FF:10703-109H1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005215 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007842;DRR008714;DRZ000139;DRZ001524;DRZ011489;DRZ012874 | ||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:3119,DOID:1115 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100453,FF:0100400,FF:0101533,FF:0100460,FF:0100729,FF:0103764 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100400,FF:0100453,FF:0101533 | |fonse_cell_line=FF:0100400,FF:0100453,FF:0101533 | ||
|fonse_cell_line_closure=FF:0100400,FF:0100453,FF:0101533 | |fonse_cell_line_closure=FF:0100400,FF:0100453,FF:0101533 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aNCI-H1770.CNhs11834.10703-109H1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aNCI-H1770.CNhs11834.10703-109H1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aNCI-H1770.CNhs11834.10703-109H1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aNCI-H1770.CNhs11834.10703-109H1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aNCI-H1770.CNhs11834.10703-109H1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10703-109H1 | |id=FF:10703-109H1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100729;;FF:0103764 | ||
|is_obsolete= | |||
|library_id=CNhs11834 | |||
|library_id_phase_based=2:CNhs11834 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10703 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10703 | |||
|name=carcinoid cell line:NCI-H1770 | |name=carcinoid cell line:NCI-H1770 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11834,LSID829,release010,COMPLETED | |profile_hcage=CNhs11834,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0.128639412800133,0,-0.160318030086386,0.128639412800133,0.0310379481894205,0.210744612340438,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0744317788658278,0,0,0,0.188194801530867,0,0.129796892946198,0,0,0.243433013282871,0,0,0,0,0,0,0,0,0,0,0,0,-0.119571546299941,0.0547894720944295,0,0,0,0,0,0,0,0.163979780418032,0,0,0,0,0,0,0,0.211407719140329,0,0,0.5157251136444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106486801569478,0.154200040191467,0,0.141613799425044,0,0.128639412800133,0.00242555976961473,-0.0167620455569522,0.266581098318958,0,0,-0.0204163757020726,0.096582553777842,0.113877394607127,0,0,0,-0.0980353512377064,0.192423603918129,0,0,0,0,0,0,0,0,0,0.113877394607127,0,0.128639412800133,0,0,0,0,0,0.170207504396497,0.128639412800133,0,0,0,-0.122932255701294,0,0,0.139740226980412,0,0,0 | |||
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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=41.66644 | |rna_weight_ug=41.66644 | ||
|sample_age=57 | |sample_age=57 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=CRL-5893 | |sample_cell_catalog=CRL-5893 | ||
|sample_cell_line=NCI-H1770 | |sample_cell_line=NCI-H1770 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.20773122968251e-280!GO:0043226;organelle;1.60879128864598e-245!GO:0043229;intracellular organelle;4.55299698715472e-245!GO:0043231;intracellular membrane-bound organelle;2.71510460297744e-243!GO:0043227;membrane-bound organelle;5.32448658161605e-243!GO:0044422;organelle part;1.64698462182196e-178!GO:0044446;intracellular organelle part;3.02825207783683e-177!GO:0005737;cytoplasm;6.21790638786914e-175!GO:0044444;cytoplasmic part;2.91055638681326e-134!GO:0032991;macromolecular complex;2.99960803919697e-116!GO:0005634;nucleus;1.10122116914045e-108!GO:0044237;cellular metabolic process;2.31104927258078e-97!GO:0030529;ribonucleoprotein complex;2.87360544110897e-94!GO:0044238;primary metabolic process;8.74415493057523e-94!GO:0044428;nuclear part;9.63284910648662e-89!GO:0043170;macromolecule metabolic process;1.16043781489084e-84!GO:0003723;RNA binding;2.60129101425971e-82!GO:0043233;organelle lumen;3.48153514434253e-82!GO:0031974;membrane-enclosed lumen;3.48153514434253e-82!GO:0005739;mitochondrion;4.2340892562822e-79!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.42175480190669e-62!GO:0006396;RNA processing;6.4780357359345e-62!GO:0043234;protein complex;6.29598661598384e-60!GO:0043283;biopolymer metabolic process;4.45024982913676e-59!GO:0044429;mitochondrial part;2.02519299096665e-56!GO:0031090;organelle membrane;8.25426375070941e-56!GO:0016043;cellular component organization and biogenesis;4.8647474726157e-55!GO:0010467;gene expression;8.77315072602275e-54!GO:0005840;ribosome;1.44802561191471e-52!GO:0031967;organelle envelope;7.7997859112308e-52!GO:0031975;envelope;1.51318843273597e-51!GO:0031981;nuclear lumen;2.3314805642055e-49!GO:0005515;protein binding;1.09552297592984e-48!GO:0016071;mRNA metabolic process;4.13588072529493e-46!GO:0006412;translation;2.00540062606791e-44!GO:0006259;DNA metabolic process;2.13178491515412e-44!GO:0006996;organelle organization and biogenesis;2.30696359112489e-44!GO:0003735;structural constituent of ribosome;2.55649246040312e-44!GO:0015031;protein transport;3.45907085325588e-44!GO:0008380;RNA splicing;2.97454638111038e-43!GO:0033036;macromolecule localization;3.48177314580111e-43!GO:0003676;nucleic acid binding;5.21324807336225e-41!GO:0006397;mRNA processing;7.72546433731961e-41!GO:0043228;non-membrane-bound organelle;1.42333772919684e-40!GO:0043232;intracellular non-membrane-bound organelle;1.42333772919684e-40!GO:0009058;biosynthetic process;5.20899902003511e-40!GO:0033279;ribosomal subunit;1.62886792964114e-39!GO:0008104;protein localization;4.7954729667898e-39!GO:0045184;establishment of protein localization;5.14695786127238e-39!GO:0046907;intracellular transport;2.80513666838835e-38!GO:0044249;cellular biosynthetic process;8.12898787745354e-38!GO:0005740;mitochondrial envelope;4.37192429872567e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.05030954903502e-36!GO:0031966;mitochondrial membrane;2.54964221688668e-34!GO:0019866;organelle inner membrane;4.78292955212715e-34!GO:0005829;cytosol;5.87192916552582e-34!GO:0009059;macromolecule biosynthetic process;8.6702853551781e-33!GO:0007049;cell cycle;1.30499885096877e-32!GO:0065003;macromolecular complex assembly;1.45109782107976e-32!GO:0005743;mitochondrial inner membrane;1.17375470613022e-31!GO:0019538;protein metabolic process;4.302904374231e-31!GO:0005681;spliceosome;9.63121922721227e-31!GO:0005654;nucleoplasm;6.65102596193146e-30!GO:0000166;nucleotide binding;6.93363445123286e-30!GO:0022607;cellular component assembly;7.13284432748192e-30!GO:0051649;establishment of cellular localization;8.08943166138389e-30!GO:0006974;response to DNA damage stimulus;9.54129359419521e-30!GO:0051641;cellular localization;2.28485272678695e-29!GO:0006886;intracellular protein transport;2.28485272678695e-29!GO:0016070;RNA metabolic process;3.58284963653921e-29!GO:0044260;cellular macromolecule metabolic process;2.63574263838688e-28!GO:0044267;cellular protein metabolic process;8.03485063840927e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.37098937269143e-27!GO:0006281;DNA repair;1.90817999229961e-27!GO:0005694;chromosome;8.72060526553918e-27!GO:0022402;cell cycle process;8.09809579643898e-25!GO:0006119;oxidative phosphorylation;1.5785720734453e-24!GO:0044455;mitochondrial membrane part;1.58352153026298e-24!GO:0044451;nucleoplasm part;2.32950456937679e-24!GO:0044445;cytosolic part;4.93003109785555e-24!GO:0012505;endomembrane system;8.50051112243957e-24!GO:0000278;mitotic cell cycle;1.53280249674803e-23!GO:0031980;mitochondrial lumen;1.80235243541698e-23!GO:0005759;mitochondrial matrix;1.80235243541698e-23!GO:0044427;chromosomal part;2.16390533020595e-23!GO:0016462;pyrophosphatase activity;8.76203151111161e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.22842303698425e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.61638803119509e-22!GO:0017111;nucleoside-triphosphatase activity;4.49753704870807e-22!GO:0006260;DNA replication;5.52634444707495e-22!GO:0015935;small ribosomal subunit;2.99771087349553e-21!GO:0022403;cell cycle phase;3.45948922356629e-21!GO:0022618;protein-RNA complex assembly;4.87518105172668e-20!GO:0005730;nucleolus;5.42253790661575e-20!GO:0032553;ribonucleotide binding;5.43476057051759e-20!GO:0032555;purine ribonucleotide binding;5.43476057051759e-20!GO:0051276;chromosome organization and biogenesis;6.05201948862903e-20!GO:0015934;large ribosomal subunit;1.57587953196699e-19!GO:0000087;M phase of mitotic cell cycle;2.03814016519965e-19!GO:0016874;ligase activity;3.55470560704502e-19!GO:0007067;mitosis;4.04487263859771e-19!GO:0009719;response to endogenous stimulus;9.16070144421953e-19!GO:0017076;purine nucleotide binding;1.01953321606996e-18!GO:0005746;mitochondrial respiratory chain;1.03877179898194e-18!GO:0006457;protein folding;1.20541270973693e-18!GO:0000279;M phase;3.54114950803399e-18!GO:0005524;ATP binding;1.3962830767369e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.84718232923396e-17!GO:0003954;NADH dehydrogenase activity;1.84718232923396e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.84718232923396e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.81526849160407e-17!GO:0008135;translation factor activity, nucleic acid binding;2.90619252849066e-17!GO:0032559;adenyl ribonucleotide binding;3.32235278607732e-17!GO:0006512;ubiquitin cycle;3.32235278607732e-17!GO:0044265;cellular macromolecule catabolic process;3.77532784819956e-17!GO:0015630;microtubule cytoskeleton;1.18552955636034e-16!GO:0005761;mitochondrial ribosome;1.48427572345006e-16!GO:0000313;organellar ribosome;1.48427572345006e-16!GO:0051301;cell division;1.70589474982931e-16!GO:0042254;ribosome biogenesis and assembly;1.85162551280395e-16!GO:0051186;cofactor metabolic process;9.66656427056417e-16!GO:0030554;adenyl nucleotide binding;1.0086253910452e-15!GO:0005635;nuclear envelope;1.33323160474456e-15!GO:0030964;NADH dehydrogenase complex (quinone);2.60930129461497e-15!GO:0045271;respiratory chain complex I;2.60930129461497e-15!GO:0005747;mitochondrial respiratory chain complex I;2.60930129461497e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.70742382727053e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;2.99948598394372e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;3.07647254734729e-15!GO:0000375;RNA splicing, via transesterification reactions;3.07647254734729e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.07647254734729e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.21213057610674e-15!GO:0031965;nuclear membrane;3.43562064395746e-15!GO:0019941;modification-dependent protein catabolic process;4.30432483151648e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.30432483151648e-15!GO:0042775;organelle ATP synthesis coupled electron transport;4.38495082084021e-15!GO:0042773;ATP synthesis coupled electron transport;4.38495082084021e-15!GO:0000502;proteasome complex (sensu Eukaryota);7.28540984439772e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.0189651962449e-15!GO:0044257;cellular protein catabolic process;1.23927503397982e-14!GO:0016887;ATPase activity;1.30359020559605e-14!GO:0006323;DNA packaging;1.32566640504767e-14!GO:0044453;nuclear membrane part;2.46393449565398e-14!GO:0042623;ATPase activity, coupled;2.90993801410009e-14!GO:0005794;Golgi apparatus;2.98956079668713e-14!GO:0009057;macromolecule catabolic process;3.65189736592245e-14!GO:0044248;cellular catabolic process;3.7027394784879e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.46288071866402e-14!GO:0005783;endoplasmic reticulum;6.64095685691501e-14!GO:0051082;unfolded protein binding;1.06213823234446e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.12852551786537e-13!GO:0043285;biopolymer catabolic process;1.82998756680357e-13!GO:0006605;protein targeting;1.9870484673988e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.4253275184185e-13!GO:0048193;Golgi vesicle transport;2.87325927364686e-13!GO:0048770;pigment granule;2.94596945837059e-13!GO:0042470;melanosome;2.94596945837059e-13!GO:0044432;endoplasmic reticulum part;3.02493385776916e-13!GO:0005643;nuclear pore;4.38577688492891e-13!GO:0016192;vesicle-mediated transport;5.77856101699772e-13!GO:0006732;coenzyme metabolic process;7.60307255753335e-13!GO:0006413;translational initiation;9.12399578439079e-13!GO:0006399;tRNA metabolic process;1.31691906015845e-12!GO:0003743;translation initiation factor activity;2.26154378388204e-12!GO:0006446;regulation of translational initiation;3.02543464794225e-12!GO:0008565;protein transporter activity;3.5751557748216e-12!GO:0004386;helicase activity;3.62909440559258e-12!GO:0016604;nuclear body;4.44834982584652e-12!GO:0006364;rRNA processing;1.21881196177805e-11!GO:0006403;RNA localization;1.74033154067365e-11!GO:0000785;chromatin;1.96945825528767e-11!GO:0030163;protein catabolic process;2.09118916192841e-11!GO:0050657;nucleic acid transport;2.16430347113446e-11!GO:0051236;establishment of RNA localization;2.16430347113446e-11!GO:0050658;RNA transport;2.16430347113446e-11!GO:0006333;chromatin assembly or disassembly;2.46852256703267e-11!GO:0065004;protein-DNA complex assembly;2.49263360772213e-11!GO:0016072;rRNA metabolic process;2.66962237802521e-11!GO:0006163;purine nucleotide metabolic process;2.73418820993773e-11!GO:0008134;transcription factor binding;3.35729447648199e-11!GO:0009259;ribonucleotide metabolic process;3.4355191538383e-11!GO:0065002;intracellular protein transport across a membrane;6.0108820617431e-11!GO:0006261;DNA-dependent DNA replication;8.81086717460305e-11!GO:0008026;ATP-dependent helicase activity;1.03087457871321e-10!GO:0000775;chromosome, pericentric region;1.83863150428373e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.28687852404554e-10!GO:0043566;structure-specific DNA binding;2.33387582382376e-10!GO:0003697;single-stranded DNA binding;3.4636966045809e-10!GO:0016607;nuclear speck;3.63119552846721e-10!GO:0006164;purine nucleotide biosynthetic process;3.7374030835502e-10!GO:0046930;pore complex;3.76519758461294e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.77522763018852e-10!GO:0051726;regulation of cell cycle;5.1801593518654e-10!GO:0005789;endoplasmic reticulum membrane;7.11805288914454e-10!GO:0009055;electron carrier activity;7.53239265055132e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.56807631099821e-10!GO:0000074;regulation of progression through cell cycle;9.40092019469846e-10!GO:0009150;purine ribonucleotide metabolic process;9.40092019469846e-10!GO:0043412;biopolymer modification;1.02354769121728e-09!GO:0009260;ribonucleotide biosynthetic process;1.27594486656726e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.29600433181103e-09!GO:0006913;nucleocytoplasmic transport;1.63913573995628e-09!GO:0051028;mRNA transport;1.89751014772145e-09!GO:0005819;spindle;2.43784461387757e-09!GO:0016568;chromatin modification;2.55781763699234e-09!GO:0051169;nuclear transport;3.57688781691666e-09!GO:0007005;mitochondrion organization and biogenesis;3.98606937747328e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.03914279983381e-09!GO:0004812;aminoacyl-tRNA ligase activity;4.03914279983381e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.03914279983381e-09!GO:0030532;small nuclear ribonucleoprotein complex;4.03914279983381e-09!GO:0019829;cation-transporting ATPase activity;4.27304221408242e-09!GO:0005813;centrosome;4.42071879982113e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.51747075966035e-09!GO:0016779;nucleotidyltransferase activity;4.70199735362158e-09!GO:0051188;cofactor biosynthetic process;5.05662610990752e-09!GO:0009141;nucleoside triphosphate metabolic process;5.66493922976986e-09!GO:0009060;aerobic respiration;6.02700856263235e-09!GO:0044431;Golgi apparatus part;6.71973552059951e-09!GO:0043038;amino acid activation;8.15587787309517e-09!GO:0006418;tRNA aminoacylation for protein translation;8.15587787309517e-09!GO:0043039;tRNA aminoacylation;8.15587787309517e-09!GO:0005815;microtubule organizing center;8.18794751768905e-09!GO:0015986;ATP synthesis coupled proton transport;8.88068438770655e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.88068438770655e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.17308329640653e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.17308329640653e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.1831431114176e-08!GO:0048475;coated membrane;1.28506707436546e-08!GO:0030117;membrane coat;1.28506707436546e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.31578314447953e-08!GO:0031988;membrane-bound vesicle;1.3398654210584e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.80664311011133e-08!GO:0031982;vesicle;1.82459558700561e-08!GO:0031410;cytoplasmic vesicle;2.1070078841329e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.29188881978501e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.29188881978501e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.97672754913426e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.7191280839374e-08!GO:0045333;cellular respiration;3.82361827060081e-08!GO:0015078;hydrogen ion transmembrane transporter activity;3.88677344606205e-08!GO:0046034;ATP metabolic process;3.93285590198044e-08!GO:0006464;protein modification process;4.04861865645799e-08!GO:0005874;microtubule;4.44691068166644e-08!GO:0016469;proton-transporting two-sector ATPase complex;5.01567984719417e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.17473758445624e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.17473758445624e-08!GO:0006334;nucleosome assembly;6.6033103842448e-08!GO:0007017;microtubule-based process;8.24853264976078e-08!GO:0016740;transferase activity;8.43735858632742e-08!GO:0000245;spliceosome assembly;1.18889802958419e-07!GO:0031497;chromatin assembly;1.19564439740155e-07!GO:0006099;tricarboxylic acid cycle;1.39449175112544e-07!GO:0046356;acetyl-CoA catabolic process;1.39449175112544e-07!GO:0005657;replication fork;1.55482644042035e-07!GO:0009108;coenzyme biosynthetic process;1.57624198037658e-07!GO:0006754;ATP biosynthetic process;1.75431918895924e-07!GO:0006753;nucleoside phosphate metabolic process;1.75431918895924e-07!GO:0006084;acetyl-CoA metabolic process;1.79950091150945e-07!GO:0017038;protein import;1.8075072642232e-07!GO:0006461;protein complex assembly;2.11011903979705e-07!GO:0045045;secretory pathway;2.95705991488047e-07!GO:0003712;transcription cofactor activity;3.21953455679609e-07!GO:0000139;Golgi membrane;3.36087672872191e-07!GO:0009056;catabolic process;3.46939372563802e-07!GO:0030120;vesicle coat;3.69639525399499e-07!GO:0030662;coated vesicle membrane;3.69639525399499e-07!GO:0045259;proton-transporting ATP synthase complex;3.90081970526327e-07!GO:0043687;post-translational protein modification;4.45799555763548e-07!GO:0043623;cellular protein complex assembly;4.99090829498297e-07!GO:0008639;small protein conjugating enzyme activity;5.70575702283501e-07!GO:0003899;DNA-directed RNA polymerase activity;6.52355294847058e-07!GO:0006752;group transfer coenzyme metabolic process;7.26613806122829e-07!GO:0009117;nucleotide metabolic process;7.51842908981009e-07!GO:0006888;ER to Golgi vesicle-mediated transport;9.03166628312819e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.56158834333781e-07!GO:0008094;DNA-dependent ATPase activity;1.01945122906048e-06!GO:0004842;ubiquitin-protein ligase activity;1.05398211650947e-06!GO:0009109;coenzyme catabolic process;1.08605915328072e-06!GO:0019787;small conjugating protein ligase activity;1.29434013914714e-06!GO:0008654;phospholipid biosynthetic process;1.36778646023127e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.51663717934345e-06!GO:0051329;interphase of mitotic cell cycle;1.8823836864971e-06!GO:0003724;RNA helicase activity;1.90383095035263e-06!GO:0015631;tubulin binding;2.30612853219067e-06!GO:0005667;transcription factor complex;2.37779516623662e-06!GO:0005793;ER-Golgi intermediate compartment;2.69988011718222e-06!GO:0051325;interphase;3.55644608690053e-06!GO:0051187;cofactor catabolic process;3.58308001202147e-06!GO:0000226;microtubule cytoskeleton organization and biogenesis;3.72805971117117e-06!GO:0016881;acid-amino acid ligase activity;3.96126398232537e-06!GO:0000075;cell cycle checkpoint;4.47862765862495e-06!GO:0006302;double-strand break repair;5.2816276457326e-06!GO:0006383;transcription from RNA polymerase III promoter;5.76394436687693e-06!GO:0007051;spindle organization and biogenesis;5.82272629410031e-06!GO:0000314;organellar small ribosomal subunit;5.90897565352864e-06!GO:0005763;mitochondrial small ribosomal subunit;5.90897565352864e-06!GO:0006839;mitochondrial transport;6.52407210031215e-06!GO:0016853;isomerase activity;7.61218599035819e-06!GO:0005762;mitochondrial large ribosomal subunit;8.06099317496879e-06!GO:0000315;organellar large ribosomal subunit;8.06099317496879e-06!GO:0006366;transcription from RNA polymerase II promoter;1.13298457688893e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.14534895851299e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.15755699917347e-05!GO:0005798;Golgi-associated vesicle;1.1653240764956e-05!GO:0006613;cotranslational protein targeting to membrane;1.1889001397998e-05!GO:0003924;GTPase activity;1.9253927237637e-05!GO:0019222;regulation of metabolic process;1.96044215660617e-05!GO:0005768;endosome;2.03002438040366e-05!GO:0003690;double-stranded DNA binding;2.48714428073151e-05!GO:0006350;transcription;3.13180283423408e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.43939127946246e-05!GO:0005525;GTP binding;4.56055522178688e-05!GO:0004298;threonine endopeptidase activity;4.7737803300181e-05!GO:0032446;protein modification by small protein conjugation;4.84597915699727e-05!GO:0051168;nuclear export;5.00891656204766e-05!GO:0016363;nuclear matrix;5.08916220786611e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.24193361537287e-05!GO:0003684;damaged DNA binding;5.26396828288529e-05!GO:0006626;protein targeting to mitochondrion;5.26548888204324e-05!GO:0008033;tRNA processing;5.30526964230319e-05!GO:0016741;transferase activity, transferring one-carbon groups;5.97907507032718e-05!GO:0003729;mRNA binding;6.02603009860919e-05!GO:0008186;RNA-dependent ATPase activity;6.26384452403341e-05!GO:0046474;glycerophospholipid biosynthetic process;6.39151839279013e-05!GO:0048471;perinuclear region of cytoplasm;7.73049680061773e-05!GO:0009165;nucleotide biosynthetic process;8.11053026614985e-05!GO:0016567;protein ubiquitination;8.13255503126242e-05!GO:0015980;energy derivation by oxidation of organic compounds;8.82913852366453e-05!GO:0045454;cell redox homeostasis;8.92315482567019e-05!GO:0016126;sterol biosynthetic process;0.000101195769658743!GO:0016859;cis-trans isomerase activity;0.000108823172290151!GO:0005048;signal sequence binding;0.000109550481006433!GO:0000059;protein import into nucleus, docking;0.000111874721036398!GO:0006414;translational elongation;0.000113881238513!GO:0008168;methyltransferase activity;0.00011514288845051!GO:0051170;nuclear import;0.000118342694836465!GO:0007010;cytoskeleton organization and biogenesis;0.000127822897505699!GO:0000776;kinetochore;0.00013434876441655!GO:0046467;membrane lipid biosynthetic process;0.000134418016296025!GO:0043021;ribonucleoprotein binding;0.000134418016296025!GO:0000151;ubiquitin ligase complex;0.000140530256872142!GO:0003682;chromatin binding;0.000141481397141946!GO:0005788;endoplasmic reticulum lumen;0.000146164828008653!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000150482378293839!GO:0051539;4 iron, 4 sulfur cluster binding;0.000156030917747925!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000156260012713651!GO:0031970;organelle envelope lumen;0.000162627353655375!GO:0044440;endosomal part;0.000165844410874929!GO:0010008;endosome membrane;0.000165844410874929!GO:0008017;microtubule binding;0.00017210971607579!GO:0004004;ATP-dependent RNA helicase activity;0.000177486414299463!GO:0006612;protein targeting to membrane;0.00017938762836144!GO:0030135;coated vesicle;0.000189675540122203!GO:0043681;protein import into mitochondrion;0.000193388411217578!GO:0005758;mitochondrial intermembrane space;0.000198312156656669!GO:0007059;chromosome segregation;0.000208165845308191!GO:0051540;metal cluster binding;0.000211198421949579!GO:0051536;iron-sulfur cluster binding;0.000211198421949579!GO:0030867;rough endoplasmic reticulum membrane;0.000213655118968134!GO:0006793;phosphorus metabolic process;0.000213883874285406!GO:0006796;phosphate metabolic process;0.000213883874285406!GO:0007006;mitochondrial membrane organization and biogenesis;0.000254104799703483!GO:0000228;nuclear chromosome;0.000255913143794783!GO:0031124;mRNA 3'-end processing;0.000270956251231418!GO:0006606;protein import into nucleus;0.000272304176862148!GO:0003746;translation elongation factor activity;0.00027819341083372!GO:0016787;hydrolase activity;0.000309674626642859!GO:0031968;organelle outer membrane;0.000322151104547329!GO:0008250;oligosaccharyl transferase complex;0.000322151104547329!GO:0044452;nucleolar part;0.000324326962850694!GO:0004576;oligosaccharyl transferase activity;0.000337615756165635!GO:0004527;exonuclease activity;0.000338466163649121!GO:0005741;mitochondrial outer membrane;0.000358818013692381!GO:0032561;guanyl ribonucleotide binding;0.000370152723418956!GO:0019001;guanyl nucleotide binding;0.000370152723418956!GO:0030137;COPI-coated vesicle;0.000383799342099028!GO:0019867;outer membrane;0.000395028703504398!GO:0030118;clathrin coat;0.000404847279299429!GO:0003678;DNA helicase activity;0.000409906894580896!GO:0007052;mitotic spindle organization and biogenesis;0.000411547723105397!GO:0046489;phosphoinositide biosynthetic process;0.000422854779676662!GO:0006310;DNA recombination;0.000427004943795137!GO:0032940;secretion by cell;0.000434220895451005!GO:0008610;lipid biosynthetic process;0.000449659343305862!GO:0006891;intra-Golgi vesicle-mediated transport;0.000452619686048474!GO:0031323;regulation of cellular metabolic process;0.00045731840247963!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000467646621298678!GO:0005684;U2-dependent spliceosome;0.000481283904925641!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00049036660322082!GO:0015399;primary active transmembrane transporter activity;0.00049036660322082!GO:0006352;transcription initiation;0.00049564468804002!GO:0045786;negative regulation of progression through cell cycle;0.00049564468804002!GO:0005875;microtubule associated complex;0.000515258210814272!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000526841412416427!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000526841412416427!GO:0006695;cholesterol biosynthetic process;0.000565487791601136!GO:0050794;regulation of cellular process;0.000565487791601136!GO:0007088;regulation of mitosis;0.000568473425802407!GO:0032774;RNA biosynthetic process;0.000574370884658508!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000584215701862358!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000584215701862358!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000584215701862358!GO:0003677;DNA binding;0.000593354264000917!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000606486298643457!GO:0051920;peroxiredoxin activity;0.000614155868560902!GO:0019899;enzyme binding;0.000662605303451377!GO:0031072;heat shock protein binding;0.000667504856180043!GO:0006351;transcription, DNA-dependent;0.000739486673678815!GO:0030880;RNA polymerase complex;0.000739486673678815!GO:0048500;signal recognition particle;0.000780502723067373!GO:0043596;nuclear replication fork;0.000875981279472069!GO:0030663;COPI coated vesicle membrane;0.000934446260172233!GO:0030126;COPI vesicle coat;0.000934446260172233!GO:0010468;regulation of gene expression;0.000936905419796632!GO:0006284;base-excision repair;0.000936905419796632!GO:0005770;late endosome;0.00094518165255042!GO:0005876;spindle microtubule;0.000949347555556348!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000965055879510413!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00100296432313416!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00104460759696683!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00104460759696683!GO:0042393;histone binding;0.00104460759696683!GO:0006144;purine base metabolic process;0.00111178598907294!GO:0008312;7S RNA binding;0.00113403329309179!GO:0006091;generation of precursor metabolites and energy;0.0011362970991982!GO:0015992;proton transport;0.00120643411625648!GO:0006405;RNA export from nucleus;0.00120899938298668!GO:0006378;mRNA polyadenylation;0.00122091547706302!GO:0009112;nucleobase metabolic process;0.00122812293547551!GO:0006818;hydrogen transport;0.00123022401855196!GO:0016310;phosphorylation;0.00130878830091592!GO:0003711;transcription elongation regulator activity;0.00130886428345932!GO:0044450;microtubule organizing center part;0.00133270802394553!GO:0005905;coated pit;0.00135797016485018!GO:0032508;DNA duplex unwinding;0.00141779719915845!GO:0032392;DNA geometric change;0.00141779719915845!GO:0000786;nucleosome;0.00146714894907704!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00157133682271594!GO:0000428;DNA-directed RNA polymerase complex;0.00157133682271594!GO:0003713;transcription coactivator activity;0.0015751071429004!GO:0006270;DNA replication initiation;0.00158422516020576!GO:0051052;regulation of DNA metabolic process;0.0015997520530875!GO:0030133;transport vesicle;0.00171328095155944!GO:0022890;inorganic cation transmembrane transporter activity;0.0017205925553181!GO:0032259;methylation;0.00173369405405912!GO:0003714;transcription corepressor activity;0.00176300833163419!GO:0000049;tRNA binding;0.00190699414838631!GO:0000725;recombinational repair;0.00192581069480082!GO:0000724;double-strand break repair via homologous recombination;0.00192581069480082!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00197595650437419!GO:0045047;protein targeting to ER;0.00197595650437419!GO:0006007;glucose catabolic process;0.00200934710398416!GO:0051789;response to protein stimulus;0.00203565285312461!GO:0006986;response to unfolded protein;0.00203565285312461!GO:0016491;oxidoreductase activity;0.00207177356755817!GO:0031123;RNA 3'-end processing;0.00213878800578717!GO:0006611;protein export from nucleus;0.00218333830009615!GO:0051087;chaperone binding;0.00221910350157544!GO:0043284;biopolymer biosynthetic process;0.00222092327834618!GO:0030658;transport vesicle membrane;0.00222321835811364!GO:0006650;glycerophospholipid metabolic process;0.00224829688863921!GO:0018196;peptidyl-asparagine modification;0.00228928217354085!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00228928217354085!GO:0012501;programmed cell death;0.00231503220919649!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00231586342854899!GO:0006268;DNA unwinding during replication;0.00239131231920026!GO:0009116;nucleoside metabolic process;0.00241108750904945!GO:0005885;Arp2/3 protein complex;0.00241590425688568!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00261071122084651!GO:0030176;integral to endoplasmic reticulum membrane;0.00266734602025076!GO:0000792;heterochromatin;0.0026980686010694!GO:0006915;apoptosis;0.0026980686010694!GO:0044454;nuclear chromosome part;0.00271134379973333!GO:0000910;cytokinesis;0.00274881193291757!GO:0006595;polyamine metabolic process;0.00297204376291693!GO:0051427;hormone receptor binding;0.0030833194162925!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0031134982068396!GO:0005637;nuclear inner membrane;0.00335496414777226!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00342536553450569!GO:0004518;nuclease activity;0.00344525906807977!GO:0006289;nucleotide-excision repair;0.00361944315179676!GO:0044262;cellular carbohydrate metabolic process;0.00372309479008779!GO:0016272;prefoldin complex;0.00384611824904102!GO:0007093;mitotic cell cycle checkpoint;0.00402092966023232!GO:0016251;general RNA polymerase II transcription factor activity;0.00418367744712714!GO:0008287;protein serine/threonine phosphatase complex;0.00418984245489857!GO:0030660;Golgi-associated vesicle membrane;0.00418984245489857!GO:0000922;spindle pole;0.00434394602933075!GO:0032200;telomere organization and biogenesis;0.00438741855849673!GO:0000723;telomere maintenance;0.00438741855849673!GO:0006338;chromatin remodeling;0.00445037638129524!GO:0030119;AP-type membrane coat adaptor complex;0.00463666329885837!GO:0008139;nuclear localization sequence binding;0.00468512730056451!GO:0019318;hexose metabolic process;0.00478701220022992!GO:0048487;beta-tubulin binding;0.00481392100894657!GO:0005791;rough endoplasmic reticulum;0.00489050038530783!GO:0043601;nuclear replisome;0.00490499876699215!GO:0030894;replisome;0.00490499876699215!GO:0005669;transcription factor TFIID complex;0.00517488343903478!GO:0004674;protein serine/threonine kinase activity;0.00523049179696172!GO:0035257;nuclear hormone receptor binding;0.00531019341435068!GO:0006505;GPI anchor metabolic process;0.00544336112795166!GO:0046365;monosaccharide catabolic process;0.00544632806478406!GO:0005996;monosaccharide metabolic process;0.0054815027510473!GO:0008180;signalosome;0.00553564618489933!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00563898694757724!GO:0007018;microtubule-based movement;0.00565621820917933!GO:0045449;regulation of transcription;0.00567283826665797!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00582366486437623!GO:0015002;heme-copper terminal oxidase activity;0.00582366486437623!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00582366486437623!GO:0004129;cytochrome-c oxidase activity;0.00582366486437623!GO:0007004;telomere maintenance via telomerase;0.0059491470364556!GO:0006506;GPI anchor biosynthetic process;0.0059732618129068!GO:0005869;dynactin complex;0.00619707774084259!GO:0030131;clathrin adaptor complex;0.0064380176833106!GO:0033116;ER-Golgi intermediate compartment membrane;0.00646339601988562!GO:0000178;exosome (RNase complex);0.00660427589053014!GO:0000082;G1/S transition of mitotic cell cycle;0.00663769674491352!GO:0005663;DNA replication factor C complex;0.00663958196438203!GO:0008022;protein C-terminus binding;0.00683291187749041!GO:0043492;ATPase activity, coupled to movement of substances;0.00688505350010538!GO:0030384;phosphoinositide metabolic process;0.0071327636442304!GO:0043414;biopolymer methylation;0.00730553425088241!GO:0006916;anti-apoptosis;0.00750451946327282!GO:0006730;one-carbon compound metabolic process;0.00750997327472041!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00750997327472041!GO:0016790;thiolester hydrolase activity;0.00752945956815548!GO:0006402;mRNA catabolic process;0.00755136987040374!GO:0016584;nucleosome positioning;0.00764510694716996!GO:0000287;magnesium ion binding;0.00764510694716996!GO:0022406;membrane docking;0.00766217050922392!GO:0048278;vesicle docking;0.00766217050922392!GO:0006401;RNA catabolic process;0.00793100934816241!GO:0040029;regulation of gene expression, epigenetic;0.00794403174385041!GO:0031577;spindle checkpoint;0.00816638760596572!GO:0007021;tubulin folding;0.00829071120084231!GO:0008601;protein phosphatase type 2A regulator activity;0.00829071120084231!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00837697569620999!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00841336576942205!GO:0006096;glycolysis;0.00845921792322715!GO:0005832;chaperonin-containing T-complex;0.00861786742911094!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0086956848806641!GO:0046112;nucleobase biosynthetic process;0.0086956848806641!GO:0008276;protein methyltransferase activity;0.00885716726989743!GO:0019320;hexose catabolic process;0.00899736541981773!GO:0046164;alcohol catabolic process;0.0091183959865004!GO:0008219;cell death;0.00927734017256715!GO:0016265;death;0.00927734017256715!GO:0006541;glutamine metabolic process;0.00953592893528837!GO:0051246;regulation of protein metabolic process;0.00976470544757837!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0102504477608562!GO:0019783;small conjugating protein-specific protease activity;0.0104865663323909!GO:0043069;negative regulation of programmed cell death;0.0106222332242545!GO:0016564;transcription repressor activity;0.0111428183319429!GO:0006497;protein amino acid lipidation;0.0114603888782503!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0116586821989199!GO:0004523;ribonuclease H activity;0.0116586821989199!GO:0043631;RNA polyadenylation;0.0119215118663249!GO:0008652;amino acid biosynthetic process;0.0120701331830983!GO:0006892;post-Golgi vesicle-mediated transport;0.0122734096971975!GO:0004843;ubiquitin-specific protease activity;0.0126091212686305!GO:0044433;cytoplasmic vesicle part;0.0128173389487475!GO:0031902;late endosome membrane;0.0129268525715722!GO:0006278;RNA-dependent DNA replication;0.01296299476522!GO:0043066;negative regulation of apoptosis;0.0129924003796397!GO:0050789;regulation of biological process;0.0133374624731852!GO:0030125;clathrin vesicle coat;0.0136074026839918!GO:0030665;clathrin coated vesicle membrane;0.0136074026839918!GO:0000096;sulfur amino acid metabolic process;0.0140962992483846!GO:0031252;leading edge;0.0141963799269508!GO:0019843;rRNA binding;0.0142586335654034!GO:0003730;mRNA 3'-UTR binding;0.0142605245314385!GO:0006904;vesicle docking during exocytosis;0.0142729206050103!GO:0009303;rRNA transcription;0.0144231790500995!GO:0004221;ubiquitin thiolesterase activity;0.0144764140912991!GO:0008408;3'-5' exonuclease activity;0.0144764140912991!GO:0031570;DNA integrity checkpoint;0.0145631544076032!GO:0043130;ubiquitin binding;0.0145644032664442!GO:0032182;small conjugating protein binding;0.0145644032664442!GO:0035267;NuA4 histone acetyltransferase complex;0.0146225629409536!GO:0016044;membrane organization and biogenesis;0.0148692283088721!GO:0030132;clathrin coat of coated pit;0.0149365497771466!GO:0012506;vesicle membrane;0.0149858234341857!GO:0000152;nuclear ubiquitin ligase complex;0.015010720324028!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0152254505025368!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0152254505025368!GO:0019887;protein kinase regulator activity;0.0155516091082595!GO:0004003;ATP-dependent DNA helicase activity;0.0158183356350934!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.015933587897146!GO:0006220;pyrimidine nucleotide metabolic process;0.0159571332470707!GO:0046483;heterocycle metabolic process;0.0162765341377231!GO:0050178;phenylpyruvate tautomerase activity;0.0163759583509384!GO:0044438;microbody part;0.0164513605877646!GO:0044439;peroxisomal part;0.0164513605877646!GO:0009451;RNA modification;0.0164516493588727!GO:0022411;cellular component disassembly;0.0165816470196753!GO:0006355;regulation of transcription, DNA-dependent;0.0167641898342929!GO:0043022;ribosome binding;0.0169034033604603!GO:0000339;RNA cap binding;0.0173071952523874!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0173807673148212!GO:0010257;NADH dehydrogenase complex assembly;0.0173807673148212!GO:0033108;mitochondrial respiratory chain complex assembly;0.0173807673148212!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0174602016760392!GO:0008536;Ran GTPase binding;0.0177012767284393!GO:0043624;cellular protein complex disassembly;0.0183623329132478!GO:0009124;nucleoside monophosphate biosynthetic process;0.0184356650362129!GO:0009123;nucleoside monophosphate metabolic process;0.0184356650362129!GO:0004532;exoribonuclease activity;0.018810793470716!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.018810793470716!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0188482700942691!GO:0030659;cytoplasmic vesicle membrane;0.0189568953442028!GO:0000930;gamma-tubulin complex;0.0190014295587448!GO:0006376;mRNA splice site selection;0.0196495873107552!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0196495873107552!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0198022217911734!GO:0045039;protein import into mitochondrial inner membrane;0.0198022217911734!GO:0008097;5S rRNA binding;0.0199069481273784!GO:0022884;macromolecule transmembrane transporter activity;0.0199069481273784!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0199069481273784!GO:0016563;transcription activator activity;0.020064041420474!GO:0000118;histone deacetylase complex;0.0203477633836761!GO:0005769;early endosome;0.0203477633836761!GO:0006275;regulation of DNA replication;0.0209945208182108!GO:0043189;H4/H2A histone acetyltransferase complex;0.021160528205602!GO:0043154;negative regulation of caspase activity;0.0217641146603198!GO:0051287;NAD binding;0.0218003778474139!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0220458399657385!GO:0031903;microbody membrane;0.0223063816441267!GO:0005778;peroxisomal membrane;0.0223063816441267!GO:0000781;chromosome, telomeric region;0.022465209516029!GO:0005652;nuclear lamina;0.0226449558101357!GO:0046128;purine ribonucleoside metabolic process;0.0227245495303204!GO:0042278;purine nucleoside metabolic process;0.0227245495303204!GO:0043433;negative regulation of transcription factor activity;0.0232972981510684!GO:0051252;regulation of RNA metabolic process;0.0233180584435446!GO:0019206;nucleoside kinase activity;0.0237079110298658!GO:0033170;DNA-protein loading ATPase activity;0.0238184709847406!GO:0003689;DNA clamp loader activity;0.0238184709847406!GO:0007050;cell cycle arrest;0.0240421819403555!GO:0000159;protein phosphatase type 2A complex;0.0241835787254797!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0244502251435712!GO:0000086;G2/M transition of mitotic cell cycle;0.0247213692184183!GO:0042769;DNA damage response, detection of DNA damage;0.0248701445974674!GO:0001832;blastocyst growth;0.0251691375721162!GO:0030508;thiol-disulfide exchange intermediate activity;0.0253376335313876!GO:0003887;DNA-directed DNA polymerase activity;0.025338236184935!GO:0032984;macromolecular complex disassembly;0.0257564426112178!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0259484114195873!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0259484114195873!GO:0004448;isocitrate dehydrogenase activity;0.0259484114195873!GO:0003923;GPI-anchor transamidase activity;0.0263080446974047!GO:0016255;attachment of GPI anchor to protein;0.0263080446974047!GO:0042765;GPI-anchor transamidase complex;0.0263080446974047!GO:0000790;nuclear chromatin;0.0267476320660225!GO:0006354;RNA elongation;0.0269119186170308!GO:0006367;transcription initiation from RNA polymerase II promoter;0.027045915375857!GO:0000209;protein polyubiquitination;0.0272421804588178!GO:0008637;apoptotic mitochondrial changes;0.0284064098883633!GO:0042158;lipoprotein biosynthetic process;0.0284452579412986!GO:0003756;protein disulfide isomerase activity;0.0284593668708774!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0284593668708774!GO:0030027;lamellipodium;0.0293250624865695!GO:0042770;DNA damage response, signal transduction;0.0293488188237054!GO:0030496;midbody;0.0294281369092964!GO:0008320;protein transmembrane transporter activity;0.0294715967801506!GO:0006066;alcohol metabolic process;0.0297990204166487!GO:0008213;protein amino acid alkylation;0.0306657009697249!GO:0006479;protein amino acid methylation;0.0306657009697249!GO:0006643;membrane lipid metabolic process;0.0311934404233238!GO:0006301;postreplication repair;0.0319608794766424!GO:0045947;negative regulation of translational initiation;0.0320426763197103!GO:0016585;chromatin remodeling complex;0.0322820958421701!GO:0030911;TPR domain binding;0.0325396431763204!GO:0000726;non-recombinational repair;0.0328452463933265!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0328696069504102!GO:0030262;apoptotic nuclear changes;0.0328834889045248!GO:0032404;mismatch repair complex binding;0.033036800081739!GO:0005784;translocon complex;0.0333311896962352!GO:0006400;tRNA modification;0.0333311896962352!GO:0003702;RNA polymerase II transcription factor activity;0.0336659696295431!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0338812877371046!GO:0043241;protein complex disassembly;0.0339940160966916!GO:0000793;condensed chromosome;0.0341432247343187!GO:0009113;purine base biosynthetic process;0.0348925475037015!GO:0005658;alpha DNA polymerase:primase complex;0.0350066257265417!GO:0030127;COPII vesicle coat;0.0353374984316057!GO:0012507;ER to Golgi transport vesicle membrane;0.0353374984316057!GO:0006406;mRNA export from nucleus;0.0353374984316057!GO:0019207;kinase regulator activity;0.035559757149349!GO:0031371;ubiquitin conjugating enzyme complex;0.0358378029008891!GO:0000097;sulfur amino acid biosynthetic process;0.0358378029008891!GO:0009262;deoxyribonucleotide metabolic process;0.0359023358466231!GO:0030134;ER to Golgi transport vesicle;0.0365269000892467!GO:0008538;proteasome activator activity;0.0366743019356345!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0366743019356345!GO:0055083;monovalent inorganic anion homeostasis;0.0366743019356345!GO:0055064;chloride ion homeostasis;0.0366743019356345!GO:0030644;cellular chloride ion homeostasis;0.0366743019356345!GO:0032039;integrator complex;0.0369863414589005!GO:0004347;glucose-6-phosphate isomerase activity;0.0382503425690023!GO:0051297;centrosome organization and biogenesis;0.0383852413755905!GO:0031023;microtubule organizing center organization and biogenesis;0.0383852413755905!GO:0016835;carbon-oxygen lyase activity;0.0389749640380219!GO:0016311;dephosphorylation;0.0390126572875778!GO:0006006;glucose metabolic process;0.0392130217141566!GO:0009161;ribonucleoside monophosphate metabolic process;0.0393770951179881!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0393770951179881!GO:0004860;protein kinase inhibitor activity;0.0406207197476738!GO:0000070;mitotic sister chromatid segregation;0.0407389819366987!GO:0030521;androgen receptor signaling pathway;0.0421771936491744!GO:0005680;anaphase-promoting complex;0.0422213484211477!GO:0000819;sister chromatid segregation;0.0425099242556733!GO:0050662;coenzyme binding;0.0435638608281962!GO:0007019;microtubule depolymerization;0.0438647537157106!GO:0031301;integral to organelle membrane;0.0443552002735839!GO:0005666;DNA-directed RNA polymerase III complex;0.0446237340932293!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0446774759397154!GO:0015036;disulfide oxidoreductase activity;0.0467305839975186!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0473744950309141!GO:0008409;5'-3' exonuclease activity;0.0478596828808627!GO:0017134;fibroblast growth factor binding;0.0493581157592539!GO:0006298;mismatch repair;0.0497202292506732!GO:0045005;maintenance of fidelity during DNA-dependent DNA replication;0.0497202292506732!GO:0016407;acetyltransferase activity;0.049911698300173 | |||
|sample_id=10703 | |sample_id=10703 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=FOXP1:3.51075042774;NANOG:2.78771890799;PITX1..3:2.73908825505;POU6F1:2.59339228301;POU1F1:2.38212906821;NFY{A,B,C}:2.28673729708;BREu{core}:2.27684351403;NKX2-1,4:2.02967657687;TOPORS:1.922673575;PAX3,7:1.84122859773;ADNP_IRX_SIX_ZHX:1.83973675759;E2F1..5:1.82410449259;AIRE:1.67259244507;NRF1:1.6275558167;PAX8:1.61562500973;HOX{A4,D4}:1.53252275505;LHX3,4:1.50207014183;NKX6-1,2:1.48667983722;RBPJ:1.46859048276;LMO2:1.46198625913;ZNF143:1.4230544757;TFDP1:1.41657541241;PRRX1,2:1.41556210235;PBX1:1.37975643095;HOX{A6,A7,B6,B7}:1.31995675497;DBP:1.27892676322;ZBTB16:1.25530780861;FOXQ1:1.22006856581;IKZF2:1.1563197762;EVI1:1.1558426975;SOX{8,9,10}:1.14147742535;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.12778714631;NKX2-3_NKX2-5:1.11113776786;AHR_ARNT_ARNT2:1.10223543033;PAX4:1.02339255127;GFI1:0.981399841839;CDX1,2,4:0.959372904234;MYOD1:0.944370712003;POU2F1..3:0.944228169015;PAX6:0.931720004447;RFX1:0.868439635102;XCPE1{core}:0.861503936134;FOXA2:0.848271701536;OCT4_SOX2{dimer}:0.835426824861;TEF:0.795984112892;YY1:0.762060664386;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.751303524671;SNAI1..3:0.738705434487;SOX17:0.72656766538;ZFP161:0.726068586475;FOXM1:0.698069326212;TGIF1:0.670863069016;ATF4:0.631785188629;ELK1,4_GABP{A,B1}:0.606229163677;POU5F1:0.576392344732;GFI1B:0.516547557136;SP1:0.513126100252;RFX2..5_RFXANK_RFXAP:0.500403720161;REST:0.499276485725;ALX1:0.478738714994;NKX3-1:0.451068885336;CUX2:0.450781356315;ONECUT1,2:0.449696321539;STAT5{A,B}:0.442507139873;MYB:0.435180289224;HOXA9_MEIS1:0.38728458207;ARID5B:0.376453794333;ZNF423:0.364100500064;bHLH_family:0.356259695952;ATF5_CREB3:0.351436137967;FOXD3:0.348380059881;LEF1_TCF7_TCF7L1,2:0.331272920113;RREB1:0.321188069634;POU3F1..4:0.315783499525;PDX1:0.283231737367;HAND1,2:0.255312864598;ATF2:0.255129605531;ZEB1:0.246953828795;VSX1,2:0.222173515024;HOX{A5,B5}:0.219587107654;FOXP3:0.179889430467;PPARG:0.154073790802;SOX5:0.153254008431;EBF1:0.149049133599;JUN:0.147902018097;FOXL1:0.14533828879;PAX5:0.1178706866;NHLH1,2:0.10865628205;GATA6:0.0944043639844;MEF2{A,B,C,D}:0.0878886071445;HMGA1,2:0.0673050360433;CRX:0.0584535259192;ZIC1..3:0.0517110287012;STAT1,3:0.0305981214036;HIC1:-0.0287333850512;EGR1..3:-0.0529881046816;TLX1..3_NFIC{dimer}:-0.0552639491372;ZBTB6:-0.0634679682947;RORA:-0.0670318606138;TFAP2B:-0.0782416874618;ATF6:-0.0912348729638;CREB1:-0.0990468386208;KLF4:-0.101312241026;FOX{F1,F2,J1}:-0.116028240814;MED-1{core}:-0.124390947383;FOXN1:-0.131126922186;NKX2-2,8:-0.151221234807;MTE{core}:-0.155087535358;NR5A1,2:-0.176177917687;PATZ1:-0.184599974005;NR6A1:-0.184713671735;ZNF384:-0.187145927198;PAX1,9:-0.197901839904;GATA4:-0.222096256972;IKZF1:-0.223327382033;HES1:-0.241952471703;NFE2L1:-0.270368524448;BPTF:-0.273810947175;UFEwm:-0.301061987487;ESRRA:-0.306615187345;TP53:-0.316084105774;HNF1A:-0.335234893661;TAL1_TCF{3,4,12}:-0.374923868638;MYFfamily:-0.400187589593;NR1H4:-0.449866483923;EN1,2:-0.496876803851;AR:-0.500284537631;ZNF238:-0.509560222038;DMAP1_NCOR{1,2}_SMARC:-0.528748305615;NFE2L2:-0.548985725067;FOX{I1,J2}:-0.559809247246;GTF2I:-0.560688468281;FOSL2:-0.608964271749;SREBF1,2:-0.611914312172;MTF1:-0.622527128937;MYBL2:-0.624341087605;NFE2:-0.63728301887;PAX2:-0.644409710125;HSF1,2:-0.676814994695;HNF4A_NR2F1,2:-0.696765410858;RUNX1..3:-0.697789596427;ELF1,2,4:-0.705066824187;BACH2:-0.714774551219;NFIL3:-0.717295411658;NFIX:-0.719973125628;SOX2:-0.721408433812;PRDM1:-0.728807943738;CEBPA,B_DDIT3:-0.728847840357;CDC5L:-0.734992736638;RXRA_VDR{dimer}:-0.741235876962;NFKB1_REL_RELA:-0.764545376547;FOS_FOS{B,L1}_JUN{B,D}:-0.779131304444;XBP1:-0.77943140164;HBP1_HMGB_SSRP1_UBTF:-0.790267981776;TBP:-0.792447686417;NKX3-2:-0.811215453782;GCM1,2:-0.85794670088;SMAD1..7,9:-0.884222997482;NR3C1:-0.901365476219;FOX{D1,D2}:-0.908441811406;HLF:-0.912668882801;HIF1A:-0.938330561171;SPIB:-0.94902078138;SPI1:-0.967445059662;T:-0.996386057246;TFAP2{A,C}:-1.0038713521;MAZ:-1.00761372507;MZF1:-1.01025001479;GZF1:-1.08269175148;ESR1:-1.10616583967;TBX4,5:-1.14715129826;IRF7:-1.22371539531;ETS1,2:-1.26223633271;TFCP2:-1.28762225862;ALX4:-1.29328140454;TEAD1:-1.29429388008;ZNF148:-1.32593870048;NANOG{mouse}:-1.32627406238;FOXO1,3,4:-1.33313172032;NFATC1..3:-1.34335735649;GTF2A1,2:-1.35457601007;STAT2,4,6:-1.38822627082;SPZ1:-1.41008736489;TLX2:-1.42033142771;RXR{A,B,G}:-1.44981538955;MAFB:-1.50054633543;IRF1,2:-1.50712813112;TFAP4:-1.63785296042;EP300:-1.71787553025;HMX1:-1.92372185339;SRF:-1.92793162544;GLI1..3:-1.97055896921 | |top_motifs=FOXP1:3.51075042774;NANOG:2.78771890799;PITX1..3:2.73908825505;POU6F1:2.59339228301;POU1F1:2.38212906821;NFY{A,B,C}:2.28673729708;BREu{core}:2.27684351403;NKX2-1,4:2.02967657687;TOPORS:1.922673575;PAX3,7:1.84122859773;ADNP_IRX_SIX_ZHX:1.83973675759;E2F1..5:1.82410449259;AIRE:1.67259244507;NRF1:1.6275558167;PAX8:1.61562500973;HOX{A4,D4}:1.53252275505;LHX3,4:1.50207014183;NKX6-1,2:1.48667983722;RBPJ:1.46859048276;LMO2:1.46198625913;ZNF143:1.4230544757;TFDP1:1.41657541241;PRRX1,2:1.41556210235;PBX1:1.37975643095;HOX{A6,A7,B6,B7}:1.31995675497;DBP:1.27892676322;ZBTB16:1.25530780861;FOXQ1:1.22006856581;IKZF2:1.1563197762;EVI1:1.1558426975;SOX{8,9,10}:1.14147742535;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.12778714631;NKX2-3_NKX2-5:1.11113776786;AHR_ARNT_ARNT2:1.10223543033;PAX4:1.02339255127;GFI1:0.981399841839;CDX1,2,4:0.959372904234;MYOD1:0.944370712003;POU2F1..3:0.944228169015;PAX6:0.931720004447;RFX1:0.868439635102;XCPE1{core}:0.861503936134;FOXA2:0.848271701536;OCT4_SOX2{dimer}:0.835426824861;TEF:0.795984112892;YY1:0.762060664386;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.751303524671;SNAI1..3:0.738705434487;SOX17:0.72656766538;ZFP161:0.726068586475;FOXM1:0.698069326212;TGIF1:0.670863069016;ATF4:0.631785188629;ELK1,4_GABP{A,B1}:0.606229163677;POU5F1:0.576392344732;GFI1B:0.516547557136;SP1:0.513126100252;RFX2..5_RFXANK_RFXAP:0.500403720161;REST:0.499276485725;ALX1:0.478738714994;NKX3-1:0.451068885336;CUX2:0.450781356315;ONECUT1,2:0.449696321539;STAT5{A,B}:0.442507139873;MYB:0.435180289224;HOXA9_MEIS1:0.38728458207;ARID5B:0.376453794333;ZNF423:0.364100500064;bHLH_family:0.356259695952;ATF5_CREB3:0.351436137967;FOXD3:0.348380059881;LEF1_TCF7_TCF7L1,2:0.331272920113;RREB1:0.321188069634;POU3F1..4:0.315783499525;PDX1:0.283231737367;HAND1,2:0.255312864598;ATF2:0.255129605531;ZEB1:0.246953828795;VSX1,2:0.222173515024;HOX{A5,B5}:0.219587107654;FOXP3:0.179889430467;PPARG:0.154073790802;SOX5:0.153254008431;EBF1:0.149049133599;JUN:0.147902018097;FOXL1:0.14533828879;PAX5:0.1178706866;NHLH1,2:0.10865628205;GATA6:0.0944043639844;MEF2{A,B,C,D}:0.0878886071445;HMGA1,2:0.0673050360433;CRX:0.0584535259192;ZIC1..3:0.0517110287012;STAT1,3:0.0305981214036;HIC1:-0.0287333850512;EGR1..3:-0.0529881046816;TLX1..3_NFIC{dimer}:-0.0552639491372;ZBTB6:-0.0634679682947;RORA:-0.0670318606138;TFAP2B:-0.0782416874618;ATF6:-0.0912348729638;CREB1:-0.0990468386208;KLF4:-0.101312241026;FOX{F1,F2,J1}:-0.116028240814;MED-1{core}:-0.124390947383;FOXN1:-0.131126922186;NKX2-2,8:-0.151221234807;MTE{core}:-0.155087535358;NR5A1,2:-0.176177917687;PATZ1:-0.184599974005;NR6A1:-0.184713671735;ZNF384:-0.187145927198;PAX1,9:-0.197901839904;GATA4:-0.222096256972;IKZF1:-0.223327382033;HES1:-0.241952471703;NFE2L1:-0.270368524448;BPTF:-0.273810947175;UFEwm:-0.301061987487;ESRRA:-0.306615187345;TP53:-0.316084105774;HNF1A:-0.335234893661;TAL1_TCF{3,4,12}:-0.374923868638;MYFfamily:-0.400187589593;NR1H4:-0.449866483923;EN1,2:-0.496876803851;AR:-0.500284537631;ZNF238:-0.509560222038;DMAP1_NCOR{1,2}_SMARC:-0.528748305615;NFE2L2:-0.548985725067;FOX{I1,J2}:-0.559809247246;GTF2I:-0.560688468281;FOSL2:-0.608964271749;SREBF1,2:-0.611914312172;MTF1:-0.622527128937;MYBL2:-0.624341087605;NFE2:-0.63728301887;PAX2:-0.644409710125;HSF1,2:-0.676814994695;HNF4A_NR2F1,2:-0.696765410858;RUNX1..3:-0.697789596427;ELF1,2,4:-0.705066824187;BACH2:-0.714774551219;NFIL3:-0.717295411658;NFIX:-0.719973125628;SOX2:-0.721408433812;PRDM1:-0.728807943738;CEBPA,B_DDIT3:-0.728847840357;CDC5L:-0.734992736638;RXRA_VDR{dimer}:-0.741235876962;NFKB1_REL_RELA:-0.764545376547;FOS_FOS{B,L1}_JUN{B,D}:-0.779131304444;XBP1:-0.77943140164;HBP1_HMGB_SSRP1_UBTF:-0.790267981776;TBP:-0.792447686417;NKX3-2:-0.811215453782;GCM1,2:-0.85794670088;SMAD1..7,9:-0.884222997482;NR3C1:-0.901365476219;FOX{D1,D2}:-0.908441811406;HLF:-0.912668882801;HIF1A:-0.938330561171;SPIB:-0.94902078138;SPI1:-0.967445059662;T:-0.996386057246;TFAP2{A,C}:-1.0038713521;MAZ:-1.00761372507;MZF1:-1.01025001479;GZF1:-1.08269175148;ESR1:-1.10616583967;TBX4,5:-1.14715129826;IRF7:-1.22371539531;ETS1,2:-1.26223633271;TFCP2:-1.28762225862;ALX4:-1.29328140454;TEAD1:-1.29429388008;ZNF148:-1.32593870048;NANOG{mouse}:-1.32627406238;FOXO1,3,4:-1.33313172032;NFATC1..3:-1.34335735649;GTF2A1,2:-1.35457601007;STAT2,4,6:-1.38822627082;SPZ1:-1.41008736489;TLX2:-1.42033142771;RXR{A,B,G}:-1.44981538955;MAFB:-1.50054633543;IRF1,2:-1.50712813112;TFAP4:-1.63785296042;EP300:-1.71787553025;HMX1:-1.92372185339;SRF:-1.92793162544;GLI1..3:-1.97055896921 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10703-109H1;search_select_hide=table117:FF:10703-109H1 | |||
}} | }} | ||
Latest revision as of 14:34, 3 June 2020
| Name: | carcinoid cell line:NCI-H1770 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11834 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11834
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11834
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.902 |
| 10 | 10 | 0.29 |
| 100 | 100 | 0.196 |
| 101 | 101 | 0.823 |
| 102 | 102 | 0.531 |
| 103 | 103 | 0.0445 |
| 104 | 104 | 0.507 |
| 105 | 105 | 0.781 |
| 106 | 106 | 1.97329e-4 |
| 107 | 107 | 0.0166 |
| 108 | 108 | 0.799 |
| 109 | 109 | 0.399 |
| 11 | 11 | 0.657 |
| 110 | 110 | 0.772 |
| 111 | 111 | 0.911 |
| 112 | 112 | 0.106 |
| 113 | 113 | 0.672 |
| 114 | 114 | 0.227 |
| 115 | 115 | 0.98 |
| 116 | 116 | 0.892 |
| 117 | 117 | 0.543 |
| 118 | 118 | 0.845 |
| 119 | 119 | 0.425 |
| 12 | 12 | 0.62 |
| 120 | 120 | 0.135 |
| 121 | 121 | 0.465 |
| 122 | 122 | 0.783 |
| 123 | 123 | 2.41649e-4 |
| 124 | 124 | 0.477 |
| 125 | 125 | 0.883 |
| 126 | 126 | 0.194 |
| 127 | 127 | 0.252 |
| 128 | 128 | 0.0378 |
| 129 | 129 | 0.607 |
| 13 | 13 | 0.726 |
| 130 | 130 | 0.529 |
| 131 | 131 | 0.623 |
| 132 | 132 | 0.805 |
| 133 | 133 | 0.0994 |
| 134 | 134 | 0.907 |
| 135 | 135 | 0.257 |
| 136 | 136 | 0.796 |
| 137 | 137 | 0.167 |
| 138 | 138 | 0.53 |
| 139 | 139 | 0.905 |
| 14 | 14 | 0.478 |
| 140 | 140 | 0.272 |
| 141 | 141 | 0.438 |
| 142 | 142 | 0.933 |
| 143 | 143 | 0.108 |
| 144 | 144 | 0.573 |
| 145 | 145 | 0.776 |
| 146 | 146 | 0.721 |
| 147 | 147 | 0.996 |
| 148 | 148 | 0.0702 |
| 149 | 149 | 0.163 |
| 15 | 15 | 0.438 |
| 150 | 150 | 0.181 |
| 151 | 151 | 0.386 |
| 152 | 152 | 0.00901 |
| 153 | 153 | 0.552 |
| 154 | 154 | 0.503 |
| 155 | 155 | 0.591 |
| 156 | 156 | 0.694 |
| 157 | 157 | 0.306 |
| 158 | 158 | 0.868 |
| 159 | 159 | 0.46 |
| 16 | 16 | 0.135 |
| 160 | 160 | 0.372 |
| 161 | 161 | 0.911 |
| 162 | 162 | 0.434 |
| 163 | 163 | 0.126 |
| 164 | 164 | 0.263 |
| 165 | 165 | 0.402 |
| 166 | 166 | 0.996 |
| 167 | 167 | 0.693 |
| 168 | 168 | 0.032 |
| 169 | 169 | 0.0654 |
| 17 | 17 | 0.191 |
| 18 | 18 | 0.22 |
| 19 | 19 | 0.134 |
| 2 | 2 | 0.163 |
| 20 | 20 | 0.385 |
| 21 | 21 | 0.527 |
| 22 | 22 | 0.0567 |
| 23 | 23 | 0.0101 |
| 24 | 24 | 0.155 |
| 25 | 25 | 0.859 |
| 26 | 26 | 0.518 |
| 27 | 27 | 0.078 |
| 28 | 28 | 0.765 |
| 29 | 29 | 0.486 |
| 3 | 3 | 0.349 |
| 30 | 30 | 0.155 |
| 31 | 31 | 0.289 |
| 32 | 32 | 0.00366 |
| 33 | 33 | 0.44 |
| 34 | 34 | 0.276 |
| 35 | 35 | 0.606 |
| 36 | 36 | 0.249 |
| 37 | 37 | 0.0693 |
| 38 | 38 | 0.77 |
| 39 | 39 | 0.314 |
| 4 | 4 | 0.306 |
| 40 | 40 | 0.143 |
| 41 | 41 | 0.0885 |
| 42 | 42 | 0.805 |
| 43 | 43 | 0.146 |
| 44 | 44 | 0.415 |
| 45 | 45 | 0.246 |
| 46 | 46 | 0.432 |
| 47 | 47 | 0.685 |
| 48 | 48 | 0.898 |
| 49 | 49 | 0.859 |
| 5 | 5 | 0.301 |
| 50 | 50 | 0.46 |
| 51 | 51 | 0.284 |
| 52 | 52 | 0.103 |
| 53 | 53 | 0.434 |
| 54 | 54 | 0.208 |
| 55 | 55 | 0.0753 |
| 56 | 56 | 0.662 |
| 57 | 57 | 0.356 |
| 58 | 58 | 0.194 |
| 59 | 59 | 0.0649 |
| 6 | 6 | 0.643 |
| 60 | 60 | 0.0111 |
| 61 | 61 | 0.485 |
| 62 | 62 | 0.0407 |
| 63 | 63 | 0.686 |
| 64 | 64 | 0.537 |
| 65 | 65 | 0.3 |
| 66 | 66 | 0.0735 |
| 67 | 67 | 0.588 |
| 68 | 68 | 0.905 |
| 69 | 69 | 0.889 |
| 7 | 7 | 0.536 |
| 70 | 70 | 0.154 |
| 71 | 71 | 0.167 |
| 72 | 72 | 0.0914 |
| 73 | 73 | 0.0141 |
| 74 | 74 | 0.455 |
| 75 | 75 | 0.236 |
| 76 | 76 | 0.963 |
| 77 | 77 | 0.2 |
| 78 | 78 | 0.572 |
| 79 | 79 | 0.15 |
| 8 | 8 | 0.436 |
| 80 | 80 | 0.0602 |
| 81 | 81 | 0.516 |
| 82 | 82 | 0.528 |
| 83 | 83 | 0.239 |
| 84 | 84 | 0.481 |
| 85 | 85 | 0.00843 |
| 86 | 86 | 0.0945 |
| 87 | 87 | 0.292 |
| 88 | 88 | 0.765 |
| 89 | 89 | 0.0249 |
| 9 | 9 | 0.0279 |
| 90 | 90 | 0.981 |
| 91 | 91 | 0.354 |
| 92 | 92 | 0.145 |
| 93 | 93 | 0.396 |
| 94 | 94 | 0.358 |
| 95 | 95 | 0.35 |
| 96 | 96 | 0.829 |
| 97 | 97 | 0.851 |
| 98 | 98 | 0.713 |
| 99 | 99 | 0.864 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11834
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100729 carcinoid cell sample
FF:0103764 NCI cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3119 (gastrointestinal system cancer)
1115 (sarcoma)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0101533 (gastrointestinal cancer cell sample)
0100460 (fibrosarcoma cell line sample)
0100729 (carcinoid cell sample)
0103764 (NCI cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
