metabolic process;0.0355244200873552!GO:0050811;GABA receptor binding;0.0355244200873552!GO:0006378;mRNA polyadenylation;0.0356611261414769!GO:0006516;glycoprotein catabolic process;0.0359356189022218!GO:0043414;biopolymer methylation;0.0362714487198177!GO:0000781;chromosome, telomeric region;0.0370011245111802!GO:0006301;postreplication repair;0.037334099523982!GO:0000159;protein phosphatase type 2A complex;0.0377285263512365!GO:0000228;nuclear chromosome;0.0379448497226343!GO:0016018;cyclosporin A binding;0.0384714789867891!GO:0007050;cell cycle arrest;0.0387124436604531!GO:0019783;small conjugating protein-specific protease activity;0.0390501072348123!GO:0006266;DNA ligation;0.0391216301124679!GO:0006892;post-Golgi vesicle-mediated transport;0.0400193061640567!GO:0006400;tRNA modification;0.0408433774983613!GO:0008097;5S rRNA binding;0.0409682245485777!GO:0006950;response to stress;0.0409682245485777!GO:0030496;midbody;0.0410615836816557!GO:0005680;anaphase-promoting complex;0.0410615836816557!GO:0007030;Golgi organization and biogenesis;0.0417225706710433!GO:0006081;aldehyde metabolic process;0.0417488645624983!GO:0000118;histone deacetylase complex;0.0417488645624983!GO:0004843;ubiquitin-specific protease activity;0.0421473810027767!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0424308259646508!GO:0051338;regulation of transferase activity;0.0437837095407168!GO:0005652;nuclear lamina;0.0437935948648696!GO:0006767;water-soluble vitamin metabolic process;0.0439483005554054!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0439483005554054!GO:0031056;regulation of histone modification;0.0454840468383734!GO:0008276;protein methyltransferase activity;0.0455028053616714!GO:0042791;5S class rRNA transcription;0.0455028053616714!GO:0000127;transcription factor TFIIIC complex;0.0455028053616714!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.0455028053616714!GO:0048144;fibroblast proliferation;0.0455545598106052!GO:0048145;regulation of fibroblast proliferation;0.0455545598106052!GO:0008287;protein serine/threonine phosphatase complex;0.0455582600777287!GO:0005521;lamin binding;0.0461297421023912!GO:0046982;protein heterodimerization activity;0.047160846849294!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0474214322285734!GO:0000303;response to superoxide;0.0476686385236097!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0478232471599998!GO:0048146;positive regulation of fibroblast proliferation;0.0482072342401775!GO:0004197;cysteine-type endopeptidase activity;0.0482072342401775!GO:0030133;transport vesicle;0.0482072342401775!GO:0016126;sterol biosynthetic process;0.0484140800318287!GO:0030911;TPR domain binding;0.0493685829955443!GO:0031371;ubiquitin conjugating enzyme complex;0.0493685829955443!GO:0045449;regulation of transcription;0.0494779051589763
|sample_id=10845
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=mesothelium
|top_motifs=ALX1:2.5683885444;HNF1A:2.32232672315;ESRRA:1.68006445815;ONECUT1,2:1.66037127975;ELK1,4_GABP{A,B1}:1.57537485811;FOXQ1:1.47497941771;ZBTB16:1.38749254881;MYOD1:1.30528672375;RXRA_VDR{dimer}:1.26001703362;LHX3,4:1.25394598609;NKX6-1,2:1.22903264296;EVI1:1.1536838603;E2F1..5:1.13038684942;NR5A1,2:0.998439836535;NFE2L2:0.997287364723;NR6A1:0.958202794661;PITX1..3:0.945248168651;NKX2-1,4:0.906368232562;ADNP_IRX_SIX_ZHX:0.889826320321;NRF1:0.841333363694;PAX5:0.833725077318;CDX1,2,4:0.792704480747;MYB:0.78389355272;STAT5{A,B}:0.743023170298;ZNF143:0.729688748219;AIRE:0.718268148745;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.680921453714;NKX3-2:0.662277848875;HIF1A:0.657305486486;HNF4A_NR2F1,2:0.653807125228;RORA:0.648883261733;HOX{A6,A7,B6,B7}:0.620804718261;RXR{A,B,G}:0.578666104479;NFE2:0.55718000215;ALX4:0.542684789083;bHLH_family:0.537180906704;SOX2:0.532553184865;NFY{A,B,C}:0.517597637979;UFEwm:0.488791153508;HAND1,2:0.465614526739;PBX1:0.420330773784;YY1:0.397603892098;TEF:0.382617305454;DBP:0.354128618236;TBX4,5:0.335970208093;PAX4:0.329131712244;XCPE1{core}:0.324521864361;LEF1_TCF7_TCF7L1,2:0.287595042011;ARID5B:0.262116498941;SNAI1..3:0.250892070302;IKZF2:0.243800866926;TOPORS:0.238387281669;NANOG:0.233817973471;NR1H4:0.231111734551;FOXP3:0.219727678856;NFE2L1:0.209168303784;NKX3-1:0.208375144107;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.203955679362;POU1F1:0.182366624451;CUX2:0.178421822756;ZFP161:0.166523156643;ZEB1:0.165455619665;EN1,2:0.153660368402;GFI1:0.144836810935;NKX2-2,8:0.144345524748;IKZF1:0.130485232729;TEAD1:0.112593268814;TP53:0.100593819031;HOXA9_MEIS1:0.0880034285576;BREu{core}:0.0846039801342;NFIX:0.0802029434746;FOXM1:0.0735333360002;HOX{A4,D4}:0.071470533572;OCT4_SOX2{dimer}:0.0662170379136;FOSL2:0.0585591785826;FOX{F1,F2,J1}:0.0580817267211;ZIC1..3:0.0512844937144;FOXP1:0.0400905403546;SOX17:0.033725375485;PDX1:0.031184211012;ELF1,2,4:0.0279869389276;HOX{A5,B5}:0.0180099466879;FOXN1:-0.0191131359374;LMO2:-0.0290831904315;POU6F1:-0.0387724902963;XBP1:-0.0417612024862;FOXD3:-0.0453675765518;PRRX1,2:-0.0481560318471;RFX1:-0.0996104464747;RBPJ:-0.109619076108;TFDP1:-0.110530364515;MTE{core}:-0.132515407661;CDC5L:-0.133990939783;NFKB1_REL_RELA:-0.151308586552;STAT1,3:-0.157552251594;EP300:-0.160121642593;FOXA2:-0.162415113723;PAX8:-0.173302372507;CREB1:-0.176388950045;POU5F1:-0.176666785583;TFAP2{A,C}:-0.178929067918;MZF1:-0.184612796857;AHR_ARNT_ARNT2:-0.186154860561;POU3F1..4:-0.186341153475;BACH2:-0.189121224545;GFI1B:-0.209431615665;KLF4:-0.209843533857;ATF2:-0.210001156014;PAX6:-0.242403637323;ZNF423:-0.242995591352;TFCP2:-0.250264049736;AR:-0.250369368386;PAX1,9:-0.253526587362;RFX2..5_RFXANK_RFXAP:-0.258195984953;EGR1..3:-0.278496993077;ESR1:-0.287041883498;FOS_FOS{B,L1}_JUN{B,D}:-0.297145815591;RREB1:-0.300807844968;PPARG:-0.316628913627;ZNF384:-0.323976834025;MAZ:-0.324610920471;GTF2I:-0.337381524797;PAX2:-0.363843682727;CEBPA,B_DDIT3:-0.366156554932;PATZ1:-0.375082746188;TLX1..3_NFIC{dimer}:-0.380059822661;CRX:-0.385478289142;BPTF:-0.410963046112;TFAP2B:-0.462118306514;NKX2-3_NKX2-5:-0.469221617788;MEF2{A,B,C,D}:-0.479056857648;T:-0.481303139004;SP1:-0.482929027078;GATA6:-0.485752655727;FOXL1:-0.487589478325;STAT2,4,6:-0.495311940592;GATA4:-0.516749221637;SPIB:-0.526815480325;HIC1:-0.532891409877;SPI1:-0.549529169515;IRF7:-0.554088150455;SOX{8,9,10}:-0.561408002798;ATF5_CREB3:-0.593693916809;POU2F1..3:-0.602270436108;RUNX1..3:-0.604256382225;EBF1:-0.606263600848;ZNF148:-0.620349118584;MYBL2:-0.621511895029;NR3C1:-0.621965283856;ATF4:-0.641479145316;PRDM1:-0.663116262787;TAL1_TCF{3,4,12}:-0.665633921555;FOX{I1,J2}:-0.698444727833;SPZ1:-0.702447421241;HLF:-0.716678255445;DMAP1_NCOR{1,2}_SMARC:-0.766063080953;NFIL3:-0.773727312125;ETS1,2:-0.780149522063;GZF1:-0.817892133885;SREBF1,2:-0.833821740156;MED-1{core}:-0.839392931089;REST:-0.861029710127;FOX{D1,D2}:-0.870145712054;SOX5:-0.87070012268;TGIF1:-0.915541945245;GLI1..3:-0.926112372127;HES1:-0.927441711894;PAX3,7:-0.960173603718;NFATC1..3:-0.961665436875;IRF1,2:-0.96801019083;GTF2A1,2:-0.99826398999;ZBTB6:-1.00457121923;MYFfamily:-1.02325526903;MTF1:-1.0403458207;HSF1,2:-1.04142215325;VSX1,2:-1.04212600219;JUN:-1.05284394591;HMGA1,2:-1.06563147036;FOXO1,3,4:-1.08204613885;NANOG{mouse}:-1.0860502152;GCM1,2:-1.23614337574;TBP:-1.243282624;NHLH1,2:-1.29429294329;SRF:-1.32496774583;MAFB:-1.35050533598;HMX1:-1.37025462819;ZNF238:-1.41879801171;TLX2:-1.42504390787;HBP1_HMGB_SSRP1_UBTF:-1.53330505642;SMAD1..7,9:-1.53523469897;ATF6:-1.65623338812;TFAP4:-1.67213728144
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10845-111E8;search_select_hide=table117:FF:10845-111E8
}}
}}

Latest revision as of 15:09, 3 June 2020

Name:mesothelioma cell line:NCI-H28
Species:Human (Homo sapiens)
Library ID:CNhs13061
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemesothelium
dev stageNA
sexmale
age48
cell typemesothelial cell
cell lineNCI-H28
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005137
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13061 CAGE DRX007949 DRR008821
Accession ID Hg19

Library idBAMCTSS
CNhs13061 DRZ000246 DRZ001631
Accession ID Hg38

Library idBAMCTSS
CNhs13061 DRZ011596 DRZ012981
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.363
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.443
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.18
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0567
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.382
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0406
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.13
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.128
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.00163
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal1.214
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.424
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.15
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13061

Jaspar motifP-value
MA0002.20.0222
MA0003.10.047
MA0004.10.832
MA0006.10.605
MA0007.10.564
MA0009.10.965
MA0014.10.659
MA0017.10.037
MA0018.24.21886e-4
MA0019.10.744
MA0024.12.64967e-5
MA0025.10.43
MA0027.10.245
MA0028.12.27953e-11
MA0029.10.563
MA0030.10.306
MA0031.10.121
MA0035.20.172
MA0038.10.817
MA0039.20.118
MA0040.10.918
MA0041.10.0647
MA0042.10.0137
MA0043.10.42
MA0046.13.95335e-36
MA0047.20.253
MA0048.10.0183
MA0050.13.00954e-6
MA0051.10.00564
MA0052.15.44262e-4
MA0055.12.30107e-4
MA0057.10.681
MA0058.10.518
MA0059.10.158
MA0060.10.054
MA0061.10.375
MA0062.21.59011e-11
MA0065.20.0147
MA0066.10.893
MA0067.10.0419
MA0068.18.4021e-4
MA0069.10.781
MA0070.10.0853
MA0071.10.0151
MA0072.10.776
MA0073.10.871
MA0074.10.7
MA0076.19.44856e-13
MA0077.10.989
MA0078.10.621
MA0079.20.435
MA0080.29.67819e-9
MA0081.10.232
MA0083.11.13901e-4
MA0084.10.0549
MA0087.10.589
MA0088.10.0383
MA0090.10.812
MA0091.10.0757
MA0092.10.172
MA0093.10.676
MA0099.20.0877
MA0100.10.256
MA0101.10.66
MA0102.20.254
MA0103.10.0119
MA0104.20.0829
MA0105.10.898
MA0106.10.418
MA0107.10.15
MA0108.28.66783e-14
MA0111.10.905
MA0112.20.549
MA0113.10.601
MA0114.12.65405e-4
MA0115.10.00721
MA0116.10.574
MA0117.10.397
MA0119.10.377
MA0122.10.457
MA0124.10.359
MA0125.10.893
MA0131.10.355
MA0135.10.773
MA0136.15.51278e-5
MA0137.20.0884
MA0138.20.179
MA0139.10.184
MA0140.10.45
MA0141.16.10029e-5
MA0142.10.41
MA0143.10.826
MA0144.10.0682
MA0145.10.252
MA0146.10.934
MA0147.10.0306
MA0148.10.267
MA0149.10.184
MA0150.10.103
MA0152.10.496
MA0153.12.55133e-26
MA0154.10.328
MA0155.10.0992
MA0156.10.217
MA0157.10.0203
MA0159.10.0578
MA0160.10.195
MA0162.10.6
MA0163.10.0763
MA0164.10.807
MA0258.10.26
MA0259.10.0601



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13061

Novel motifP-value
10.153
100.112
1000.076
1010.312
1020.286
1030.4
1040.651
1050.345
1060.026
1070.0537
1080.423
1090.255
110.826
1100.401
1110.306
1120.354
1130.0997
1140.522
1150.729
1160.505
1170.264
1180.0799
1190.905
120.65
1200.776
1210.824
1220.745
1230.278
1240.284
1250.726
1260.939
1270.205
1285.87253e-4
1290.331
131.03006e-4
1300.827
1310.777
1320.246
1330.032
1340.327
1350.369
1360.00678
1370.149
1380.344
1390.203
140.551
1400.155
1410.542
1420.674
1430.0442
1440.969
1450.346
1460.827
1470.848
1480.919
1490.692
150.629
1500.878
1510.588
1520.028
1530.511
1540.394
1550.78
1560.823
1570.619
1580.532
1590.845
160.914
1600.365
1610.91
1620.696
1630.815
1640.836
1650.732
1660.739
1670.2
1680.87
1690.79
170.278
180.401
190.383
20.0778
200.164
210.964
220.619
230.0628
240.159
250.77
260.309
270.614
280.542
290.189
30.845
300.199
310.595
320.0705
330.656
340.0856
350.648
360.463
370.916
380.858
390.39
40.918
400.612
410.0128
420.788
430.576
440.107
450.564
460.56
470.473
480.734
490.525
50.202
500.902
510.327
520.0779
530.242
540.722
550.805
560.878
570.359
580.657
590.725
60.851
600.159
610.194
620.465
630.927
640.847
650.312
660.443
670.865
680.635
690.254
70.755
700.784
710.169
720.54
730.235
740.31
750.237
760.75
770.466
780.0162
790.355
80.931
800.00414
810.438
820.275
830.197
840.229
850.257
860.655
870.217
880.523
890.645
90.0378
900.37
910.0857
920.0887
930.989
940.134
950.791
960.582
970.469
980.602
990.768



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13061


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0100460 (fibrosarcoma cell line sample)
0102424 (mesothelioma cell line sample)
0103764 (NCI cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)

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