FF:14317-155D6: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005485 | ||
| | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005485!sRNA-Seq@SAMD00005485 | ||
|accession_numbers=CAGE;DRX008042;DRR008914;DRZ000339;DRZ001724;DRZ011689;DRZ013074 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057107;DRR062866;DRZ007942!sRNA-Seq;DRX036986;DRR041352;DRZ006994 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000065,UBERON:0001004 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002368 | |||
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|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000408,FF:0000350,FF:0000166,FF:0000406,FF:0000673 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr3:189507432..189507459,+!p1@TP63!2.42!262.50!TP63;;chr11:34642612..34642646,+!p1@EHF!2.27!186.06!EHF;;chr1:209979467..209979494,-!p1@IRF6!1.99!109.11!IRF6;;chr12:66218255..66218304,+!p3@HMGA2!1.89!197.29!HMGA2;;chr1:6479968..6479986,-!p1@HES2!1.73!52.58!HES2;;chr6:10415276..10415341,-!p2@TFAP2A!1.72!62.66!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.69!55.00!BNC1;;chr8:102504651..102504683,+!p1@GRHL2!1.69!48.11!GRHL2;;chr6:10412600..10412637,-!p1@TFAP2A!1.61!65.59!TFAP2A;;chr1:209979411..209979433,-!p2@IRF6!1.59!37.52!IRF6;;chr12:66218598..66218645,+!p2@HMGA2!1.58!162.32!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!1.54!63.04!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.51!45.30!HMGA2;;chr17:7493405..7493419,-!p1@SOX15!1.51!31.65!SOX15;;chrY:21906594..21906622,-!p1@KDM5D!1.50!30.37!KDM5D;;chr3:111314186..111314204,-!p1@ZBED2!1.48!28.97!ZBED2;;chr6:15246200..15246214,+!p2@JARID2!1.45!73.63!JARID2;;chr14:74256787..74256858,-!p6@C14orf43!1.43!25.65!C14orf43;;chr19:45971246..45971265,+!p1@FOSB!1.41!438.35!FOSB;;chr12:54785054..54785072,-!p4@ZNF385A!1.41!27.56!ZNF385A;;chr5:2751762..2751784,-!p1@IRX2!1.40!23.86!IRX2;;chr22:19748231..19748317,+!p1@TBX1!1.39!23.74!TBX1;;chr12:66218836..66218888,+!p1@HMGA2!1.38!205.97!HMGA2;;chr2:208030647..208030689,-!p1@KLF7!1.37!180.57!KLF7;;chr12:54785074..54785122,-!p2@ZNF385A!1.34!31.65!ZNF385A;;chr8:10588010..10588030,-!p1@SOX7!1.32!19.78!SOX7;;chr16:67881588..67881612,-!p2@CENPT!1.31!26.54!CENPT;;chr5:2751785..2751808,-!p2@IRX2!1.27!17.74!IRX2;;chr2:46524897..46524911,+!p2@EPAS1!1.25!46.20!EPAS1;;chr3:169381420..169381535,-!p1@MECOM!1.24!19.01!MECOM;;chr19:45908292..45908374,-!p1@PPP1R13L!1.23!140.12!PPP1R13L;;chr2:208394817..208394834,+!p3@CREB1!1.22!62.66!CREB1;;chr6:34524093..34524135,-!p1@SPDEF!1.20!14.93!SPDEF;;chr3:189507460..189507471,+!p3@TP63!1.18!14.04!TP63;;chrX:56258844..56258882,+!p1@KLF8!1.14!17.61!KLF8;;chr14:37131058..37131139,+!p1@PAX9!1.13!12.63!PAX9;;chr3:101568349..101568365,+!p1@NFKBIZ!1.12!628.75!NFKBIZ;;chr6:10415484..10415508,-!p3@TFAP2A!1.11!11.87!TFAP2A;;chr1:37945588..37945604,+!p3@ZC3H12A!1.11!11.74!ZC3H12A;;chr8:49833948..49833973,-!p2@SNAI2!1.08!69.93!SNAI2;;chr12:27485762..27485776,+!p3@ARNTL2!1.08!29.73!ARNTL2;;chr11:120107344..120107351,+!p1@POU2F3!1.08!13.53!POU2F3;;chr6:34524049..34524089,-!p2@SPDEF!1.07!10.72!SPDEF;;chr19:42636586..42636607,-!p1@POU2F2!1.06!29.35!POU2F2;;chr6:34524025..34524045,-!p3@SPDEF!1.06!10.46!SPDEF;;chr6:126240380..126240430,+!p2@NCOA7!1.05!26.67!NCOA7;;chr12:66218003..66218018,+!p9@HMGA2!1.04!12.25!HMGA2;;chr14:75745523..75745537,+!p1@FOS!1.03!1182.71!FOS;;chr13:73633131..73633149,+!p1@KLF5!1.03!105.79!KLF5;;chr2:122042770..122042785,-!p1@TFCP2L1!1.03!9.70!TFCP2L1;;chrY:2803415..2803468,+!p1@ZFY!1.03!9.70!ZFY;;chr6:15246217..15246228,+!p3@JARID2!1.02!16.84!JARID2;;chr12:66218152..66218174,+!p10@HMGA2!1.02!10.08!HMGA2;;chr11:34645791..34645836,+!p3@EHF!1.02!9.57!EHF;;chrX:85403445..85403479,+!p2@DACH2!1.02!9.44!DACH2;;chr12:66218573..66218596,+!p7@HMGA2!1.01!13.78!HMGA2;;chr19:52598958..52599026,-!p1@ZNF841!1.00!87.16!ZNF841;;chr17:7492684..7492778,-!p2@SOX15!1.00!19.27!SOX15;;chr12:66218378..66218401,+!p6@HMGA2!1.00!14.17!HMGA2;;chr8:102504690..102504704,+!p3@GRHL2!1.00!9.06!GRHL2;;chr18:42260840..42260860,+!p2@SETBP1!1.00!8.93!SETBP1;;chr8:49833978..49833996,-!p1@SNAI2!0.99!184.40!SNAI2;;chr11:47236584..47236679,+!p1@DDB2!0.99!96.99!DDB2;;chr6:10413188..10413249,-!p7@TFAP2A!0.98!8.55!TFAP2A;;chr4:87857474..87857489,+!p7@AFF1!0.97!14.93!AFF1;;chr6:10412576..10412599,-!p5@TFAP2A!0.97!8.42!TFAP2A;;chr15:67418047..67418093,+!p4@SMAD3!0.96!10.34!SMAD3;;chr2:60778035..60778060,-!p4@BCL11A!0.96!9.83!BCL11A;;chr1:201979703..201979721,+!p2@ELF3!0.96!8.04!ELF3;;chr3:141087339..141087387,+!p2@ZBTB38!0.95!84.22!ZBTB38;;chr14:62162285..62162296,+!p3@HIF1A!0.95!42.62!HIF1A;;chr11:34642656..34642667,+!p2@EHF!0.95!7.91!EHF;;chr1:61547811..61547837,+!p7@NFIA!0.94!11.36!NFIA;;chr7:28725740..28725778,+!p1@CREB5!0.93!69.80!CREB5;;chr1:24646263..24646277,+!p4@GRHL3!0.93!7.53!GRHL3;;chr11:16629261..16629284,-!p1@SOX6!0.93!7.53!SOX6;;chr18:42260920..42260951,+!p4@SETBP1!0.92!7.40!SETBP1;;chr8:102504979..102505010,+!p2@GRHL2!0.92!7.27!GRHL2;;chr1:158979792..158979814,+!p2@IFI16!0.91!71.72!IFI16;;chr3:111314230..111314241,-!p2@ZBED2!0.90!6.89!ZBED2;;chr17:80797886..80797906,-!p1@ZNF750!0.90!6.89!ZNF750;;chr1:37940170..37940190,+!p1@ZC3H12A!0.89!88.31!ZC3H12A;;chr2:70142232..70142251,+!p1@MXD1!0.89!40.33!MXD1;;chr11:6947720..6947812,+!p1@ZNF215!0.89!9.06!ZNF215;;chr21:36260343..36260402,-!p6@RUNX1!0.88!10.97!RUNX1;;chr20:3388238..3388323,-!p1@C20orf194!0.87!47.34!C20orf194;;chr6:126240442..126240459,+!p4@NCOA7!0.87!8.29!NCOA7;;chr18:42260861..42260882,+!p5@SETBP1!0.87!6.38!SETBP1;;chr12:66218420..66218439,+!p12@HMGA2!0.87!6.38!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.87!6.38!HMGA2;;chr2:238600933..238600985,+!p3@LRRFIP1!0.86!35.48!LRRFIP1;;chr20:45142154..45142227,-!p1@ZNF334!0.86!12.76!ZNF334;;chr14:38064429..38064486,-!p1@FOXA1!0.86!6.25!FOXA1;;chr3:32023232..32023273,+!p1@ZNF860!0.85!8.93!ZNF860;;chr11:6947647..6947698,+!p2@ZNF215!0.85!8.55!ZNF215;;chr9:14314566..14314618,-!p1@NFIB!0.84!76.06!NFIB;;chr1:61547894..61547968,+!p2@NFIA!0.84!18.38!NFIA;;chr2:166326200..166326216,+!p1@CSRNP3!0.84!8.93!CSRNP3;;chr12:66218443..66218461,+!p8@HMGA2!0.84!7.78!HMGA2;;chr10:31607335..31607354,+!p5@ZEB1!0.84!6.00!ZEB1;;chr3:141087562..141087594,+!p12@ZBTB38!0.84!6.00!ZBTB38;;chr12:66218923..66218934,+!p14@HMGA2!0.83!5.74!HMGA2;;chrY:21906623..21906637,-!p3@KDM5D!0.83!5.74!KDM5D;;chr5:137801160..137801176,+!p1@EGR1!0.82!606.29!EGR1;;chr1:61548225..61548299,+!p1@NFIA!0.82!78.74!NFIA;;chr21:30671235..30671253,+!p1@BACH1!0.82!76.70!BACH1;;chr14:62162258..62162269,+!p2@HIF1A!0.82!58.19!HIF1A;;chr6:168227552..168227609,+!p1@MLLT4!0.82!49.77!MLLT4;;chr13:41593425..41593480,-!p1@ELF1!0.82!38.54!ELF1;;chr2:178257401..178257432,-!p4@NFE2L2!0.82!33.94!NFE2L2;;chr2:208030886..208030917,-!p4@KLF7!0.82!11.23!KLF7;;chr2:169312600..169312606,+!p2@CERS6!0.82!9.19!CERS6;;chr2:148779187..148779222,+!p5@MBD5!0.82!7.40!MBD5;;chr15:83953373..83953386,-!p2@BNC1!0.82!5.61!BNC1;;chr4:87856129..87856186,+!p1@AFF1!0.81!80.52!AFF1;;chr11:128392273..128392308,-!p2@ETS1!0.81!24.63!ETS1;;chr12:80084303..80084332,-!p1@PAWR!0.80!34.20!PAWR;;chr2:85360499..85360598,+!p1@TCF7L1!0.80!32.16!TCF7L1;;chr1:61547781..61547809,+!p5@NFIA!0.80!11.23!NFIA;;chr6:15245797..15245818,+!p8@JARID2!0.80!6.51!JARID2;;chr3:69915385..69915438,+!p3@MITF!0.80!5.36!MITF;;chr6:15246261..15246312,+!p1@JARID2!0.79!137.44!JARID2;;chr18:72265084..72265143,+!p1@ZNF407!0.79!41.73!ZNF407;;chr5:138609782..138609826,+!p5@MATR3!0.79!36.62!MATR3;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!0.79!35.22!SNAPC4;;chr3:141087393..141087426,+!p3@ZBTB38!0.79!22.20!ZBTB38;;chr20:3388541..3388575,-!p2@C20orf194!0.79!21.82!C20orf194;;chr2:148778570..148778589,+!p4@MBD5!0.79!17.10!MBD5;;chr2:10091815..10091864,+!p1@GRHL1!0.79!7.15!GRHL1;;chr22:21771656..21771662,+!p1@HIC2!0.79!5.23!HIC2;;chr1:201979743..201979762,+!p1@ELF3!0.79!5.10!ELF3;;chr2:220094514..220094599,+!p1@ANKZF1!0.78!159.13!ANKZF1;;chr4:106068026..106068084,+!p1@TET2!0.78!49.13!TET2;;chr19:24269981..24270007,+!p2@ZNF254!0.78!35.09!ZNF254;;chrX:56258811..56258838,+!p2@KLF8!0.77!6.76!KLF8;;chr20:42136308..42136358,+!p2@L3MBTL1!0.77!6.64!L3MBTL;;chr10:3827389..3827408,-!p1@KLF6!0.76!407.72!KLF6;;chr1:59249688..59249703,-!p3@JUN!0.76!31.14!JUN;;chr19:9785724..9785740,-!p2@ZNF562!0.75!20.29!ZNF562;;chr13:74708372..74708409,-!p4@KLF12!0.75!11.49!KLF12;;chr21:36260295..36260310,-!p3@RUNX1!0.75!7.91!RUNX1;;chr12:125002827..125002855,-!p5@NCOR2!0.75!6.76!NCOR2;;chr5:43067636..43067674,+!p6@ZNF131!0.75!6.51!ZNF131;;chr8:128747661..128747703,+!p6@MYC!0.75!6.51!MYC;;chr20:55204351..55204377,+!p1@TFAP2C!0.75!6.13!TFAP2C;;chr19:9811347..9811351,-!p1@ZNF812!0.75!4.59!ZNF812;;chr1:209979449..209979460,-!p3@IRF6!0.75!4.59!IRF6;;chr16:86612320..86612394,+!p1@FOXL1!0.75!4.59!FOXL1;;chr3:169381183..169381205,-!p4@MECOM!0.75!4.59!MECOM;;chr10:21823128..21823216,+!p1@MLLT10!0.74!45.43!MLLT10;;chr2:231084639..231084654,-!p2@SP110!0.74!7.78!SP110;;chr6:1312325..1312340,+!p1@FOXQ1!0.74!7.66!FOXQ1;;chr2:63277948..63277974,+!p1@OTX1!0.74!4.47!OTX1;;chr1:209979375..209979386,-!p4@IRF6!0.74!4.47!IRF6;;chr1:2985726..2985752,+!p2@PRDM16!0.74!4.47!PRDM16;;chr8:128748308..128748324,+!p2@MYC!0.73!137.31!MYC;;chr12:77459306..77459365,-!p1@E2F7!0.73!60.74!E2F7;;chr2:148778652..148778672,+!p1@MBD5!0.73!60.49!MBD5;;chr6:116989916..116989979,-!p1@ZUFSP!0.73!45.69!ZUFSP;;chr6:28321971..28321995,-!p1@ZNF323!0.73!4.34!ZNF323;;chr1:2985760..2985774,+!p1@PRDM16!0.73!4.34!PRDM16;;chr3:88108381..88108450,+!p1@ENST00000473136!0.72!51.56!ZNF654;;chr1:158979851..158979865,+!p5@IFI16!0.72!10.08!IFI16;;chr3:42947600..42947680,+!p1@ZNF662!0.72!6.38!ZNF662;;chr6:28048343..28048354,+!p1@ZNF165!0.72!4.21!ZNF165;;chr1:249153268..249153298,-!p1@ZNF692!0.71!25.14!ZNF692;;chr12:96588279..96588299,+!p4@ELK3!0.71!21.95!ELK3;;chr1:158979872..158979898,+!p3@IFI16!0.71!13.91!IFI16;;chr7:113726357..113726443,+!p1@FOXP2!0.71!7.53!FOXP2;;chr7:86782094..86782108,+!p5@DMTF1!0.71!7.02!DMTF1;;chr4:87857491..87857519,+!p10@AFF1!0.71!6.00!AFF1;;chr19:58341656..58341694,+!p5@ZNF587!0.71!5.10!ZNF587;;chr7:99156011..99156036,+!p7@ZNF655!0.71!4.98!ZNF655;;chr3:101575889..101575903,+!p3@NFKBIZ!0.71!4.08!NFKBIZ;;chr21:36260980..36261011,-!p1@RUNX1!0.70!130.55!RUNX1;;chr2:169312725..169312810,+!p1@CERS6!0.70!112.04!CERS6;;chr16:73092898..73092931,-!p1@ZFHX3!0.70!17.23!ZFHX3;;chr4:87857433..87857472,+!p9@AFF1!0.70!7.66!AFF1;;chr12:80084279..80084293,-!p8@PAWR!0.70!7.02!PAWR;;chr14:69261310..69261326,-!p5@ZFP36L1!0.70!5.49!ZFP36L1;;chr16:67197654..67197716,+!p3@HSF4!0.70!3.96!HSF4;;chr16:67881647..67881663,-!p3@CENPT!0.70!3.96!CENPT;;chr4:103422499..103422632,+!p1@NFKB1!0.69!94.31!NFKB1;;chr19:9695169..9695188,-!p1@ZNF121!0.69!79.38!ZNF121;;chr3:168864315..168864339,-!p2@MECOM!0.69!6.89!MECOM;;chr3:5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TP63;;chr6:10412477..10412490,-!p10@TFAP2A!0.36!1.28!TFAP2A;;chr9:100615499..100615519,+!p1@FOXE1!0.36!1.28!FOXE1;;chr1:154975229..154975247,+!p6@ZBTB7B!0.36!1.28!ZBTB7B;;chr1:42800860..42800912,-!p1@FOXJ3!0.35!74.53!FOXJ3;;chr5:132299290..132299310,-!p2@AFF4!0.35!38.92!AFF4;;chr1:78149041..78149142,-!p1@ZZZ3!0.35!38.54!ZZZ3;;chr1:78444778..78444800,-!p2@FUBP1!0.35!35.35!FUBP1;;chr3:101395963..101395993,-!p1@ZBTB11!0.35!29.99!ZBTB11;;chr7:6746529..6746591,-!p1@ZNF12!0.35!27.44!ZNF12;;chr19:36208877..36208919,+!p1@MLL4!0.35!25.39!MLL4;;chr19:53193731..53193767,-!p1@ZNF83!0.35!17.87!ZNF83;;chr8:10697329..10697365,-!p2@PINX1,p2@SOX7!0.35!12.63!SOX7;;chr2:61108650..61108687,+!p2@REL!0.35!9.44!REL;;chr16:2059797..2059837,-!p1@ZNF598!0.35!7.66!ZNF598;;chr4:146402966..146402985,+!p2@SMAD1!0.35!6.89!SMAD1;;chr2:208030488..208030551,-!p3@KLF7!0.35!6.64!KLF7;;chr4:4291837..4291859,-!p2@LYAR!0.35!6.00!LYAR;;chr19:24097675..24097699,+!p1@ZNF726!0.35!6.00!ZNF726;;chr12:96588368..96588394,+!p3@ELK3!0.35!4.72!ELK3;;chr22:50247528..50247568,+!p2@ZBED4!0.35!4.21!ZBED4;;chr19:53970970..53971021,+!p1@ZNF813!0.35!4.08!ZNF813;;chr1:23694697..23694756,-!p3@ZNF436!0.35!3.96!ZNF436;;chr5:132299008..132299026,-!p5@AFF4!0.35!3.83!AFF4;;chrX:134478026..134478052,-!p2@ZNF75D!0.35!3.57!ZNF75D;;chr1:154975110..154975149,+!p2@ZBTB7B!0.35!3.57!ZBTB7B;;chr14:64970427..64970457,+!p3@ZBTB1!0.35!3.32!ZBTB1;;chr11:85376097..85376108,-!p2@CREBZF!0.35!3.06!CREBZF;;chrX:48900782..48900793,-!p3@TFE3!0.35!3.06!TFE3;;chr7:86781858..86781879,+!p3@DMTF1!0.35!2.55!DMTF1;;chr9:14313893..14313908,-!p7@NFIB!0.35!2.17!NFIB;;chr8:28747944..28747955,+!p5@HMBOX1!0.35!1.66!HMBOX1;;chr8:28748052..28748063,+!p4@HMBOX1!0.35!1.66!HMBOX1;;chr10:3818891..3818895,-!p6@KLF6!0.35!1.66!KLF6;;chr14:69259772..69259790,-!p1@ZFP36L1!0.34!203.54!ZFP36L1;;chr2:231280908..231280945,+!p1@SP100!0.34!75.93!SP100;;chr9:33290491..33290564,+!p1@NFX1!0.34!72.23!NFX1;;chr14:105886150..105886224,+!p1@MTA1!0.34!66.87!MTA1;;chrX:77041685..77041716,-!p1@ATRX!0.34!55.77!ATRX;;chr16:11891048..11891130,-!p1@ZC3H7A!0.34!38.54!ZC3H7A;;chr6:35464817..35464894,-!p1@TEAD3!0.34!29.99!TEAD3;;chr19:50169064..50169121,-!p1@IRF3!0.34!27.56!IRF3;;chr19:20844368..20844407,-!p1@ZNF626!0.34!27.56!ZNF626;;chr22:42666624..42666673,-!p@chr22:42666624..42666673,-!0.34!21.18!TCF20;;chr7:17338239..17338262,+!p2@AHR!0.34!14.04!AHR;;chr10:43134001..43134026,-!p1@ZNF33B!0.34!8.29!ZNF33B;;chr9:128509663..128509715,+!p1@PBX3!0.34!6.13!PBX3;;chr7:99156314..99156372,+!p4@ZNF655!0.34!5.87!ZNF655;;chr1:8585945..8586056,-!p3@RERE!0.34!5.87!RERE;;chr1:161736140..161736151,+!p3@ATF6!0.34!5.49!ATF6;;chr6:56954867..56954882,+!p2@ZNF451!0.34!5.10!ZNF451;;chr19:8942962..8942987,-!p1@ZNF558!0.34!4.72!ZNF558;;chr19:31840313..31840380,-!p1@TSHZ3!0.34!4.34!TSHZ3;;chr18:3449720..3449749,+!p2@TGIF1!0.34!3.45!TGIF1;;chr10:44101902..44101932,+!p2@ZNF485!0.34!3.32!ZNF485;;chr20:50808667..50808729,-!p3@ZFP64!0.34!3.06!ZFP64;;chr1:91487806..91487826,-!p5@ZNF644!0.34!2.68!ZNF644;;chr5:172484377..172484418,+!p2@C5orf41!0.34!2.55!CREBRF;;chr9:20621927..20621996,-!p3@MLLT3!0.34!2.55!MLLT3;;chrX:83757493..83757508,-!p2@HDX!0.34!2.04!HDX;;chr19:58874112..58874125,-!p1@ZNF497,p5@A1BG!0.34!2.04!ZNF497;;chr18:14132422..14132440,-!p1@ZNF519!0.34!1.91!ZNF519;;chr15:37391588..37391604,-!p11@MEIS2!0.34!1.79!MEIS2;;chr6:126240356..126240379,+!p7@NCOA7!0.34!1.66!NCOA7;;chr7:28725715..28725727,+!p3@CREB5!0.34!1.53!CREB5;;chr19:24269971..24269980,+!p6@ZNF254!0.34!1.53!ZNF254;;chr1:61548118..61548129,+!p9@NFIA!0.34!1.40!NFIA;;chr17:16118835..16118867,-!p1@NCOR1!0.33!63.68!NCOR1;;chr5:149380256..149380343,+!p1@HMGXB3!0.33!57.43!HMGXB3;;chr3:170075436..170075520,+!p1@SKIL!0.33!41.47!SKIL;;chr14:68283291..68283323,-!p1@ZFYVE26!0.33!32.03!ZFYVE26;;chr3:126194707..126194798,-!p1@ZXDC!0.33!31.52!ZXDC;;chr12:122516646..122516668,+!p1@MLXIP!0.33!26.03!MLXIP;;chr3:129158715..129158766,-!p2@MBD4!0.33!17.99!MBD4;;chr3:178789522..178789564,-!p2@ZMAT3!0.33!13.53!ZMAT3;;chr15:67357924..67357952,+!p2@SMAD3!0.33!12.25!SMAD3;;chr7:64838786..64838809,+!p2@ZNF92!0.33!10.46!ZNF92;;chr19:58361185..58361235,+!p2@ZNF587!0.33!9.83!ZNF587;;chr6:20403826..20403886,+!p2@E2F3!0.33!8.93!E2F3;;chr20:46130672..46130686,+!p2@NCOA3!0.33!8.04!NCOA3;;chr19:23433144..23433204,-!p1@ZNF724P!0.33!8.04!ZNF724P;;chr3:187463179..187463201,-!p2@BCL6!0.33!7.27!BCL6;;chr3:101395936..101395962,-!p2@ZBTB11!0.33!6.89!ZBTB11;;chr7:99156212..99156244,+!p3@ZNF655!0.33!6.76!ZNF655;;chrX:47696275..47696335,+!p1@ZNF81!0.33!6.25!ZNF81;;chr19:22034809..22034878,-!p2@ZNF43!0.33!6.13!ZNF43;;chr19:37096194..37096235,+!p1@ZNF382!0.33!5.49!ZNF382;;chr19:37341752..37341816,+!p1@ZNF345!0.33!5.23!ZNF345;;chr8:67525473..67525518,-!p1@MYBL1!0.33!3.70!MYBL1;;chr15:90895471..90895543,+!p1@ZNF774!0.33!3.57!ZNF774;;chrX:77041657..77041668,-!p2@ATRX!0.33!3.19!ATRX;;chr6:170863498..170863514,+!p3@TBP!0.33!2.68!TBP;;chr7:74072193..74072218,+!p4@GTF2I!0.33!2.55!GTF2I;;chr12:46123273..46123329,+!p3@ARID2!0.33!2.55!ARID2;;chr19:1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| |||
|ffid_belonging_in_development=CL:0000223 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 66: | Line 42: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|is_a=EFO:0002091;;FF: | |hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12583.14317-155D6.hg19.nobarcode.bam | ||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12583.14317-155D6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12583.14317-155D6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12583.14317-155D6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12583.14317-155D6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:14317-155D6 | |||
|is_a=EFO:0002091;;FF:0000673 | |||
|is_obsolete= | |||
|library_id=CNhs12583 | |||
|library_id_phase_based=2:CNhs12583 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14317 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GATCAG.14317 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14317 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GATCAG.14317 | |||
|name=Small Airway Epithelial Cells, donor3 (nuclear fraction) | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs12583,LSID912,release012,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=SRhi10014,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0.0521599633818348,0,0,0.0521599633818348,0,0,0,-0.0615963026459153,0.0987217274404708,-0.0304510506658849,-0.143795106188498,0,0,0,0,0,0,0,0,0.424712663606975,0,0.140771348502962,0.305545189218096,0,-0.0546012829079568,0,0,0.0260799816909174,0.311123481521562,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0.0260799816909174,0,0,0,0.305545189218096,0,-0.0545963646071028,0,0,0,0.0521599633818348,0,0,0,0,0.125320501341897,0,0,0,0,0,0.0164763053507802,0,0.0437789872603572,0,0,0.437271492709458,0,0,0,0,0,0,0,0,0.0521599633818348,0,0,0,0,0.0521599633818348,0,0,0.0505640923497861,0.148319919340066,0,0,0.0987217274404708,0.094787057891581,0,0.0064207898644445,0.0348177583083127,0.0260799816909174,0,0,-0.0383407072032771,0.405154133096478,0.0260799816909174,0.179106597910867,0.0260799816909174,0,0.234102920083151,-0.0863172374190606,0,0,0,0.179106597910867,0,0,0,0,0,0,0.515175042005056,0.140771348502962,0,0,0,0,0,0.186368412132507,0.0521599633818348,0,0.0260799816909174,-0.0315910400746398,-0.270152669853231,0,0,0.015232905624051,0,0,0 | |||
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| |||
|rna_box=155 | |||
|rna_catalog_number=N/A | |||
|rna_concentration=0.24469 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0 | |||
|rna_lot_number= | |||
|rna_od260/230=1.9 | |||
|rna_od260/280=2.04 | |||
|rna_position=D6 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=155D6 | |||
|rna_weight_ug=6.60663 | |||
|rnaseq_library_id=RDhi10013!SRhi10014.GATCAG | |||
|sample_age=50 | |||
|sample_category=fractionations and perturbations | |||
|sample_cell_catalog=CC-2547 | |||
|sample_cell_line= | |||
|sample_cell_lot=lot:8F3145 | |||
|sample_cell_type=pneumocyte | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=Lonza | |||
|sample_description= | |||
|sample_dev_stage=50 years old adult | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity=C | |||
|sample_experimental_condition=nuclear RNA | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.02925869437703e-234!GO:0043226;organelle;2.68567376514117e-181!GO:0043229;intracellular organelle;8.20131857380212e-181!GO:0043231;intracellular membrane-bound organelle;3.57639153188695e-163!GO:0043227;membrane-bound organelle;5.91741296831442e-163!GO:0005737;cytoplasm;3.30672763790496e-161!GO:0044422;organelle part;2.09607766297233e-119!GO:0044446;intracellular organelle part;3.93835994674322e-118!GO:0044238;primary metabolic process;7.14684636997626e-91!GO:0043170;macromolecule metabolic process;9.42639726436699e-90!GO:0044444;cytoplasmic part;2.29686747766167e-87!GO:0044237;cellular metabolic process;3.13559155757012e-86!GO:0005634;nucleus;5.22920688654229e-84!GO:0005515;protein binding;5.19833377681218e-75!GO:0032991;macromolecular complex;2.02736819472919e-69!GO:0044428;nuclear part;6.06214782160428e-68!GO:0003723;RNA binding;5.01084213801969e-64!GO:0043233;organelle lumen;7.69193595453113e-62!GO:0031974;membrane-enclosed lumen;7.69193595453113e-62!GO:0043283;biopolymer metabolic process;6.65925187312898e-61!GO:0030529;ribonucleoprotein complex;4.75460345835295e-56!GO:0019538;protein metabolic process;8.2566608202496e-55!GO:0016043;cellular component organization and biogenesis;2.81273938490264e-52!GO:0033036;macromolecule localization;2.46139654474857e-48!GO:0044267;cellular protein metabolic process;3.49496379872923e-47!GO:0015031;protein transport;5.13400171880005e-47!GO:0044260;cellular macromolecule metabolic process;1.65001171754737e-46!GO:0006396;RNA processing;1.89201808580046e-45!GO:0031981;nuclear lumen;3.79598866238093e-45!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.63903555757933e-44!GO:0008104;protein localization;2.21147846457801e-43!GO:0010467;gene expression;1.05148472816573e-42!GO:0045184;establishment of protein localization;1.24369511721173e-42!GO:0046907;intracellular transport;6.42802709838351e-41!GO:0043228;non-membrane-bound organelle;1.80940052849462e-38!GO:0043232;intracellular non-membrane-bound organelle;1.80940052849462e-38!GO:0031090;organelle membrane;3.08764319349982e-37!GO:0043234;protein complex;1.25374428010185e-36!GO:0006412;translation;1.28720520332917e-36!GO:0000166;nucleotide binding;6.4824595308704e-36!GO:0006996;organelle organization and biogenesis;6.21969286138185e-35!GO:0016071;mRNA metabolic process;8.2875724439873e-35!GO:0006886;intracellular protein transport;1.34042802018073e-34!GO:0065003;macromolecular complex assembly;1.09937398067422e-32!GO:0005739;mitochondrion;9.50735788088058e-32!GO:0005840;ribosome;3.87772566034111e-30!GO:0005829;cytosol;1.55998981024205e-29!GO:0006259;DNA metabolic process;1.60348349784202e-29!GO:0008380;RNA splicing;2.59082942483371e-29!GO:0009058;biosynthetic process;7.08559007223971e-29!GO:0006397;mRNA processing;1.05507023032639e-28!GO:0022607;cellular component assembly;1.33078636181157e-28!GO:0003676;nucleic acid binding;8.38099238184108e-28!GO:0005654;nucleoplasm;2.09765511078883e-27!GO:0051649;establishment of cellular localization;2.63736120665263e-27!GO:0009059;macromolecule biosynthetic process;2.88851554254073e-27!GO:0051641;cellular localization;3.39040294445802e-27!GO:0032553;ribonucleotide binding;1.83687877141897e-26!GO:0032555;purine ribonucleotide binding;1.83687877141897e-26!GO:0044249;cellular biosynthetic process;3.09766470021611e-26!GO:0017076;purine nucleotide binding;3.17446282657618e-26!GO:0003735;structural constituent of ribosome;7.05170026825283e-26!GO:0005524;ATP binding;1.0871894809869e-25!GO:0032559;adenyl ribonucleotide binding;3.33059670835436e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.84322688036609e-25!GO:0031967;organelle envelope;6.71685295035759e-25!GO:0030554;adenyl nucleotide binding;1.08067790167512e-24!GO:0007049;cell cycle;1.09070392616093e-24!GO:0031975;envelope;1.37123148148675e-24!GO:0033279;ribosomal subunit;1.81104413277772e-24!GO:0016874;ligase activity;3.53885573323435e-24!GO:0016070;RNA metabolic process;4.56857754190097e-24!GO:0043412;biopolymer modification;1.01195203106656e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.22950425457975e-22!GO:0006512;ubiquitin cycle;3.38790594190303e-22!GO:0044451;nucleoplasm part;2.50780696537729e-21!GO:0006464;protein modification process;5.08407048981036e-21!GO:0044429;mitochondrial part;1.28564505041445e-20!GO:0016462;pyrophosphatase activity;1.53067427028062e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.39473920241856e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.00012217354137e-20!GO:0017111;nucleoside-triphosphatase activity;3.64480965959297e-20!GO:0043687;post-translational protein modification;3.64480965959297e-20!GO:0005681;spliceosome;4.80694303042328e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;9.44589832613761e-20!GO:0006511;ubiquitin-dependent protein catabolic process;1.07072465845383e-19!GO:0006974;response to DNA damage stimulus;1.08462384545853e-19!GO:0012505;endomembrane system;1.45886171399747e-19!GO:0019941;modification-dependent protein catabolic process;1.90383634785581e-19!GO:0043632;modification-dependent macromolecule catabolic process;1.90383634785581e-19!GO:0044257;cellular protein catabolic process;2.3433907316661e-19!GO:0044445;cytosolic part;9.02275857740572e-19!GO:0044265;cellular macromolecule catabolic process;1.06871277138039e-18!GO:0005730;nucleolus;2.99062659091533e-18!GO:0043285;biopolymer catabolic process;4.38395482982339e-18!GO:0006605;protein targeting;6.5304004163493e-18!GO:0022402;cell cycle process;8.46393782149606e-18!GO:0030163;protein catabolic process;1.00325210946646e-16!GO:0004386;helicase activity;1.2703504604346e-16!GO:0006281;DNA repair;1.72901672254196e-16!GO:0005794;Golgi apparatus;1.8356949665725e-16!GO:0009057;macromolecule catabolic process;6.28916364935104e-16!GO:0048770;pigment granule;1.12177340397377e-15!GO:0042470;melanosome;1.12177340397377e-15!GO:0050794;regulation of cellular process;2.05761726266295e-15!GO:0008134;transcription factor binding;3.49208027201073e-15!GO:0022618;protein-RNA complex assembly;4.59606850455816e-15!GO:0006913;nucleocytoplasmic transport;8.28250347609899e-15!GO:0006461;protein complex assembly;9.2545052262366e-15!GO:0051169;nuclear transport;1.56171862384776e-14!GO:0048193;Golgi vesicle transport;1.7148676939431e-14!GO:0000278;mitotic cell cycle;2.47294073178306e-14!GO:0009719;response to endogenous stimulus;2.78842915655522e-14!GO:0006457;protein folding;3.14253869900955e-14!GO:0016192;vesicle-mediated transport;6.5454183753942e-14!GO:0008135;translation factor activity, nucleic acid binding;6.88434317072892e-14!GO:0016604;nuclear body;1.30561595710491e-13!GO:0005635;nuclear envelope;1.56358009780615e-13!GO:0015935;small ribosomal subunit;2.22890920145432e-13!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.54338423585939e-13!GO:0051276;chromosome organization and biogenesis;3.59298003947547e-13!GO:0031965;nuclear membrane;3.883414087659e-13!GO:0051726;regulation of cell cycle;5.70744261881036e-13!GO:0000074;regulation of progression through cell cycle;6.03557769301764e-13!GO:0005783;endoplasmic reticulum;6.77200344815633e-13!GO:0005740;mitochondrial envelope;8.68212843631729e-13!GO:0008026;ATP-dependent helicase activity;8.9378712466335e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.32597242875885e-12!GO:0016607;nuclear speck;1.77652050599592e-12!GO:0031966;mitochondrial membrane;1.83536545699574e-12!GO:0004842;ubiquitin-protein ligase activity;2.1300651826552e-12!GO:0008639;small protein conjugating enzyme activity;2.7000976102782e-12!GO:0044248;cellular catabolic process;2.71295235249184e-12!GO:0016887;ATPase activity;2.97408469408394e-12!GO:0003743;translation initiation factor activity;4.62390140405385e-12!GO:0012501;programmed cell death;5.36299796101762e-12!GO:0044432;endoplasmic reticulum part;6.62009375044997e-12!GO:0044453;nuclear membrane part;8.89275039195391e-12!GO:0006915;apoptosis;9.22018354915631e-12!GO:0042623;ATPase activity, coupled;1.00930588965619e-11!GO:0008565;protein transporter activity;1.449919961293e-11!GO:0019787;small conjugating protein ligase activity;1.52023695328057e-11!GO:0015934;large ribosomal subunit;1.54800292552063e-11!GO:0019866;organelle inner membrane;1.65921092073673e-11!GO:0006260;DNA replication;2.39568520650339e-11!GO:0016740;transferase activity;4.15644874861009e-11!GO:0006403;RNA localization;4.57009098539888e-11!GO:0006399;tRNA metabolic process;5.28926069667049e-11!GO:0016881;acid-amino acid ligase activity;6.89618607447861e-11!GO:0031980;mitochondrial lumen;8.49414739496469e-11!GO:0005759;mitochondrial matrix;8.49414739496469e-11!GO:0008219;cell death;8.56976379501249e-11!GO:0016265;death;8.56976379501249e-11!GO:0050657;nucleic acid transport;9.45840817504533e-11!GO:0051236;establishment of RNA localization;9.45840817504533e-11!GO:0050658;RNA transport;9.45840817504533e-11!GO:0005643;nuclear pore;1.06600368416481e-10!GO:0000087;M phase of mitotic cell cycle;1.26148696331027e-10!GO:0042254;ribosome biogenesis and assembly;1.27083409045078e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.64731840459852e-10!GO:0005694;chromosome;1.86256953768252e-10!GO:0015630;microtubule cytoskeleton;1.86256953768252e-10!GO:0050789;regulation of biological process;1.86256953768252e-10!GO:0007067;mitosis;2.51420021806088e-10!GO:0006413;translational initiation;2.9639627556526e-10!GO:0048523;negative regulation of cellular process;3.12716764663179e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.24739157346076e-10!GO:0006119;oxidative phosphorylation;3.60822552088086e-10!GO:0000502;proteasome complex (sensu Eukaryota);3.98169740358473e-10!GO:0005743;mitochondrial inner membrane;4.31715732121763e-10!GO:0006323;DNA packaging;6.02395553626883e-10!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.23349274871371e-10!GO:0051082;unfolded protein binding;6.79044501914913e-10!GO:0051301;cell division;7.23259860614935e-10!GO:0017038;protein import;7.39841475648449e-10!GO:0006793;phosphorus metabolic process;7.7056349070938e-10!GO:0006796;phosphate metabolic process;7.7056349070938e-10!GO:0022403;cell cycle phase;9.05102869814326e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;9.05102869814326e-10!GO:0000375;RNA splicing, via transesterification reactions;9.05102869814326e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.05102869814326e-10!GO:0003712;transcription cofactor activity;2.58382634387816e-09!GO:0006446;regulation of translational initiation;2.78057406494187e-09!GO:0048475;coated membrane;3.69670363852524e-09!GO:0030117;membrane coat;3.69670363852524e-09!GO:0051028;mRNA transport;3.99330060852503e-09!GO:0006366;transcription from RNA polymerase II promoter;4.24548068368751e-09!GO:0005813;centrosome;5.41807888334282e-09!GO:0043623;cellular protein complex assembly;6.78899268613144e-09!GO:0051170;nuclear import;7.21675887813632e-09!GO:0051186;cofactor metabolic process;8.87156601791899e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.37233909886397e-09!GO:0048519;negative regulation of biological process;1.08378566732568e-08!GO:0005793;ER-Golgi intermediate compartment;1.22688673227701e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.51815838800166e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.51815838800166e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.51815838800166e-08!GO:0006606;protein import into nucleus;1.54465169654842e-08!GO:0005789;endoplasmic reticulum membrane;1.64981520553476e-08!GO:0043038;amino acid activation;1.64981520553476e-08!GO:0006418;tRNA aminoacylation for protein translation;1.64981520553476e-08!GO:0043039;tRNA aminoacylation;1.64981520553476e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.73769179028965e-08!GO:0044427;chromosomal part;1.91140403023718e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.91140403023718e-08!GO:0005768;endosome;1.95063940062168e-08!GO:0005815;microtubule organizing center;2.26882012927353e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.48528166164643e-08!GO:0004674;protein serine/threonine kinase activity;2.48528166164643e-08!GO:0046930;pore complex;2.48528166164643e-08!GO:0006732;coenzyme metabolic process;2.6831035986351e-08!GO:0032446;protein modification by small protein conjugation;3.15776901838131e-08!GO:0000279;M phase;3.88443213955698e-08!GO:0016567;protein ubiquitination;3.92332598797469e-08!GO:0016568;chromatin modification;3.97596864958118e-08!GO:0016310;phosphorylation;4.31209768091928e-08!GO:0044455;mitochondrial membrane part;4.31928809216319e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.32269926798147e-08!GO:0043067;regulation of programmed cell death;5.55299554387089e-08!GO:0030120;vesicle coat;5.57408761281519e-08!GO:0030662;coated vesicle membrane;5.57408761281519e-08!GO:0042981;regulation of apoptosis;6.08683837277616e-08!GO:0019899;enzyme binding;7.65288257049037e-08!GO:0065002;intracellular protein transport across a membrane;1.00558312005022e-07!GO:0044431;Golgi apparatus part;1.34317458802679e-07!GO:0009056;catabolic process;1.69573798900909e-07!GO:0019222;regulation of metabolic process;2.01893182630871e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.0361545913644e-07!GO:0051246;regulation of protein metabolic process;2.94538246400464e-07!GO:0007010;cytoskeleton organization and biogenesis;3.69557090410017e-07!GO:0007243;protein kinase cascade;5.6685943697103e-07!GO:0043566;structure-specific DNA binding;5.73455131997948e-07!GO:0045786;negative regulation of progression through cell cycle;6.77959673374649e-07!GO:0016787;hydrolase activity;7.1620715718951e-07!GO:0003724;RNA helicase activity;7.23642328832654e-07!GO:0051188;cofactor biosynthetic process;8.77901675196966e-07!GO:0005819;spindle;8.94568616811391e-07!GO:0006163;purine nucleotide metabolic process;1.44006580195083e-06!GO:0031324;negative regulation of cellular metabolic process;1.56981845710221e-06!GO:0009259;ribonucleotide metabolic process;1.56981845710221e-06!GO:0006364;rRNA processing;1.69776324552957e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.04996607527519e-06!GO:0008092;cytoskeletal protein binding;2.23961011364817e-06!GO:0016564;transcription repressor activity;2.2482017206616e-06!GO:0016072;rRNA metabolic process;2.59812816136242e-06!GO:0006164;purine nucleotide biosynthetic process;2.62619257486117e-06!GO:0065007;biological regulation;2.68850519853025e-06!GO:0031252;leading edge;2.74536948735527e-06!GO:0005856;cytoskeleton;3.10140339472073e-06!GO:0030036;actin cytoskeleton organization and biogenesis;3.63837999679212e-06!GO:0009892;negative regulation of metabolic process;3.98621107443679e-06!GO:0000139;Golgi membrane;4.12138188274647e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.5667150449113e-06!GO:0000151;ubiquitin ligase complex;4.5667150449113e-06!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.72407659802019e-06!GO:0044440;endosomal part;5.84950846770091e-06!GO:0010008;endosome membrane;5.84950846770091e-06!GO:0051168;nuclear export;7.00453113374975e-06!GO:0009150;purine ribonucleotide metabolic process;7.00453113374975e-06!GO:0009108;coenzyme biosynthetic process;7.09547341430982e-06!GO:0048522;positive regulation of cellular process;7.79072086957523e-06!GO:0016779;nucleotidyltransferase activity;7.87315866444169e-06!GO:0009260;ribonucleotide biosynthetic process;7.92205714137395e-06!GO:0005746;mitochondrial respiratory chain;8.26915785945979e-06!GO:0005798;Golgi-associated vesicle;8.57875209320461e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.83522962573207e-06!GO:0007264;small GTPase mediated signal transduction;8.86416758499748e-06!GO:0009060;aerobic respiration;1.15913402877441e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.30452914823528e-05!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.49020352458704e-05!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.52187581725697e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.67070571788365e-05!GO:0016481;negative regulation of transcription;1.99200037271615e-05!GO:0005083;small GTPase regulator activity;2.13246840513958e-05!GO:0043069;negative regulation of programmed cell death;2.15935243009768e-05!GO:0003697;single-stranded DNA binding;2.23882152749833e-05!GO:0000785;chromatin;2.45612106553961e-05!GO:0030118;clathrin coat;2.46652286467097e-05!GO:0005761;mitochondrial ribosome;2.50899243403481e-05!GO:0000313;organellar ribosome;2.50899243403481e-05!GO:0045333;cellular respiration;2.52581934908721e-05!GO:0016301;kinase activity;2.58037589679459e-05!GO:0030029;actin filament-based process;2.65071853346268e-05!GO:0008270;zinc ion binding;2.7732293263245e-05!GO:0005769;early endosome;3.01320398645041e-05!GO:0009141;nucleoside triphosphate metabolic process;3.03887851053814e-05!GO:0003924;GTPase activity;3.14102575685677e-05!GO:0009967;positive regulation of signal transduction;3.17750815721856e-05!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.23379400955087e-05!GO:0031323;regulation of cellular metabolic process;3.26913038433306e-05!GO:0030695;GTPase regulator activity;3.33665775009005e-05!GO:0007265;Ras protein signal transduction;3.36112717580723e-05!GO:0016363;nuclear matrix;3.50889365618454e-05!GO:0008654;phospholipid biosynthetic process;3.99768841336021e-05!GO:0005667;transcription factor complex;3.99992988577256e-05!GO:0065009;regulation of a molecular function;4.2378131856913e-05!GO:0006916;anti-apoptosis;4.5228302840519e-05!GO:0009142;nucleoside triphosphate biosynthetic process;4.54345006705063e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.54345006705063e-05!GO:0043066;negative regulation of apoptosis;4.54861501829254e-05!GO:0008047;enzyme activator activity;4.55070075759121e-05!GO:0008186;RNA-dependent ATPase activity;4.55070075759121e-05!GO:0003690;double-stranded DNA binding;4.82524779204521e-05!GO:0015986;ATP synthesis coupled proton transport;4.98520195573645e-05!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.98520195573645e-05!GO:0050136;NADH dehydrogenase (quinone) activity;5.14506798233489e-05!GO:0003954;NADH dehydrogenase activity;5.14506798233489e-05!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.14506798233489e-05!GO:0009199;ribonucleoside triphosphate metabolic process;5.26368766161564e-05!GO:0016773;phosphotransferase activity, alcohol group as acceptor;5.76564499910663e-05!GO:0000059;protein import into nucleus, docking;5.8421882998266e-05!GO:0051427;hormone receptor binding;6.35094130040194e-05!GO:0005788;endoplasmic reticulum lumen;6.38092678027841e-05!GO:0003714;transcription corepressor activity;6.47047489586913e-05!GO:0006613;cotranslational protein targeting to membrane;6.48633298097037e-05!GO:0009117;nucleotide metabolic process;7.44725398784632e-05!GO:0042802;identical protein binding;7.64316090442784e-05!GO:0006333;chromatin assembly or disassembly;8.34696112362708e-05!GO:0065004;protein-DNA complex assembly;9.10655013664313e-05!GO:0003713;transcription coactivator activity;9.37236263924482e-05!GO:0042775;organelle ATP synthesis coupled electron transport;9.67303073407697e-05!GO:0042773;ATP synthesis coupled electron transport;9.67303073407697e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.82298011090981e-05!GO:0006350;transcription;9.96715761164416e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000100061280562063!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000100061280562063!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000111212923576069!GO:0009144;purine nucleoside triphosphate metabolic process;0.000111212923576069!GO:0035257;nuclear hormone receptor binding;0.000113538463049063!GO:0006261;DNA-dependent DNA replication;0.000123922907615924!GO:0006752;group transfer coenzyme metabolic process;0.000132916018589579!GO:0006402;mRNA catabolic process;0.000135493880601384!GO:0007005;mitochondrion organization and biogenesis;0.000146600512240826!GO:0004004;ATP-dependent RNA helicase activity;0.000147289809646721!GO:0006099;tricarboxylic acid cycle;0.000149073841585403!GO:0046356;acetyl-CoA catabolic process;0.000149073841585403!GO:0005770;late endosome;0.000149581721969539!GO:0000075;cell cycle checkpoint;0.000161680960396474!GO:0051329;interphase of mitotic cell cycle;0.000162216987877082!GO:0019829;cation-transporting ATPase activity;0.000162652579910338!GO:0031988;membrane-bound vesicle;0.000172279356625621!GO:0031982;vesicle;0.000179771362983186!GO:0016023;cytoplasmic membrane-bound vesicle;0.000202791374783515!GO:0016563;transcription activator activity;0.000203088374504443!GO:0005874;microtubule;0.000207432529726743!GO:0030532;small nuclear ribonucleoprotein complex;0.000207897584355389!GO:0030867;rough endoplasmic reticulum membrane;0.000208763952414702!GO:0003678;DNA helicase activity;0.000215337432720744!GO:0030964;NADH dehydrogenase complex (quinone);0.000218665037106176!GO:0045271;respiratory chain complex I;0.000218665037106176!GO:0005747;mitochondrial respiratory chain complex I;0.000218665037106176!GO:0008234;cysteine-type peptidase activity;0.000228832711184266!GO:0005096;GTPase activator activity;0.000244796833138396!GO:0048471;perinuclear region of cytoplasm;0.000247808509737237!GO:0010468;regulation of gene expression;0.000247808509737237!GO:0031410;cytoplasmic vesicle;0.000252599052870405!GO:0030119;AP-type membrane coat adaptor complex;0.000261254307781719!GO:0016853;isomerase activity;0.000261334539881012!GO:0030658;transport vesicle membrane;0.000267126091943208!GO:0045893;positive regulation of transcription, DNA-dependent;0.000281023324574826!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000292527528344219!GO:0030131;clathrin adaptor complex;0.000301740804617117!GO:0046914;transition metal ion binding;0.000311313147748168!GO:0016197;endosome transport;0.00031312547971494!GO:0001726;ruffle;0.000313741409121977!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;0.00034511795755974!GO:0000245;spliceosome assembly;0.000348432027726188!GO:0051325;interphase;0.000366386806338507!GO:0016859;cis-trans isomerase activity;0.000392864930871979!GO:0006612;protein targeting to membrane;0.000395621202945304!GO:0006754;ATP biosynthetic process;0.000421275175389751!GO:0006753;nucleoside phosphate metabolic process;0.000421275175389751!GO:0009966;regulation of signal transduction;0.000439368527122903!GO:0006084;acetyl-CoA metabolic process;0.000440057821834691!GO:0009109;coenzyme catabolic process;0.00047705105737616!GO:0048518;positive regulation of biological process;0.00047705105737616!GO:0006310;DNA recombination;0.000480653818619193!GO:0046034;ATP metabolic process;0.000511202816720586!GO:0006891;intra-Golgi vesicle-mediated transport;0.000515112059131043!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000560358409980982!GO:0008033;tRNA processing;0.000567853874904579!GO:0005905;coated pit;0.000603280387274498!GO:0006950;response to stress;0.000616523294311285!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000621297940301658!GO:0008094;DNA-dependent ATPase activity;0.000629729239871725!GO:0003729;mRNA binding;0.000629729239871725!GO:0005525;GTP binding;0.000664633964601396!GO:0050790;regulation of catalytic activity;0.000687481566766053!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000707285851910243!GO:0009055;electron carrier activity;0.0007469631864858!GO:0004576;oligosaccharyl transferase activity;0.000771727175988314!GO:0016469;proton-transporting two-sector ATPase complex;0.000781492644078364!GO:0045259;proton-transporting ATP synthase complex;0.00078833696361574!GO:0030660;Golgi-associated vesicle membrane;0.00080236474944477!GO:0051252;regulation of RNA metabolic process;0.00082565521165416!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00100079896960742!GO:0043021;ribonucleoprotein binding;0.00100133908490874!GO:0032774;RNA biosynthetic process;0.00104660772515113!GO:0019783;small conjugating protein-specific protease activity;0.0010864503715107!GO:0004843;ubiquitin-specific protease activity;0.00110480681081535!GO:0007242;intracellular signaling cascade;0.00110815261438508!GO:0004672;protein kinase activity;0.00112571007180759!GO:0005885;Arp2/3 protein complex;0.0011731018385881!GO:0006351;transcription, DNA-dependent;0.00117605231734963!GO:0006401;RNA catabolic process;0.00123786855398933!GO:0030132;clathrin coat of coated pit;0.00125341606390961!GO:0008250;oligosaccharyl transferase complex;0.00125341606390961!GO:0006302;double-strand break repair;0.00127985503377781!GO:0051052;regulation of DNA metabolic process;0.00129164013645087!GO:0005048;signal sequence binding;0.00132397754747069!GO:0016044;membrane organization and biogenesis;0.0013297207747688!GO:0051187;cofactor catabolic process;0.00141357233243359!GO:0033116;ER-Golgi intermediate compartment membrane;0.00143110323959624!GO:0003684;damaged DNA binding;0.0014595059363113!GO:0004221;ubiquitin thiolesterase activity;0.00152315373520609!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00152794940905996!GO:0044452;nucleolar part;0.00154398508402266!GO:0031968;organelle outer membrane;0.00163125087451979!GO:0032200;telomere organization and biogenesis;0.00163564340732058!GO:0000723;telomere maintenance;0.00163564340732058!GO:0006405;RNA export from nucleus;0.00164965919501987!GO:0019867;outer membrane;0.00174892693137563!GO:0005791;rough endoplasmic reticulum;0.00179917530970323!GO:0003682;chromatin binding;0.00194358145971556!GO:0008139;nuclear localization sequence binding;0.00197041350027835!GO:0051338;regulation of transferase activity;0.00199979985181177!GO:0015631;tubulin binding;0.00202386377405065!GO:0007050;cell cycle arrest;0.00202886345131628!GO:0030134;ER to Golgi transport vesicle;0.00206268511513324!GO:0005741;mitochondrial outer membrane;0.00208516770944323!GO:0007088;regulation of mitosis;0.00220350980331234!GO:0045892;negative regulation of transcription, DNA-dependent;0.00224895209071323!GO:0016791;phosphoric monoester hydrolase activity;0.00242027453401542!GO:0019843;rRNA binding;0.00259313382265897!GO:0000287;magnesium ion binding;0.00275861928500698!GO:0045941;positive regulation of transcription;0.00277041472495414!GO:0000776;kinetochore;0.00282244408368466!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00299465266197975!GO:0000775;chromosome, pericentric region;0.00305614161644754!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00310028103619447!GO:0030127;COPII vesicle coat;0.00310028103619447!GO:0012507;ER to Golgi transport vesicle membrane;0.00310028103619447!GO:0007017;microtubule-based process;0.00310194366466599!GO:0007266;Rho protein signal transduction;0.00314575535039474!GO:0016126;sterol biosynthetic process;0.00320508031137275!GO:0005839;proteasome core complex (sensu Eukaryota);0.00323498862655915!GO:0000922;spindle pole;0.00325771320925523!GO:0030027;lamellipodium;0.00326148509738172!GO:0007051;spindle organization and biogenesis;0.00326741077202339!GO:0045045;secretory pathway;0.00328699088409366!GO:0000209;protein polyubiquitination;0.0033330606662068!GO:0046578;regulation of Ras protein signal transduction;0.00350251651210075!GO:0030032;lamellipodium biogenesis;0.00350251651210075!GO:0008022;protein C-terminus binding;0.00352185137589529!GO:0015078;hydrogen ion transmembrane transporter activity;0.00352185137589529!GO:0030031;cell projection biogenesis;0.00356031458010405!GO:0005773;vacuole;0.00356810162028981!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00371353255364186!GO:0046467;membrane lipid biosynthetic process;0.00371353255364186!GO:0003899;DNA-directed RNA polymerase activity;0.00380921557242047!GO:0004298;threonine endopeptidase activity;0.00389619152671424!GO:0031625;ubiquitin protein ligase binding;0.00394379049302963!GO:0035258;steroid hormone receptor binding;0.004120077773159!GO:0000049;tRNA binding;0.00440658011768145!GO:0051789;response to protein stimulus;0.00460705718816357!GO:0006986;response to unfolded protein;0.00460705718816357!GO:0006289;nucleotide-excision repair;0.00478080994436071!GO:0030125;clathrin vesicle coat;0.00485377208481726!GO:0030665;clathrin coated vesicle membrane;0.00485377208481726!GO:0030521;androgen receptor signaling pathway;0.00486726108507219!GO:0032561;guanyl ribonucleotide binding;0.00486726108507219!GO:0019001;guanyl nucleotide binding;0.00486726108507219!GO:0007093;mitotic cell cycle checkpoint;0.00493103245379749!GO:0051920;peroxiredoxin activity;0.00497131361321604!GO:0046489;phosphoinositide biosynthetic process;0.0049919174506078!GO:0043549;regulation of kinase activity;0.0051281388207576!GO:0016311;dephosphorylation;0.00524353740077234!GO:0043065;positive regulation of apoptosis;0.0055448092785294!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00558480285834666!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00565271882610505!GO:0004721;phosphoprotein phosphatase activity;0.00565271882610505!GO:0045449;regulation of transcription;0.00576624556761952!GO:0018196;peptidyl-asparagine modification;0.00609066904853613!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00609066904853613!GO:0051128;regulation of cellular component organization and biogenesis;0.0062023760121052!GO:0043068;positive regulation of programmed cell death;0.00644998501928423!GO:0030659;cytoplasmic vesicle membrane;0.00654470792768762!GO:0016790;thiolester hydrolase activity;0.00664649107997279!GO:0006611;protein export from nucleus;0.00670304082602039!GO:0043087;regulation of GTPase activity;0.00678064281914193!GO:0015980;energy derivation by oxidation of organic compounds;0.0069091927511102!GO:0005099;Ras GTPase activator activity;0.0069091927511102!GO:0008610;lipid biosynthetic process;0.00724095081898818!GO:0006607;NLS-bearing substrate import into nucleus;0.00725275488625128!GO:0048500;signal recognition particle;0.00725275488625128!GO:0007004;telomere maintenance via telomerase;0.0073043629872388!GO:0048468;cell development;0.00730723680981791!GO:0000781;chromosome, telomeric region;0.00757388884159157!GO:0030663;COPI coated vesicle membrane;0.0077580719037875!GO:0030126;COPI vesicle coat;0.0077580719037875!GO:0009165;nucleotide biosynthetic process;0.00790106342976819!GO:0006892;post-Golgi vesicle-mediated transport;0.00793811025445463!GO:0045454;cell redox homeostasis;0.00853037065250241!GO:0005938;cell cortex;0.00853037065250241!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0086422825626588!GO:0006695;cholesterol biosynthetic process;0.00868326205535363!GO:0006468;protein amino acid phosphorylation;0.00898022654986148!GO:0004003;ATP-dependent DNA helicase activity;0.009073119283054!GO:0050681;androgen receptor binding;0.00907405273513793!GO:0006352;transcription initiation;0.00910079507419395!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00913583507362184!GO:0005876;spindle microtubule;0.00943906988834809!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00971368356734848!GO:0000323;lytic vacuole;0.00989753902650871!GO:0005764;lysosome;0.00989753902650871!GO:0032984;macromolecular complex disassembly;0.00994316736604571!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00998678210726495!GO:0006334;nucleosome assembly;0.0103257509699873!GO:0031532;actin cytoskeleton reorganization;0.0104005612764966!GO:0030137;COPI-coated vesicle;0.0105473982595506!GO:0050662;coenzyme binding;0.0107740777582308!GO:0046474;glycerophospholipid biosynthetic process;0.0107981946519807!GO:0006383;transcription from RNA polymerase III promoter;0.0109506283303474!GO:0007052;mitotic spindle organization and biogenesis;0.0112672220755318!GO:0051056;regulation of small GTPase mediated signal transduction;0.0113915960534179!GO:0030133;transport vesicle;0.0114773838253626!GO:0006414;translational elongation;0.0116940274626503!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0117067882639937!GO:0003779;actin binding;0.0118342991347811!GO:0006355;regulation of transcription, DNA-dependent;0.0119924007056029!GO:0016251;general RNA polymerase II transcription factor activity;0.0120538652013999!GO:0031072;heat shock protein binding;0.0121002722293712!GO:0008629;induction of apoptosis by intracellular signals;0.0122928759708969!GO:0017166;vinculin binding;0.0123248133909284!GO:0043241;protein complex disassembly;0.0124385663644311!GO:0032318;regulation of Ras GTPase activity;0.0128113155490328!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0129064383112907!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0129185162716479!GO:0045047;protein targeting to ER;0.0129185162716479!GO:0030384;phosphoinositide metabolic process;0.0129185162716479!GO:0044433;cytoplasmic vesicle part;0.0140955943716982!GO:0005637;nuclear inner membrane;0.0142683462758609!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.014351638003387!GO:0006417;regulation of translation;0.0146182948674516!GO:0043550;regulation of lipid kinase activity;0.0146182948674516!GO:0046822;regulation of nucleocytoplasmic transport;0.014836994074161!GO:0043414;biopolymer methylation;0.0149033145749924!GO:0045859;regulation of protein kinase activity;0.0151365020525289!GO:0016584;nucleosome positioning;0.0152321943546019!GO:0032259;methylation;0.0158808067355614!GO:0031901;early endosome membrane;0.0159463160700105!GO:0003711;transcription elongation regulator activity;0.0159463160700105!GO:0008243;plasminogen activator activity;0.01608493692514!GO:0008312;7S RNA binding;0.0161218097735205!GO:0006650;glycerophospholipid metabolic process;0.0161294935709168!GO:0030833;regulation of actin filament polymerization;0.0162050898397073!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0162203442411244!GO:0031497;chromatin assembly;0.0165044282849673!GO:0043488;regulation of mRNA stability;0.0169724160617053!GO:0043487;regulation of RNA stability;0.0169724160617053!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0170532622413591!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0170541786740892!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.017134676837969!GO:0051272;positive regulation of cell motility;0.0171722494371781!GO:0040017;positive regulation of locomotion;0.0171722494371781!GO:0008168;methyltransferase activity;0.017402732275981!GO:0040029;regulation of gene expression, epigenetic;0.017508506388279!GO:0031124;mRNA 3'-end processing;0.0175182061906694!GO:0016741;transferase activity, transferring one-carbon groups;0.0177226822193073!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0181345757648138!GO:0007030;Golgi organization and biogenesis;0.018310774612169!GO:0043624;cellular protein complex disassembly;0.018746350286019!GO:0030518;steroid hormone receptor signaling pathway;0.0198692539973471!GO:0005832;chaperonin-containing T-complex;0.020103947672818!GO:0008017;microtubule binding;0.0201869215595579!GO:0022406;membrane docking;0.0202949111719563!GO:0048278;vesicle docking;0.0202949111719563!GO:0012506;vesicle membrane;0.0208225363828587!GO:0007059;chromosome segregation;0.0208992592556045!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0209883878067551!GO:0048144;fibroblast proliferation;0.0209926988387997!GO:0048145;regulation of fibroblast proliferation;0.0209926988387997!GO:0005657;replication fork;0.0219828838983228!GO:0031123;RNA 3'-end processing;0.0220529782442379!GO:0042770;DNA damage response, signal transduction;0.0221201162269105!GO:0004527;exonuclease activity;0.0223676359367991!GO:0004681;casein kinase I activity;0.0242191770781616!GO:0006497;protein amino acid lipidation;0.0245357603609271!GO:0006904;vesicle docking during exocytosis;0.0246521363043596!GO:0005862;muscle thin filament tropomyosin;0.024948357006782!GO:0031529;ruffle organization and biogenesis;0.0259493377329666!GO:0043022;ribosome binding;0.0259780157670033!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0262068000378116!GO:0000082;G1/S transition of mitotic cell cycle;0.0265440580772901!GO:0006275;regulation of DNA replication;0.0271478582508053!GO:0007034;vacuolar transport;0.0272681850523583!GO:0051336;regulation of hydrolase activity;0.0272817864679728!GO:0004680;casein kinase activity;0.0274114451135493!GO:0006626;protein targeting to mitochondrion;0.0275870503957031!GO:0006839;mitochondrial transport;0.0279744875564701!GO:0048146;positive regulation of fibroblast proliferation;0.0280669875431643!GO:0030176;integral to endoplasmic reticulum membrane;0.028199489065353!GO:0006406;mRNA export from nucleus;0.0282475219840469!GO:0004702;receptor signaling protein serine/threonine kinase activity;0.0282475219840469!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0282475219840469!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0282475219840469!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0282475219840469!GO:0000086;G2/M transition of mitotic cell cycle;0.0282475219840469!GO:0000118;histone deacetylase complex;0.0283812678241436!GO:0006897;endocytosis;0.030781346039556!GO:0010324;membrane invagination;0.030781346039556!GO:0019904;protein domain specific binding;0.0314487340926991!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0315271852538723!GO:0015399;primary active transmembrane transporter activity;0.0315271852538723!GO:0032940;secretion by cell;0.031675038844753!GO:0004518;nuclease activity;0.0326031281369378!GO:0006338;chromatin remodeling;0.0327670919395503!GO:0000339;RNA cap binding;0.0332495492476232!GO:0033130;acetylcholine receptor binding;0.0335120083536373!GO:0007032;endosome organization and biogenesis;0.0342447872561771!GO:0043495;protein anchor;0.0345498099410282!GO:0005149;interleukin-1 receptor binding;0.0345498099410282!GO:0003677;DNA binding;0.0347900216780177!GO:0007006;mitochondrial membrane organization and biogenesis;0.0347900216780177!GO:0051539;4 iron, 4 sulfur cluster binding;0.0350255544553126!GO:0006378;mRNA polyadenylation;0.0372983393644975!GO:0046983;protein dimerization activity;0.0373069048194043!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0374224776589643!GO:0046966;thyroid hormone receptor binding;0.0377579980109537!GO:0008361;regulation of cell size;0.037815204467411!GO:0003746;translation elongation factor activity;0.0388869148478766!GO:0051098;regulation of binding;0.0400793600497284!GO:0001952;regulation of cell-matrix adhesion;0.0402424289709669!GO:0006278;RNA-dependent DNA replication;0.0403729422239772!GO:0031902;late endosome membrane;0.0411958784788192!GO:0031326;regulation of cellular biosynthetic process;0.0418753204367747!GO:0000792;heterochromatin;0.0423986676270308!GO:0000152;nuclear ubiquitin ligase complex;0.0424962697374947!GO:0009116;nucleoside metabolic process;0.0431069251583075!GO:0032508;DNA duplex unwinding;0.0438400003336077!GO:0032392;DNA geometric change;0.0438400003336077!GO:0003756;protein disulfide isomerase activity;0.0438400003336077!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0438400003336077!GO:0030911;TPR domain binding;0.0438400003336077!GO:0008426;protein kinase C inhibitor activity;0.04396444865792!GO:0004659;prenyltransferase activity;0.04396444865792!GO:0006470;protein amino acid dephosphorylation;0.0440189349307792!GO:0005762;mitochondrial large ribosomal subunit;0.0440651199588841!GO:0000315;organellar large ribosomal subunit;0.0440651199588841!GO:0009112;nucleobase metabolic process;0.0443655737179502!GO:0008283;cell proliferation;0.0446338077769633!GO:0007041;lysosomal transport;0.0454073155624483!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.046397374722027!GO:0033673;negative regulation of kinase activity;0.046397374722027!GO:0006469;negative regulation of protein kinase activity;0.046397374722027!GO:0008276;protein methyltransferase activity;0.0467270222098404!GO:0009889;regulation of biosynthetic process;0.0468014415783915!GO:0042158;lipoprotein biosynthetic process;0.0470055524876801!GO:0030433;ER-associated protein catabolic process;0.0470055524876801!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0470055524876801!GO:0004726;non-membrane spanning protein tyrosine phosphatase activity;0.0472627741358986!GO:0006376;mRNA splice site selection;0.0474140765211907!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0474140765211907!GO:0019371;cyclooxygenase pathway;0.0478876905032569!GO:0051348;negative regulation of transferase activity;0.0478876905032569!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0480097642634211!GO:0033559;unsaturated fatty acid metabolic process;0.0484685653825381!GO:0006636;unsaturated fatty acid biosynthetic process;0.0484685653825381!GO:0016788;hydrolase activity, acting on ester bonds;0.0484880298733788!GO:0005684;U2-dependent spliceosome;0.0485326421136165!GO:0042026;protein refolding;0.0485326421136165!GO:0042176;regulation of protein catabolic process;0.0488294065787524!GO:0051059;NF-kappaB binding;0.0488536108331134!GO:0006505;GPI anchor metabolic process;0.048858664321523!GO:0019900;kinase binding;0.0490538921385519!GO:0051540;metal cluster binding;0.0498071735347616!GO:0051536;iron-sulfur cluster binding;0.0498071735347616 | |||
|sample_id=14317 | |||
|sample_note= | |||
|sample_sex=male | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=lung | |||
|top_motifs=TP53:3.25364987107;TBX4,5:2.08816224083;ELK1,4_GABP{A,B1}:2.04935497626;FOXP1:1.8056025833;VSX1,2:1.72896047218;NKX2-1,4:1.70723681626;FOXN1:1.62383431313;SP1:1.61841808623;TEF:1.57842619925;HIF1A:1.56728889411;XCPE1{core}:1.53158286656;PITX1..3:1.51967666835;ONECUT1,2:1.47946658583;TEAD1:1.46147854878;ADNP_IRX_SIX_ZHX:1.43670087259;STAT1,3:1.3959422338;TLX2:1.35233894843;RBPJ:1.34662201895;ZBTB16:1.30242896194;HBP1_HMGB_SSRP1_UBTF:1.10985557485;ZEB1:1.10088158831;NRF1:1.0376582149;POU1F1:1.01257049458;FOS_FOS{B,L1}_JUN{B,D}:0.9521009122;ELF1,2,4:0.945317082804;SNAI1..3:0.936886440277;ZNF143:0.880431386886;CREB1:0.878720676386;NKX2-3_NKX2-5:0.840166022549;TFDP1:0.824483715487;MAZ:0.822286102475;ZFP161:0.765203759997;SOX17:0.730538346851;BACH2:0.676666614279;POU2F1..3:0.601485045341;PDX1:0.56816653206;FOSL2:0.547683803434;MED-1{core}:0.539498856979;FOXA2:0.522849554426;bHLH_family:0.510482607588;NKX3-2:0.454914396936;EP300:0.444721500873;NANOG:0.440697042218;HMGA1,2:0.427763828879;TFAP2{A,C}:0.418108124719;NFE2:0.410238342995;POU6F1:0.360643516124;NFY{A,B,C}:0.337521195222;STAT5{A,B}:0.329470985907;EGR1..3:0.316252380768;PAX2:0.308203672174;RFX2..5_RFXANK_RFXAP:0.304998868607;T:0.303699992012;AHR_ARNT_ARNT2:0.295025997707;GLI1..3:0.263088229705;NFIL3:0.260708691271;EN1,2:0.242356791692;ATF4:0.234134806162;FOXQ1:0.232112143627;E2F1..5:0.228204333708;TFAP2B:0.225568538076;SOX2:0.222873809085;SPZ1:0.221218653737;ZNF148:0.220417504326;CDX1,2,4:0.218716598104;NKX6-1,2:0.216932682449;PAX8:0.201552728671;IKZF1:0.201545490282;HOXA9_MEIS1:0.197100218736;ALX4:0.182151782705;EVI1:0.170343632261;DBP:0.142688059585;FOXL1:0.136339196323;HOX{A4,D4}:0.112652052438;CEBPA,B_DDIT3:0.107274288522;BPTF:0.0919234573404;GTF2A1,2:0.0749575340279;AR:0.0684862284401;ATF5_CREB3:0.0513943130329;ETS1,2:0.0505816528219;HLF:0.0485149106944;MTE{core}:0.0456653392741;MYBL2:0.0262149048244;FOX{D1,D2}:0.0157581457633;OCT4_SOX2{dimer}:0.00808487504161;GFI1:0.00474751496339;RFX1:0.00165246591495;GFI1B:-0.0178902830781;ARID5B:-0.0622371572514;TFCP2:-0.0724939358265;HMX1:-0.0748774344517;GTF2I:-0.0903387345163;HIC1:-0.0920055169627;IRF7:-0.0922778558007;LMO2:-0.0992644705675;GZF1:-0.0997265416111;ATF2:-0.134186691611;TOPORS:-0.135215564749;NFIX:-0.139178981092;NFKB1_REL_RELA:-0.156876269388;LHX3,4:-0.164770969095;RXR{A,B,G}:-0.169342493528;YY1:-0.176514783833;NKX3-1:-0.207663464369;MYB:-0.209124886752;PAX4:-0.238186669674;MTF1:-0.259674542624;SOX{8,9,10}:-0.265537334753;TLX1..3_NFIC{dimer}:-0.276270853905;NR1H4:-0.281572435123;MYOD1:-0.287523888531;PRRX1,2:-0.313598910332;BREu{core}:-0.322567002556;ALX1:-0.329173810373;PAX5:-0.33293258289;TBP:-0.337522248343;FOXO1,3,4:-0.360615740756;JUN:-0.362858888519;ZNF238:-0.365865196222;HNF1A:-0.368860640704;POU3F1..4:-0.380532096145;CDC5L:-0.384077462994;SPIB:-0.390966324483;SPI1:-0.404065277838;EBF1:-0.410469896758;SRF:-0.410756774071;MZF1:-0.413228088958;SMAD1..7,9:-0.416493726399;HSF1,2:-0.423303380318;LEF1_TCF7_TCF7L1,2:-0.431831559682;AIRE:-0.432968669694;NKX2-2,8:-0.445909860227;PRDM1:-0.464677258527;ZIC1..3:-0.493055065468;FOXM1:-0.523486422096;ZNF384:-0.523853426273;HAND1,2:-0.532585444619;CRX:-0.533377696748;CUX2:-0.552037350165;NFE2L2:-0.55775780379;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.56254537435;NR3C1:-0.578813200856;GATA6:-0.581606474524;SREBF1,2:-0.601497599927;RUNX1..3:-0.620152543028;PAX1,9:-0.620595165179;FOXP3:-0.622145250796;FOX{I1,J2}:-0.637931913956;PATZ1:-0.646295132053;GCM1,2:-0.66314681521;ZBTB6:-0.66355308797;TGIF1:-0.664269242645;NHLH1,2:-0.670449220995;HOX{A6,A7,B6,B7}:-0.674146559764;STAT2,4,6:-0.683401187514;NFATC1..3:-0.716875198504;HNF4A_NR2F1,2:-0.723069574474;KLF4:-0.726695418308;UFEwm:-0.757092840375;REST:-0.764320743306;PAX6:-0.774548300517;GATA4:-0.805001610744;ESR1:-0.819169482469;RREB1:-0.820706859728;IKZF2:-0.823807219638;MEF2{A,B,C,D}:-0.83273360637;HOX{A5,B5}:-0.865252657533;IRF1,2:-0.905674927015;MYFfamily:-0.939859390632;POU5F1:-0.958470618075;DMAP1_NCOR{1,2}_SMARC:-0.964720917445;NR5A1,2:-0.994479022957;NFE2L1:-1.02152032717;FOX{F1,F2,J1}:-1.08096120262;PAX3,7:-1.14507391056;FOXD3:-1.19143846676;PBX1:-1.19599044053;XBP1:-1.23615268242;RORA:-1.26224890954;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.34930597479;MAFB:-1.40448100583;PPARG:-1.42121626886;TAL1_TCF{3,4,12}:-1.42391582539;ZNF423:-1.46444593495;RXRA_VDR{dimer}:-1.47355019678;NANOG{mouse}:-1.47810399866;ATF6:-1.53297154212;TFAP4:-1.59578774643;NR6A1:-1.70525097666;SOX5:-1.88008336827;ESRRA:-2.22442466164;HES1:-2.51635578231 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14317-155D6;search_select_hide=table117:FF:14317-155D6 | |||
}} | }} |
Latest revision as of 19:06, 4 June 2020
Name: | Small Airway Epithelial Cells, donor3 (nuclear fraction) |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12583 |
Sample type: | fractionations and perturbations |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12583
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12583
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.137 |
10 | 10 | 0.139 |
100 | 100 | 0.994 |
101 | 101 | 0.482 |
102 | 102 | 0.725 |
103 | 103 | 0.159 |
104 | 104 | 0.842 |
105 | 105 | 0.919 |
106 | 106 | 0.011 |
107 | 107 | 0.168 |
108 | 108 | 0.441 |
109 | 109 | 0.502 |
11 | 11 | 0.0887 |
110 | 110 | 0.642 |
111 | 111 | 0.681 |
112 | 112 | 0.214 |
113 | 113 | 0.945 |
114 | 114 | 0.103 |
115 | 115 | 0.123 |
116 | 116 | 0.162 |
117 | 117 | 0.977 |
118 | 118 | 0.676 |
119 | 119 | 0.254 |
12 | 12 | 0.457 |
120 | 120 | 0.653 |
121 | 121 | 0.57 |
122 | 122 | 0.88 |
123 | 123 | 0.737 |
124 | 124 | 0.0173 |
125 | 125 | 0.31 |
126 | 126 | 0.521 |
127 | 127 | 0.44 |
128 | 128 | 0.0194 |
129 | 129 | 0.515 |
13 | 13 | 0.874 |
130 | 130 | 0.244 |
131 | 131 | 0.473 |
132 | 132 | 0.668 |
133 | 133 | 0.00237 |
134 | 134 | 0.258 |
135 | 135 | 0.0552 |
136 | 136 | 0.334 |
137 | 137 | 0.171 |
138 | 138 | 0.817 |
139 | 139 | 0.00693 |
14 | 14 | 0.903 |
140 | 140 | 0.321 |
141 | 141 | 0.631 |
142 | 142 | 0.132 |
143 | 143 | 0.00273 |
144 | 144 | 0.186 |
145 | 145 | 0.892 |
146 | 146 | 0.951 |
147 | 147 | 0.878 |
148 | 148 | 0.0118 |
149 | 149 | 0.0176 |
15 | 15 | 0.0274 |
150 | 150 | 0.641 |
151 | 151 | 0.513 |
152 | 152 | 0.871 |
153 | 153 | 0.875 |
154 | 154 | 0.968 |
155 | 155 | 0.753 |
156 | 156 | 0.65 |
157 | 157 | 0.536 |
158 | 158 | 0.599 |
159 | 159 | 0.343 |
16 | 16 | 0.219 |
160 | 160 | 0.0246 |
161 | 161 | 0.28 |
162 | 162 | 0.904 |
163 | 163 | 0.991 |
164 | 164 | 0.983 |
165 | 165 | 0.665 |
166 | 166 | 0.721 |
167 | 167 | 0.654 |
168 | 168 | 0.526 |
169 | 169 | 0.061 |
17 | 17 | 0.231 |
18 | 18 | 0.0145 |
19 | 19 | 0.0278 |
2 | 2 | 0.412 |
20 | 20 | 0.24 |
21 | 21 | 0.273 |
22 | 22 | 0.198 |
23 | 23 | 0.252 |
24 | 24 | 0.989 |
25 | 25 | 0.247 |
26 | 26 | 0.689 |
27 | 27 | 0.043 |
28 | 28 | 0.52 |
29 | 29 | 0.684 |
3 | 3 | 0.513 |
30 | 30 | 0.965 |
31 | 31 | 0.414 |
32 | 32 | 0.00379 |
33 | 33 | 0.985 |
34 | 34 | 0.303 |
35 | 35 | 0.0322 |
36 | 36 | 0.305 |
37 | 37 | 0.339 |
38 | 38 | 0.662 |
39 | 39 | 0.703 |
4 | 4 | 0.655 |
40 | 40 | 0.374 |
41 | 41 | 0.0787 |
42 | 42 | 0.643 |
43 | 43 | 0.133 |
44 | 44 | 0.00394 |
45 | 45 | 0.885 |
46 | 46 | 0.0505 |
47 | 47 | 0.278 |
48 | 48 | 0.608 |
49 | 49 | 0.0938 |
5 | 5 | 0.159 |
50 | 50 | 0.634 |
51 | 51 | 0.189 |
52 | 52 | 0.469 |
53 | 53 | 0.463 |
54 | 54 | 0.205 |
55 | 55 | 0.918 |
56 | 56 | 0.508 |
57 | 57 | 0.674 |
58 | 58 | 0.206 |
59 | 59 | 0.0185 |
6 | 6 | 0.725 |
60 | 60 | 0.145 |
61 | 61 | 0.416 |
62 | 62 | 0.0309 |
63 | 63 | 0.669 |
64 | 64 | 0.122 |
65 | 65 | 0.135 |
66 | 66 | 0.912 |
67 | 67 | 0.637 |
68 | 68 | 0.67 |
69 | 69 | 0.0853 |
7 | 7 | 0.507 |
70 | 70 | 0.148 |
71 | 71 | 0.237 |
72 | 72 | 0.376 |
73 | 73 | 0.961 |
74 | 74 | 0.0138 |
75 | 75 | 0.365 |
76 | 76 | 0.369 |
77 | 77 | 0.147 |
78 | 78 | 0.955 |
79 | 79 | 0.0148 |
8 | 8 | 0.0277 |
80 | 80 | 0.152 |
81 | 81 | 0.0688 |
82 | 82 | 0.0418 |
83 | 83 | 0.0575 |
84 | 84 | 0.862 |
85 | 85 | 0.0334 |
86 | 86 | 0.368 |
87 | 87 | 0.769 |
88 | 88 | 0.444 |
89 | 89 | 0.0539 |
9 | 9 | 0.136 |
90 | 90 | 0.54 |
91 | 91 | 0.383 |
92 | 92 | 0.0552 |
93 | 93 | 0.718 |
94 | 94 | 0.0377 |
95 | 95 | 0.625 |
96 | 96 | 0.209 |
97 | 97 | 0.66 |
98 | 98 | 0.0969 |
99 | 99 | 0.936 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12583
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000673 human Small Airway Epithelial Cells, nuclear fraction sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002368 (respiratory epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000166 (human small airway epithelial cell sample)
0000406 (nuclear fraction sample)
0000673 (human Small Airway Epithelial Cells, nuclear fraction sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)