FF:12837-137B2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005700 | |||
|accession_numbers=CAGE;DRX008596;DRR009468;DRZ000893;DRZ002278;DRZ012243;DRZ013628 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000150,CL:0000255,CL:0002077,CL:0000148 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000210,FF:0000101,FF:0000001,FF:0000343,FF:0000350,FF:0000730 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure=FF:0000343,FF:0000730,FF:12837-137B2 | |fonse_treatment_closure=FF:0000343,FF:0000730,FF:12837-137B2 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor3%2520%2528MC%252b3%2529.CNhs13406.12837-137B2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor3%2520%2528MC%252b3%2529.CNhs13406.12837-137B2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor3%2520%2528MC%252b3%2529.CNhs13406.12837-137B2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor3%2520%2528MC%252b3%2529.CNhs13406.12837-137B2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor3%2520%2528MC%252b3%2529.CNhs13406.12837-137B2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12837-137B2 | |id=FF:12837-137B2 | ||
|is_a=CL:0000150;;EFO:0002091;;FF: | |is_a=CL:0000150;;EFO:0002091;;FF:0000730 | ||
|is_obsolete= | |||
|library_id=CNhs13406 | |||
|library_id_phase_based=2:CNhs13406 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12837 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12837 | |||
|name=Melanocyte, donor3 (MC+3) | |name=Melanocyte, donor3 (MC+3) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13406,LSID1023,release014,COMPLETED | |profile_hcage=CNhs13406,LSID1023,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0360385985447706,0,0.053721992935289,-0.227812385939953,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.0237742405048837,0,0,0,0,0,0,0,0,0,0,0.109182349273979,0,-0.135196208734682,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0545911746369895,0,0,0,0,0,0,0,0,0,0.0176651206960272,-0.022144236993713,0,0,0.0545911746369895,0,-0.0980353512377064,-0.083886026163906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.0130009234186778,-0.25456999151435,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.196356628631157,-0.0980353512377064,0,0,0.109182349273979,0.109182349273979,0,0,0,0,0,0,0,0.0217451068447681,0,-0.0403230079431203,-0.143515142523472,0,0,0.0614607796713701,0,0.109182349273979,0,0,0.109182349273979,0,0,0,0,0.068236761678592,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,0.440634183752448,0,0.288694032616102,-0.0683442610773682,0,0,0,0,0.0880269654055013,0,-0.0116971345197621,0.0264621809505612,0.631478087696343,-0.424867553954809,-0.055712496781182,0,0,0,0.247316161686936,0,0,0,0.381377119098288,0.289881903080347,0,0,-0.0599604564228317,0,0.104941858082598,0.16074637135347,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.150246287677046,0,0,0,0,0.0298384634339733,0,0,-0.264103806682588,-0.094626370896328,-0.0262266998935241,-0.0287817856568644,0,-0.302389727009913,0.431019184202437,-0.177356903024043,-0.0154541281926153,0.0489547792600181,0.396410257911379,0,0.43821598486047,0.318176368380513,-0.00584364636756945,-0.0615430523021341,-0.0588903141647213,-0.277014499271744,-0.138207508002276,0,0,0.0316734227946754,-0.496219805107097,0,0,0.450267959303711,-0.0814634470511195,0.304487814601639,0.124628729591807,0.0284627612045017,-0.199962020655376,-0.0395325284566706,0.310390703481326,0.017891199150641,-0.0174431250970207,0,0,0.0552897398363259,-0.0102749851820715,-0.112361920867239,-0.138591288822664,0.0351315344519987,-0.0985263174601327,0.872038412703117,0.327187563240591,0.163002606020644,-0.113633125948519,0,0,-0.0620288654870982,0,0,0,0,0,0.112591584975192,0.0468998344310597,-0.123673212281566,0,0,0,-0.199107766037008,0,-0.144838317065682,-0.00581413297964881,-0.101717523730136,0.0384503205325671,0,0.166518789582237,0.0494445457027418,0.00568566450489549,-0.153470823261405,0.327004317539023,0.164941461214204,0.0998777478630324,0.0176651206960272,-0.142544256757148,0.060384592051724,-0.0881268324752877,0,0.146573001887622,-0.410574149491192,-0.0238566091524133,-0.021714658035025,0,0.247958685378389,0,0.0359188628001352,0,0.0459380568643539,0.0125309359075826,0.387855497202828,-0.0887481566374253,0,0.185528074313946,-0.788130937773974,0,-0.00333983100115165,0.0144411277867849,0,0.118556898795693,0.164923214031502,0.555913211524012,0.0936508487015498,0,0.135824029141568,0,0,0.110307463742123,-0.235476037764389,0,-0.00901530744906465,0.00822634402803202,0.119025837155285,0.0803855551962226,0.72324187835058,0,0.538744685187739,0,0,0.319976123713194,0,-0.28869919882983,-0.144143992212777,-0.0348584519666457,-0.0540316348172665,0,0,0.018828862665981,0.109182349273979,0.299347838963195,0,0,0.656724467698367,-0.099458110249864,0,0,0,-0.097087376242186,0,0,0,0,0.0281120167978057,0,0,0.131122821016959,-0.158476701585291,0,0.125751615903192,0,0,0,0,0,-0.055689263579654,0,0,0.218837123367965,-0.0274899236823982,0.145906566453912,0,0,0,0,0.430672205479604,-0.0940542128207452,0.109182349273979,0.137061275632701,0,0,0,0,0.0230413594847672,0,0,0,0,0.273353668075139,0.455121780414941,0,0,0,-0.167772052327812,0,0,0,0,-0.0801014179281918,0,0,0.360179676808991,0,0.00635091700844859,0.303869264804007,0.0250685168192327,-0.350727659320615,-0.680376355161382,0.231053417577247,0,0,-0.261347131789888,0,0,0.105887508854444,0.178502870121836,0,-0.00666603810898645,0,0,0,0,0,0,-0.0179578837685989,0,0,0,0,0,0,0,0,0,0,0,0.0890844537672617,0.176699925471822,0.0980693140040527,0,0,0,0,0,0,0.0304851515580864,0.0168159825568305,0,0,0,0,0,0,0,0,0.423987455326693,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.455624771879905,0,0,0.053721992935289,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.039115495086022,0,0,0,0,0,0,0,0.202401586149924,0,0,0,0,1.74275363326388,0,0,0,0.00438596448482211,0,0.0360385985447706,0,0,0.516748365384314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0154468535420649,0,-0.039898853001143,0,0,0,-0.0981663615678755,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00677675284792555,0,0,0,0,0.109182349273979,0,0,-0.0979578962680575,0,0,0.0171495394734524,0,0,0,0,0.0910876529966145,0,-0.189798526341131,0.207344296505757,-0.00424706275804795,0,0,0,0.0437927418331234,0,0,0.0198985198297786,0,0.318673756931947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0545911746369895,0,0,0,0,0,0,0.0205798113615728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0291638810053401,0,0,0,0.0558377524732889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.209072238319238,0,0,0,0,0,0,0,0,0.109182349273979,0,0,0,0,0.148134553392102,0,0.0248057170439514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.441321693241734,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0545911746369895,0,0,-0.253610608288505,0,0,-0.121671850091798,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0155482734631209,-0.25456999151435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=137 | |rna_box=137 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 55: | Line 77: | ||
|rna_sample_type= | |rna_sample_type= | ||
|rna_tube_id=137B2 | |rna_tube_id=137B2 | ||
|rna_weight_ug=7 | |rna_weight_ug=7 | ||
|sample_age= | |sample_age= | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition=Human ES cell differentiation to melanocyte | |sample_experimental_condition=Human ES cell differentiation to melanocyte | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.81904649386394e-251!GO:0043231;intracellular membrane-bound organelle;1.41977187324846e-206!GO:0043227;membrane-bound organelle;2.44992857550996e-206!GO:0005737;cytoplasm;2.92439437524065e-206!GO:0043226;organelle;3.74658539373296e-203!GO:0043229;intracellular organelle;1.04197200338345e-202!GO:0044444;cytoplasmic part;2.4406181202196e-156!GO:0044422;organelle part;3.95567308687135e-144!GO:0044446;intracellular organelle part;8.92322341182302e-143!GO:0044237;cellular metabolic process;9.5649081007212e-94!GO:0032991;macromolecular complex;1.4166290404483e-92!GO:0044238;primary metabolic process;5.19454045268602e-91!GO:0043170;macromolecule metabolic process;2.51905085330086e-79!GO:0030529;ribonucleoprotein complex;4.44993326118885e-77!GO:0005739;mitochondrion;4.04153202743898e-74!GO:0043233;organelle lumen;2.43763952338856e-70!GO:0031974;membrane-enclosed lumen;2.43763952338856e-70!GO:0005634;nucleus;3.28959810213458e-69!GO:0003723;RNA binding;2.04993195868981e-66!GO:0044428;nuclear part;5.57263946584005e-65!GO:0031090;organelle membrane;5.71148007203598e-62!GO:0005515;protein binding;2.66840977713909e-56!GO:0033036;macromolecule localization;1.85079431040273e-50!GO:0015031;protein transport;3.26947802198795e-50!GO:0044429;mitochondrial part;8.08547540061125e-50!GO:0019538;protein metabolic process;3.48023537820317e-48!GO:0043234;protein complex;4.50899478412401e-48!GO:0008104;protein localization;3.6826969517633e-47!GO:0005840;ribosome;4.0833949241398e-47!GO:0006412;translation;3.66861122561456e-46!GO:0045184;establishment of protein localization;5.28851147349552e-46!GO:0043283;biopolymer metabolic process;2.97800412029125e-45!GO:0009058;biosynthetic process;2.97800412029125e-45!GO:0044260;cellular macromolecule metabolic process;9.04502131974547e-45!GO:0006396;RNA processing;4.08267788667258e-44!GO:0044267;cellular protein metabolic process;7.37509227918992e-44!GO:0031967;organelle envelope;4.78960387504638e-43!GO:0031975;envelope;1.19344262949373e-42!GO:0016043;cellular component organization and biogenesis;1.80954168683847e-41!GO:0003735;structural constituent of ribosome;3.3551604129428e-41!GO:0031981;nuclear lumen;2.20219222718146e-40!GO:0009059;macromolecule biosynthetic process;5.65367522955402e-39!GO:0005829;cytosol;9.11341848439127e-39!GO:0044249;cellular biosynthetic process;3.41085424704413e-38!GO:0010467;gene expression;9.99897549471895e-37!GO:0048770;pigment granule;1.02533223157522e-36!GO:0042470;melanosome;1.02533223157522e-36!GO:0033279;ribosomal subunit;1.09570563108722e-36!GO:0046907;intracellular transport;3.91473883990765e-35!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.37142326931485e-34!GO:0016071;mRNA metabolic process;5.6730163616932e-34!GO:0005740;mitochondrial envelope;1.28138277417463e-32!GO:0006886;intracellular protein transport;2.39386276393731e-31!GO:0008380;RNA splicing;3.11097013490145e-31!GO:0006996;organelle organization and biogenesis;4.64642867433344e-31!GO:0031966;mitochondrial membrane;1.92944357698314e-30!GO:0019866;organelle inner membrane;2.69622048934077e-30!GO:0065003;macromolecular complex assembly;6.95758863126845e-30!GO:0006397;mRNA processing;3.51540110951057e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.5164193797159e-29!GO:0005743;mitochondrial inner membrane;2.09839614726226e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.48603936802988e-27!GO:0012505;endomembrane system;1.95428936930125e-26!GO:0022607;cellular component assembly;9.80036331091675e-26!GO:0043228;non-membrane-bound organelle;2.02317648953137e-25!GO:0043232;intracellular non-membrane-bound organelle;2.02317648953137e-25!GO:0016462;pyrophosphatase activity;1.2024304071084e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.34830739100621e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;1.58330233648827e-24!GO:0000166;nucleotide binding;1.76801512943779e-24!GO:0044445;cytosolic part;2.80911612043808e-24!GO:0006119;oxidative phosphorylation;5.89909828004237e-24!GO:0005654;nucleoplasm;6.24664437818257e-24!GO:0006259;DNA metabolic process;1.59210669949169e-23!GO:0017111;nucleoside-triphosphatase activity;2.38827707414515e-23!GO:0051649;establishment of cellular localization;5.90652454142894e-23!GO:0051641;cellular localization;6.09770635977008e-23!GO:0003676;nucleic acid binding;1.33711952477459e-22!GO:0005681;spliceosome;6.73238196073934e-22!GO:0005783;endoplasmic reticulum;1.21670993368146e-21!GO:0031980;mitochondrial lumen;2.16378610066028e-21!GO:0005759;mitochondrial matrix;2.16378610066028e-21!GO:0016874;ligase activity;5.21737758271892e-21!GO:0006512;ubiquitin cycle;1.6340649378517e-20!GO:0044455;mitochondrial membrane part;2.49752851667115e-20!GO:0044451;nucleoplasm part;9.90667785781828e-20!GO:0015935;small ribosomal subunit;4.04877260277302e-19!GO:0005794;Golgi apparatus;8.31660072927095e-19!GO:0015934;large ribosomal subunit;1.31952344243829e-18!GO:0032553;ribonucleotide binding;1.54880101252245e-18!GO:0032555;purine ribonucleotide binding;1.54880101252245e-18!GO:0006457;protein folding;2.7338695445878e-18!GO:0022618;protein-RNA complex assembly;3.22106345565224e-18!GO:0051186;cofactor metabolic process;6.22815105165352e-18!GO:0017076;purine nucleotide binding;1.19152196487226e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;3.35753253341109e-17!GO:0005730;nucleolus;3.50143387807582e-17!GO:0005746;mitochondrial respiratory chain;3.56656695098185e-17!GO:0019941;modification-dependent protein catabolic process;6.4094986162441e-17!GO:0043632;modification-dependent macromolecule catabolic process;6.4094986162441e-17!GO:0044257;cellular protein catabolic process;8.97498184292542e-17!GO:0044265;cellular macromolecule catabolic process;1.08199389022609e-16!GO:0043285;biopolymer catabolic process;1.15962628710225e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.58329630045971e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.05526917309411e-16!GO:0008134;transcription factor binding;2.19834282810302e-16!GO:0044432;endoplasmic reticulum part;3.08435786250928e-16!GO:0030163;protein catabolic process;7.84054461970443e-16!GO:0016070;RNA metabolic process;8.08596523543012e-16!GO:0043412;biopolymer modification;1.02541846645206e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.25849886879034e-15!GO:0003954;NADH dehydrogenase activity;1.25849886879034e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.25849886879034e-15!GO:0007049;cell cycle;1.46707506538315e-15!GO:0009057;macromolecule catabolic process;1.74624947143107e-15!GO:0044248;cellular catabolic process;2.28861093465935e-15!GO:0006605;protein targeting;4.96163677361307e-15!GO:0005524;ATP binding;5.70339901665133e-15!GO:0032559;adenyl ribonucleotide binding;9.58468500701198e-15!GO:0008135;translation factor activity, nucleic acid binding;1.09974091321667e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.19306036276657e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.20648051180779e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.74798703759909e-14!GO:0006464;protein modification process;6.75729030747697e-14!GO:0006974;response to DNA damage stimulus;9.24247981008675e-14!GO:0030554;adenyl nucleotide binding;9.86947652569337e-14!GO:0042775;organelle ATP synthesis coupled electron transport;9.86947652569337e-14!GO:0042773;ATP synthesis coupled electron transport;9.86947652569337e-14!GO:0006732;coenzyme metabolic process;1.03016376357002e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.05644514510798e-13!GO:0045271;respiratory chain complex I;1.05644514510798e-13!GO:0005747;mitochondrial respiratory chain complex I;1.05644514510798e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.83672835482911e-13!GO:0016887;ATPase activity;2.98234050999776e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.18825708044428e-13!GO:0005761;mitochondrial ribosome;3.31597169878712e-13!GO:0000313;organellar ribosome;3.31597169878712e-13!GO:0042623;ATPase activity, coupled;4.25152715986238e-13!GO:0051082;unfolded protein binding;5.21074852263145e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.22955713826091e-12!GO:0005789;endoplasmic reticulum membrane;2.11605061587908e-12!GO:0016192;vesicle-mediated transport;2.81749652261088e-12!GO:0006413;translational initiation;3.02942110640843e-12!GO:0048193;Golgi vesicle transport;3.3238273356974e-12!GO:0008639;small protein conjugating enzyme activity;9.67689033764674e-12!GO:0003743;translation initiation factor activity;1.17141739498228e-11!GO:0008565;protein transporter activity;1.41631026911667e-11!GO:0042254;ribosome biogenesis and assembly;1.55769551132695e-11!GO:0022402;cell cycle process;1.73879049330485e-11!GO:0005635;nuclear envelope;1.82917558597921e-11!GO:0005768;endosome;2.02250832649423e-11!GO:0004842;ubiquitin-protein ligase activity;2.42079623859851e-11!GO:0019787;small conjugating protein ligase activity;2.45898108275904e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.61005252832423e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;2.73728890432647e-11!GO:0000375;RNA splicing, via transesterification reactions;2.73728890432647e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.73728890432647e-11!GO:0031965;nuclear membrane;2.73728890432647e-11!GO:0031988;membrane-bound vesicle;2.93072001020841e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.13938693637878e-11!GO:0006281;DNA repair;3.16958126654781e-11!GO:0006163;purine nucleotide metabolic process;3.34810447155298e-11!GO:0016023;cytoplasmic membrane-bound vesicle;3.69722730930101e-11!GO:0043687;post-translational protein modification;4.14009464751135e-11!GO:0006446;regulation of translational initiation;4.36340485644171e-11!GO:0005773;vacuole;6.2346165062406e-11!GO:0051276;chromosome organization and biogenesis;7.03176419988649e-11!GO:0009259;ribonucleotide metabolic process;7.07154561250571e-11!GO:0031982;vesicle;8.00835361204156e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;8.96267591085366e-11!GO:0009150;purine ribonucleotide metabolic process;1.06202350106697e-10!GO:0031410;cytoplasmic vesicle;1.14239001080744e-10!GO:0004386;helicase activity;1.96712647937818e-10!GO:0006164;purine nucleotide biosynthetic process;2.73662225802326e-10!GO:0003712;transcription cofactor activity;3.15686483245976e-10!GO:0009199;ribonucleoside triphosphate metabolic process;3.18418218976735e-10!GO:0006323;DNA packaging;3.19621641817757e-10!GO:0044453;nuclear membrane part;3.25116712710801e-10!GO:0016881;acid-amino acid ligase activity;3.27158995125849e-10!GO:0009056;catabolic process;4.46405058621544e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.78151632960698e-10!GO:0009144;purine nucleoside triphosphate metabolic process;4.78151632960698e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.93467803797543e-10!GO:0006399;tRNA metabolic process;5.12513635096123e-10!GO:0009141;nucleoside triphosphate metabolic process;5.22408792359761e-10!GO:0016604;nuclear body;5.88786554479314e-10!GO:0051188;cofactor biosynthetic process;6.59656542087823e-10!GO:0009152;purine ribonucleotide biosynthetic process;8.6430077715756e-10!GO:0009260;ribonucleotide biosynthetic process;1.4265717156422e-09!GO:0015986;ATP synthesis coupled proton transport;1.72355901036606e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.72355901036606e-09!GO:0000278;mitotic cell cycle;2.38867132749851e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.51893525427338e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.51893525427338e-09!GO:0005694;chromosome;2.66163498184739e-09!GO:0000323;lytic vacuole;2.73583465668249e-09!GO:0005764;lysosome;2.73583465668249e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.73939866391569e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.73939866391569e-09!GO:0046034;ATP metabolic process;3.99201705213983e-09!GO:0016787;hydrolase activity;4.36291677519194e-09!GO:0016469;proton-transporting two-sector ATPase complex;7.31694875862205e-09!GO:0044431;Golgi apparatus part;8.21650643593386e-09!GO:0008026;ATP-dependent helicase activity;8.74481575761312e-09!GO:0005770;late endosome;8.74899930280443e-09!GO:0051726;regulation of cell cycle;9.12196832673916e-09!GO:0006913;nucleocytoplasmic transport;9.6746873951013e-09!GO:0019829;cation-transporting ATPase activity;1.02476005525798e-08!GO:0009719;response to endogenous stimulus;1.04499145705275e-08!GO:0016740;transferase activity;1.18798234832985e-08!GO:0009055;electron carrier activity;1.28611148811928e-08!GO:0051169;nuclear transport;1.56358945633463e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.87969152037554e-08!GO:0003924;GTPase activity;2.01485686494938e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.11662407927473e-08!GO:0009060;aerobic respiration;2.1909290803446e-08!GO:0006461;protein complex assembly;2.21655417370505e-08!GO:0000074;regulation of progression through cell cycle;2.23281856208796e-08!GO:0016607;nuclear speck;2.3076070378458e-08!GO:0006754;ATP biosynthetic process;2.64163259605719e-08!GO:0006753;nucleoside phosphate metabolic process;2.64163259605719e-08!GO:0045333;cellular respiration;2.83251725231646e-08!GO:0044427;chromosomal part;2.98970314059218e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.76617581364087e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.76617581364087e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.76617581364087e-08!GO:0048475;coated membrane;4.8706685435637e-08!GO:0030117;membrane coat;4.8706685435637e-08!GO:0005643;nuclear pore;4.93982726458398e-08!GO:0043038;amino acid activation;5.5982695548291e-08!GO:0006418;tRNA aminoacylation for protein translation;5.5982695548291e-08!GO:0043039;tRNA aminoacylation;5.5982695548291e-08!GO:0006333;chromatin assembly or disassembly;6.27436769192155e-08!GO:0065004;protein-DNA complex assembly;7.29547364243855e-08!GO:0005793;ER-Golgi intermediate compartment;8.02082171653833e-08!GO:0007005;mitochondrion organization and biogenesis;1.02112372183028e-07!GO:0032446;protein modification by small protein conjugation;1.21082676816194e-07!GO:0009108;coenzyme biosynthetic process;1.38109429672015e-07!GO:0016567;protein ubiquitination;1.71304305461225e-07!GO:0015630;microtubule cytoskeleton;1.72613307915761e-07!GO:0030120;vesicle coat;1.80974117300875e-07!GO:0030662;coated vesicle membrane;1.80974117300875e-07!GO:0006364;rRNA processing;1.88273452572512e-07!GO:0065002;intracellular protein transport across a membrane;2.09262668966566e-07!GO:0009117;nucleotide metabolic process;2.14476755778159e-07!GO:0006260;DNA replication;2.25937909857139e-07!GO:0006752;group transfer coenzyme metabolic process;2.96627937963398e-07!GO:0016568;chromatin modification;3.07764603988883e-07!GO:0008654;phospholipid biosynthetic process;3.13075011103615e-07!GO:0016072;rRNA metabolic process;3.36490134011744e-07!GO:0044440;endosomal part;3.38651360633888e-07!GO:0010008;endosome membrane;3.38651360633888e-07!GO:0017038;protein import;4.28583382387828e-07!GO:0006099;tricarboxylic acid cycle;4.30373044682657e-07!GO:0046356;acetyl-CoA catabolic process;4.30373044682657e-07!GO:0006366;transcription from RNA polymerase II promoter;4.73191965273513e-07!GO:0050657;nucleic acid transport;4.89218915795978e-07!GO:0051236;establishment of RNA localization;4.89218915795978e-07!GO:0050658;RNA transport;4.89218915795978e-07!GO:0006403;RNA localization;5.29737439843796e-07!GO:0000785;chromatin;5.6942817922321e-07!GO:0003697;single-stranded DNA binding;6.15092479554652e-07!GO:0005798;Golgi-associated vesicle;6.70929191926703e-07!GO:0006084;acetyl-CoA metabolic process;7.11481818712464e-07!GO:0030659;cytoplasmic vesicle membrane;8.23841665250352e-07!GO:0051187;cofactor catabolic process;8.41018713924023e-07!GO:0051301;cell division;9.09688444953447e-07!GO:0046930;pore complex;9.26036806009098e-07!GO:0000139;Golgi membrane;1.05257230907655e-06!GO:0009109;coenzyme catabolic process;1.05257230907655e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.1776373370462e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.19089900526718e-06!GO:0016491;oxidoreductase activity;1.19089900526718e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.29646198247283e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.30465981525069e-06!GO:0043566;structure-specific DNA binding;1.4410074601526e-06!GO:0051246;regulation of protein metabolic process;1.71903032064983e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.89746389665741e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.98757560083266e-06!GO:0022403;cell cycle phase;2.38334682313089e-06!GO:0045259;proton-transporting ATP synthase complex;2.40451808958347e-06!GO:0000087;M phase of mitotic cell cycle;2.55219006798915e-06!GO:0016853;isomerase activity;2.5625568134606e-06!GO:0043623;cellular protein complex assembly;3.01164482832243e-06!GO:0000151;ubiquitin ligase complex;3.11327901345887e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.17191993596702e-06!GO:0005525;GTP binding;3.54656859483868e-06!GO:0007067;mitosis;3.54656859483868e-06!GO:0044433;cytoplasmic vesicle part;3.73949004111129e-06!GO:0042440;pigment metabolic process;4.68936489603407e-06!GO:0004298;threonine endopeptidase activity;5.42995209620848e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.66431112592945e-06!GO:0015399;primary active transmembrane transporter activity;5.66431112592945e-06!GO:0006793;phosphorus metabolic process;5.66431112592945e-06!GO:0006796;phosphate metabolic process;5.66431112592945e-06!GO:0000245;spliceosome assembly;6.14401188495761e-06!GO:0046148;pigment biosynthetic process;7.18195518606427e-06!GO:0016779;nucleotidyltransferase activity;7.67948766732287e-06!GO:0046467;membrane lipid biosynthetic process;7.88365073279996e-06!GO:0048066;pigmentation during development;8.35589910023805e-06!GO:0012506;vesicle membrane;8.54204776374778e-06!GO:0012501;programmed cell death;8.82201312755408e-06!GO:0005667;transcription factor complex;9.10650755370659e-06!GO:0006334;nucleosome assembly;9.27022892707375e-06!GO:0006915;apoptosis;1.03322732646895e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.03425159015476e-05!GO:0003713;transcription coactivator activity;1.09608694781546e-05!GO:0031497;chromatin assembly;1.24112010601223e-05!GO:0051028;mRNA transport;1.39999102013533e-05!GO:0051427;hormone receptor binding;1.64936068576219e-05!GO:0050794;regulation of cellular process;1.77921193707593e-05!GO:0045786;negative regulation of progression through cell cycle;1.90730060590578e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.08356203825129e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.10376160428386e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.11645494780839e-05!GO:0031252;leading edge;2.14906760009245e-05!GO:0006613;cotranslational protein targeting to membrane;2.64340365996566e-05!GO:0005788;endoplasmic reticulum lumen;2.81335007131002e-05!GO:0008610;lipid biosynthetic process;3.01073797233551e-05!GO:0005813;centrosome;3.2412761416127e-05!GO:0046474;glycerophospholipid biosynthetic process;3.31605266846775e-05!GO:0005762;mitochondrial large ribosomal subunit;3.31605266846775e-05!GO:0000315;organellar large ribosomal subunit;3.31605266846775e-05!GO:0035257;nuclear hormone receptor binding;3.33339705988588e-05!GO:0016563;transcription activator activity;3.76554195699153e-05!GO:0032561;guanyl ribonucleotide binding;3.81390753499272e-05!GO:0019001;guanyl nucleotide binding;3.81390753499272e-05!GO:0006612;protein targeting to membrane;3.87390109726919e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.4454885562324e-05!GO:0008219;cell death;4.48672624923989e-05!GO:0016265;death;4.48672624923989e-05!GO:0006091;generation of precursor metabolites and energy;5.12542827070487e-05!GO:0003724;RNA helicase activity;5.24982205950568e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.52303724651484e-05!GO:0005769;early endosome;5.89870612238664e-05!GO:0006650;glycerophospholipid metabolic process;6.00776288251186e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.27901622665026e-05!GO:0006916;anti-apoptosis;6.36094391678274e-05!GO:0043492;ATPase activity, coupled to movement of substances;6.75227213862343e-05!GO:0016310;phosphorylation;6.83723376861531e-05!GO:0019843;rRNA binding;7.01499064939445e-05!GO:0006643;membrane lipid metabolic process;7.03360911718565e-05!GO:0005815;microtubule organizing center;7.20152026069994e-05!GO:0016126;sterol biosynthetic process;7.39712570483839e-05!GO:0016859;cis-trans isomerase activity;8.54443032772258e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;9.29361588842202e-05!GO:0048523;negative regulation of cellular process;9.33009692011346e-05!GO:0048471;perinuclear region of cytoplasm;9.49178857531409e-05!GO:0051170;nuclear import;0.000104387401824898!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000107592183790998!GO:0046489;phosphoinositide biosynthetic process;0.000116687784325126!GO:0000279;M phase;0.000132176861176986!GO:0005905;coated pit;0.000135973757995446!GO:0030133;transport vesicle;0.000136167628419909!GO:0031902;late endosome membrane;0.00013934023512793!GO:0043021;ribonucleoprotein binding;0.000145410085164497!GO:0015631;tubulin binding;0.000161823280894796!GO:0019899;enzyme binding;0.000174380753307547!GO:0006606;protein import into nucleus;0.000180612484530788!GO:0003714;transcription corepressor activity;0.000196262469686896!GO:0031968;organelle outer membrane;0.000205786862927107!GO:0019867;outer membrane;0.00020904257041449!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000235833541264409!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000259613488322356!GO:0016564;transcription repressor activity;0.000292606573652784!GO:0007034;vacuolar transport;0.000293007540467708!GO:0016363;nuclear matrix;0.000302510515062794!GO:0000314;organellar small ribosomal subunit;0.000316918302694642!GO:0005763;mitochondrial small ribosomal subunit;0.000316918302694642!GO:0009165;nucleotide biosynthetic process;0.000316918302694642!GO:0006383;transcription from RNA polymerase III promoter;0.000344911189752421!GO:0044262;cellular carbohydrate metabolic process;0.00035932742909126!GO:0006672;ceramide metabolic process;0.000375981707118976!GO:0030867;rough endoplasmic reticulum membrane;0.000395920749620034!GO:0042802;identical protein binding;0.000431517429320862!GO:0046519;sphingoid metabolic process;0.000431517429320862!GO:0019748;secondary metabolic process;0.00043952832204036!GO:0033162;melanosome membrane;0.000464063725485869!GO:0045009;chitosome;0.000464063725485869!GO:0003899;DNA-directed RNA polymerase activity;0.000477472649291704!GO:0005885;Arp2/3 protein complex;0.000486636115613801!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000531125597667098!GO:0045454;cell redox homeostasis;0.000538628505664164!GO:0051168;nuclear export;0.000557992116015153!GO:0006818;hydrogen transport;0.000568728358971844!GO:0030658;transport vesicle membrane;0.000568728358971844!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000587237238208483!GO:0007040;lysosome organization and biogenesis;0.000602594502772994!GO:0005741;mitochondrial outer membrane;0.000612529637130935!GO:0030384;phosphoinositide metabolic process;0.000618866683147496!GO:0030118;clathrin coat;0.000627452928905332!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000665540564798625!GO:0005048;signal sequence binding;0.000697707999659266!GO:0008186;RNA-dependent ATPase activity;0.000732246010340358!GO:0005774;vacuolar membrane;0.00075142838588214!GO:0000059;protein import into nucleus, docking;0.000771733898130857!GO:0006695;cholesterol biosynthetic process;0.000791592461926875!GO:0035258;steroid hormone receptor binding;0.000810070477958725!GO:0015992;proton transport;0.000813417651755478!GO:0031072;heat shock protein binding;0.000821701367061888!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00090282264068818!GO:0008250;oligosaccharyl transferase complex;0.000932652925150315!GO:0019752;carboxylic acid metabolic process;0.000946543870525157!GO:0051920;peroxiredoxin activity;0.000967628503974447!GO:0005791;rough endoplasmic reticulum;0.000997266370721814!GO:0051329;interphase of mitotic cell cycle;0.00102441799442774!GO:0043069;negative regulation of programmed cell death;0.00107290642545405!GO:0006082;organic acid metabolic process;0.00107922204005606!GO:0005819;spindle;0.00108099885204653!GO:0003690;double-stranded DNA binding;0.00109382063582375!GO:0022890;inorganic cation transmembrane transporter activity;0.00120534052731298!GO:0004576;oligosaccharyl transferase activity;0.0012072697372587!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0012072697372587!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0012072697372587!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0012072697372587!GO:0043066;negative regulation of apoptosis;0.0012072697372587!GO:0007033;vacuole organization and biogenesis;0.00120886047588226!GO:0003729;mRNA binding;0.00121658169668284!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00122528703551411!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00123018565650728!GO:0043681;protein import into mitochondrion;0.00129787118696853!GO:0006839;mitochondrial transport;0.00140572665500327!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00141193849902602!GO:0033116;ER-Golgi intermediate compartment membrane;0.00146494178103146!GO:0019222;regulation of metabolic process;0.00154730513154126!GO:0048519;negative regulation of biological process;0.00156391349912018!GO:0042158;lipoprotein biosynthetic process;0.00156984772813527!GO:0008033;tRNA processing;0.00162413405360244!GO:0007243;protein kinase cascade;0.00165167264151188!GO:0042981;regulation of apoptosis;0.00165983301648041!GO:0030660;Golgi-associated vesicle membrane;0.00177173692972746!GO:0043284;biopolymer biosynthetic process;0.0017933535639144!GO:0051789;response to protein stimulus;0.00179751976351213!GO:0006986;response to unfolded protein;0.00179751976351213!GO:0048487;beta-tubulin binding;0.00188756192648263!GO:0003682;chromatin binding;0.0018892752732791!GO:0043067;regulation of programmed cell death;0.00194335605131668!GO:0006509;membrane protein ectodomain proteolysis;0.00196650833004071!GO:0033619;membrane protein proteolysis;0.00196650833004071!GO:0004004;ATP-dependent RNA helicase activity;0.00199428606651975!GO:0007006;mitochondrial membrane organization and biogenesis;0.00202134612939586!GO:0044437;vacuolar part;0.00205354724481649!GO:0030027;lamellipodium;0.00217468208473315!GO:0016197;endosome transport;0.00226049956419551!GO:0006497;protein amino acid lipidation;0.00229635928705348!GO:0044452;nucleolar part;0.00231812068002274!GO:0006506;GPI anchor biosynthetic process;0.00242774530451776!GO:0006261;DNA-dependent DNA replication;0.00246649780629841!GO:0006402;mRNA catabolic process;0.0025153181539201!GO:0030663;COPI coated vesicle membrane;0.00252645425336781!GO:0030126;COPI vesicle coat;0.00252645425336781!GO:0006891;intra-Golgi vesicle-mediated transport;0.00252775653409402!GO:0008092;cytoskeletal protein binding;0.00260997665662154!GO:0006338;chromatin remodeling;0.00265039994807311!GO:0006626;protein targeting to mitochondrion;0.00271176550312783!GO:0030036;actin cytoskeleton organization and biogenesis;0.0027440710706553!GO:0051325;interphase;0.00277029227678007!GO:0030880;RNA polymerase complex;0.00287075674282984!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00291625250942062!GO:0006644;phospholipid metabolic process;0.00298207443603592!GO:0003684;damaged DNA binding;0.00307370673434661!GO:0008234;cysteine-type peptidase activity;0.00320301078275629!GO:0006505;GPI anchor metabolic process;0.00321421603746563!GO:0007041;lysosomal transport;0.00344379469535495!GO:0006611;protein export from nucleus;0.00350425889677743!GO:0018196;peptidyl-asparagine modification;0.0035293973758103!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0035293973758103!GO:0050789;regulation of biological process;0.00372410300387562!GO:0048069;eye pigmentation;0.00388304699302693!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00392854478050337!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00413986002499635!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00413986002499635!GO:0005765;lysosomal membrane;0.00414658546906936!GO:0051287;NAD binding;0.00414658546906936!GO:0006778;porphyrin metabolic process;0.00437883188263955!GO:0033013;tetrapyrrole metabolic process;0.00437883188263955!GO:0048500;signal recognition particle;0.00442225528542827!GO:0046483;heterocycle metabolic process;0.00450570303757998!GO:0006352;transcription initiation;0.00452780813932517!GO:0005874;microtubule;0.00462601259503908!GO:0031324;negative regulation of cellular metabolic process;0.00462785223956177!GO:0065009;regulation of a molecular function;0.00464156391107908!GO:0007010;cytoskeleton organization and biogenesis;0.00477562848554557!GO:0006414;translational elongation;0.00483620591434219!GO:0007264;small GTPase mediated signal transduction;0.00497543298144322!GO:0030119;AP-type membrane coat adaptor complex;0.00497543298144322!GO:0000786;nucleosome;0.00502281876577451!GO:0009892;negative regulation of metabolic process;0.00503610719643262!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00504926651952756!GO:0051252;regulation of RNA metabolic process;0.00514551066298077!GO:0006302;double-strand break repair;0.00559627067430386!GO:0030521;androgen receptor signaling pathway;0.0057363657557545!GO:0006289;nucleotide-excision repair;0.00605549960582136!GO:0008287;protein serine/threonine phosphatase complex;0.0060922449713588!GO:0044255;cellular lipid metabolic process;0.00619636588874029!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00627741022781569!GO:0000428;DNA-directed RNA polymerase complex;0.00627741022781569!GO:0030137;COPI-coated vesicle;0.00652750781232873!GO:0051087;chaperone binding;0.00660224535343918!GO:0016251;general RNA polymerase II transcription factor activity;0.00687951396357779!GO:0003711;transcription elongation regulator activity;0.00701049905814014!GO:0008022;protein C-terminus binding;0.00702051757786954!GO:0006582;melanin metabolic process;0.00709778767645931!GO:0006583;melanin biosynthetic process from tyrosine;0.00709778767645931!GO:0042438;melanin biosynthetic process;0.00709778767645931!GO:0043488;regulation of mRNA stability;0.00744968678198532!GO:0043487;regulation of RNA stability;0.00744968678198532!GO:0006779;porphyrin biosynthetic process;0.00751984929151163!GO:0033014;tetrapyrrole biosynthetic process;0.00751984929151163!GO:0005637;nuclear inner membrane;0.00762620335194438!GO:0030518;steroid hormone receptor signaling pathway;0.00767949211822991!GO:0050811;GABA receptor binding;0.00773015990943778!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00773409442685889!GO:0045047;protein targeting to ER;0.00773409442685889!GO:0000096;sulfur amino acid metabolic process;0.00780646023246841!GO:0050681;androgen receptor binding;0.00787374187141996!GO:0003678;DNA helicase activity;0.00787517083235351!GO:0016125;sterol metabolic process;0.00806780677900098!GO:0005869;dynactin complex;0.00808308801703656!GO:0030029;actin filament-based process;0.00829516206696397!GO:0031901;early endosome membrane;0.00843727457402684!GO:0030176;integral to endoplasmic reticulum membrane;0.00851539394047954!GO:0030131;clathrin adaptor complex;0.00885807770290058!GO:0008094;DNA-dependent ATPase activity;0.00919692932920471!GO:0030125;clathrin vesicle coat;0.00919692932920471!GO:0030665;clathrin coated vesicle membrane;0.00919692932920471!GO:0050931;pigment cell differentiation;0.00977817840256208!GO:0030318;melanocyte differentiation;0.00977817840256208!GO:0008312;7S RNA binding;0.00983548585532502!GO:0006310;DNA recombination;0.00986369091767362!GO:0030145;manganese ion binding;0.0100751563165638!GO:0006726;eye pigment biosynthetic process;0.0101290614914485!GO:0042441;eye pigment metabolic process;0.0101290614914485!GO:0008139;nuclear localization sequence binding;0.0102166418065001!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0102536782722203!GO:0004674;protein serine/threonine kinase activity;0.0102536782722203!GO:0000287;magnesium ion binding;0.0108289785009419!GO:0031970;organelle envelope lumen;0.0108334635858205!GO:0051540;metal cluster binding;0.0108419888066198!GO:0051536;iron-sulfur cluster binding;0.0108419888066198!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0109810038878784!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.011130035485594!GO:0008047;enzyme activator activity;0.011394679290255!GO:0001573;ganglioside metabolic process;0.0116295186653761!GO:0004167;dopachrome isomerase activity;0.0116659208061923!GO:0005684;U2-dependent spliceosome;0.0119197613217519!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0119497581730914!GO:0008180;signalosome;0.0119912720638624!GO:0008017;microtubule binding;0.0121544482415347!GO:0007050;cell cycle arrest;0.0121814434986726!GO:0017166;vinculin binding;0.0123349103627336!GO:0050662;coenzyme binding;0.0123733739923479!GO:0042168;heme metabolic process;0.0124765488404089!GO:0003746;translation elongation factor activity;0.0124888895221597!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0125579495469763!GO:0015002;heme-copper terminal oxidase activity;0.0125579495469763!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0125579495469763!GO:0004129;cytochrome-c oxidase activity;0.0125579495469763!GO:0000209;protein polyubiquitination;0.0127490895622212!GO:0048154;S100 beta binding;0.0127791630104079!GO:0006520;amino acid metabolic process;0.0131420935531836!GO:0001726;ruffle;0.0137243674233677!GO:0051539;4 iron, 4 sulfur cluster binding;0.0138337850933278!GO:0006665;sphingolipid metabolic process;0.0144188335624324!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0146941451583686!GO:0030127;COPII vesicle coat;0.0147760208630677!GO:0012507;ER to Golgi transport vesicle membrane;0.0147760208630677!GO:0004503;monophenol monooxygenase activity;0.0148475355715175!GO:0016716;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen;0.0148475355715175!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0149131378412997!GO:0016408;C-acyltransferase activity;0.015255695925253!GO:0004527;exonuclease activity;0.0154587829482083!GO:0031529;ruffle organization and biogenesis;0.015713262971754!GO:0005975;carbohydrate metabolic process;0.0157362805056534!GO:0019377;glycolipid catabolic process;0.0157362805056534!GO:0046479;glycosphingolipid catabolic process;0.0159139635133367!GO:0008361;regulation of cell size;0.0164854956028283!GO:0042393;histone binding;0.0168003517270502!GO:0045045;secretory pathway;0.0168369896006007!GO:0006401;RNA catabolic process;0.0173693941962634!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0174252355334765!GO:0010257;NADH dehydrogenase complex assembly;0.0174252355334765!GO:0033108;mitochondrial respiratory chain complex assembly;0.0174252355334765!GO:0005669;transcription factor TFIID complex;0.0176792405370803!GO:0030134;ER to Golgi transport vesicle;0.0178564153751005!GO:0016741;transferase activity, transferring one-carbon groups;0.0180650882338714!GO:0008154;actin polymerization and/or depolymerization;0.0180757900131464!GO:0006730;one-carbon compound metabolic process;0.018264349210422!GO:0005832;chaperonin-containing T-complex;0.0183972977392781!GO:0043022;ribosome binding;0.0185930028251735!GO:0016044;membrane organization and biogenesis;0.0189814913787371!GO:0051452;cellular pH reduction;0.0189814913787371!GO:0051453;regulation of cellular pH;0.0189814913787371!GO:0045851;pH reduction;0.0189814913787371!GO:0033673;negative regulation of kinase activity;0.0190349368575516!GO:0006469;negative regulation of protein kinase activity;0.0190349368575516!GO:0008168;methyltransferase activity;0.0192606586530973!GO:0001725;stress fiber;0.0192860605204292!GO:0032432;actin filament bundle;0.0192860605204292!GO:0007021;tubulin folding;0.0197227399203235!GO:0016860;intramolecular oxidoreductase activity;0.0203690921998695!GO:0031301;integral to organelle membrane;0.0204050738146684!GO:0030132;clathrin coat of coated pit;0.020577068781002!GO:0006783;heme biosynthetic process;0.0211378947980486!GO:0051128;regulation of cellular component organization and biogenesis;0.0214408120219076!GO:0016272;prefoldin complex;0.0215187358528553!GO:0007051;spindle organization and biogenesis;0.0217549891796193!GO:0005657;replication fork;0.0223670162763458!GO:0005758;mitochondrial intermembrane space;0.0230647176094734!GO:0035035;histone acetyltransferase binding;0.023133412003589!GO:0009066;aspartate family amino acid metabolic process;0.023133412003589!GO:0006595;polyamine metabolic process;0.0232633057267105!GO:0008320;protein transmembrane transporter activity;0.0242509282238492!GO:0022406;membrane docking;0.0242509282238492!GO:0048278;vesicle docking;0.0242509282238492!GO:0016584;nucleosome positioning;0.0248408846490954!GO:0000075;cell cycle checkpoint;0.0249936183324761!GO:0051348;negative regulation of transferase activity;0.0251724270062657!GO:0000049;tRNA binding;0.0252732276744415!GO:0000339;RNA cap binding;0.0254691744935394!GO:0044438;microbody part;0.0254691744935394!GO:0044439;peroxisomal part;0.0254691744935394!GO:0016481;negative regulation of transcription;0.0254995756449222!GO:0006007;glucose catabolic process;0.0258479227521387!GO:0050790;regulation of catalytic activity;0.0260586763640515!GO:0008538;proteasome activator activity;0.0265799186628489!GO:0006376;mRNA splice site selection;0.0269679854665112!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0269679854665112!GO:0009967;positive regulation of signal transduction;0.0272373927385923!GO:0004003;ATP-dependent DNA helicase activity;0.0272539010867894!GO:0008299;isoprenoid biosynthetic process;0.0274068047668245!GO:0030140;trans-Golgi network transport vesicle;0.0278592246018318!GO:0032508;DNA duplex unwinding;0.0281856001946293!GO:0032392;DNA geometric change;0.0281856001946293!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0284103156118688!GO:0016049;cell growth;0.0284773903420177!GO:0008632;apoptotic program;0.0286662351997124!GO:0006914;autophagy;0.0286893457901452!GO:0030149;sphingolipid catabolic process;0.0290486341489581!GO:0004722;protein serine/threonine phosphatase activity;0.0292314607674707!GO:0004563;beta-N-acetylhexosaminidase activity;0.0298896868572346!GO:0016407;acetyltransferase activity;0.0301465315719125!GO:0031124;mRNA 3'-end processing;0.0302977350825755!GO:0007030;Golgi organization and biogenesis;0.0305317376298676!GO:0004177;aminopeptidase activity;0.0310105032237231!GO:0006417;regulation of translation;0.0313807183894118!GO:0006220;pyrimidine nucleotide metabolic process;0.0318272627430488!GO:0001558;regulation of cell growth;0.0318364598698072!GO:0000118;histone deacetylase complex;0.0329720083252285!GO:0008601;protein phosphatase type 2A regulator activity;0.0331980428856619!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0333836809054637!GO:0003923;GPI-anchor transamidase activity;0.0334700116726052!GO:0016255;attachment of GPI anchor to protein;0.0334700116726052!GO:0042765;GPI-anchor transamidase complex;0.0334700116726052!GO:0006405;RNA export from nucleus;0.0337883188776487!GO:0016790;thiolester hydrolase activity;0.0340977038768473!GO:0030522;intracellular receptor-mediated signaling pathway;0.0342570295000415!GO:0004518;nuclease activity;0.0344300960210367!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0344313591085659!GO:0046813;virion attachment, binding of host cell surface receptor;0.0344313591085659!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0344313591085659!GO:0006904;vesicle docking during exocytosis;0.0349330253140891!GO:0006740;NADPH regeneration;0.0350187954214376!GO:0006098;pentose-phosphate shunt;0.0350187954214376!GO:0045947;negative regulation of translational initiation;0.0362545349985857!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0364034064509936!GO:0045792;negative regulation of cell size;0.0367288152324953!GO:0043087;regulation of GTPase activity;0.0370803927626564!GO:0004197;cysteine-type endopeptidase activity;0.0372753706997867!GO:0006767;water-soluble vitamin metabolic process;0.0372995507803569!GO:0005876;spindle microtubule;0.0381405189149007!GO:0006689;ganglioside catabolic process;0.0386488712032864!GO:0008637;apoptotic mitochondrial changes;0.0387223074733146!GO:0048037;cofactor binding;0.0387876739427912!GO:0016579;protein deubiquitination;0.0396733240182356!GO:0006518;peptide metabolic process;0.0397085885633789!GO:0030496;midbody;0.0399244457952877!GO:0019783;small conjugating protein-specific protease activity;0.0406251020214832!GO:0009003;signal peptidase activity;0.0408027760154662!GO:0005784;translocon complex;0.0411056115968647!GO:0006378;mRNA polyadenylation;0.0411056115968647!GO:0050178;phenylpyruvate tautomerase activity;0.041266876804156!GO:0030911;TPR domain binding;0.0416463899469391!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0416463899469391!GO:0004216;cathepsin K activity;0.0421348982434955!GO:0006629;lipid metabolic process;0.0421620783746608!GO:0009303;rRNA transcription;0.0426812580285738!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.042695887091534!GO:0012510;trans-Golgi network transport vesicle membrane;0.042695887091534!GO:0030508;thiol-disulfide exchange intermediate activity;0.042742321433543!GO:0043130;ubiquitin binding;0.0427600886185766!GO:0032182;small conjugating protein binding;0.0427600886185766!GO:0005777;peroxisome;0.0429951663251255!GO:0042579;microbody;0.0429951663251255!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0429951663251255!GO:0006066;alcohol metabolic process;0.0430765252150169!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0432659411617809!GO:0031371;ubiquitin conjugating enzyme complex;0.0434473685022691!GO:0031903;microbody membrane;0.043477026663007!GO:0005778;peroxisomal membrane;0.043477026663007!GO:0031323;regulation of cellular metabolic process;0.0438421823300323!GO:0016311;dephosphorylation;0.0442394961415327!GO:0043414;biopolymer methylation;0.0442732065483982!GO:0030308;negative regulation of cell growth;0.0448540962381671!GO:0006268;DNA unwinding during replication;0.0448995713214787!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0451974639352882!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0456226682541696!GO:0050749;apolipoprotein E receptor binding;0.0456226682541696!GO:0032984;macromolecular complex disassembly;0.0456226682541696!GO:0030041;actin filament polymerization;0.0459545554438259!GO:0004843;ubiquitin-specific protease activity;0.0459545554438259!GO:0030503;regulation of cell redox homeostasis;0.0460426252063819!GO:0003702;RNA polymerase II transcription factor activity;0.0460426252063819!GO:0016301;kinase activity;0.0461673948832565!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0465434126888508!GO:0006144;purine base metabolic process;0.0468987101340521!GO:0016746;transferase activity, transferring acyl groups;0.0476982743171366!GO:0005938;cell cortex;0.0497860254601114!GO:0000776;kinetochore;0.0497877713899251 | |||
|sample_id=12837 | |sample_id=12837 | ||
|sample_note= | |sample_note= | ||
| Line 75: | Line 99: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|timecourse=Melanocytic_differentiation | |||
|top_motifs=HOX{A6,A7,B6,B7}:2.82523004652;PAX6:2.37931126378;NR3C1:2.22951145333;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.21102716681;SREBF1,2:2.05953754311;ESRRA:1.82850888911;NFE2L1:1.81532369652;bHLH_family:1.33983178621;NANOG:1.33484325844;RXR{A,B,G}:1.26701883261;FOXQ1:1.2612032939;NFIX:1.26014394747;PAX4:1.21339652457;PAX8:1.10051908053;POU3F1..4:1.01542560356;ZNF423:0.854513904922;RFX2..5_RFXANK_RFXAP:0.849400969167;HOX{A4,D4}:0.817764521183;NR5A1,2:0.760836630975;NKX2-3_NKX2-5:0.742856843509;TFDP1:0.717513577027;POU6F1:0.696912504926;SOX5:0.696382466368;VSX1,2:0.686059674816;EN1,2:0.684810628115;PAX1,9:0.623355721616;PRRX1,2:0.612253979892;XCPE1{core}:0.570724518348;EBF1:0.546442763347;LHX3,4:0.528616930818;POU1F1:0.528516311636;IRF7:0.509719211221;PBX1:0.504335845292;ZNF143:0.498586900055;HES1:0.492382389047;ALX1:0.484659421617;NRF1:0.480602153696;OCT4_SOX2{dimer}:0.478515388124;EVI1:0.476454107479;PAX5:0.460257525415;SOX{8,9,10}:0.455445549273;ZNF238:0.440845673193;TP53:0.438769441964;NHLH1,2:0.42266484785;CDC5L:0.378950927766;GFI1:0.366324585971;HBP1_HMGB_SSRP1_UBTF:0.346668194017;ZFP161:0.342633918769;GTF2A1,2:0.320595216828;XBP1:0.296612348071;STAT1,3:0.277615569671;HNF4A_NR2F1,2:0.27467920168;REST:0.249384869845;TFCP2:0.229109415819;ZBTB6:0.226403107799;ELK1,4_GABP{A,B1}:0.205753655166;JUN:0.204298979106;IRF1,2:0.194709506851;HMX1:0.173328047419;CUX2:0.170693831712;ALX4:0.166134455606;HIC1:0.152638467064;AHR_ARNT_ARNT2:0.146318764551;GFI1B:0.141042245969;YY1:0.138721536399;SOX2:0.13561505764;TLX1..3_NFIC{dimer}:0.114482732594;GTF2I:0.0868266665331;TEF:0.0657764537925;ONECUT1,2:0.0589022435799;FOXD3:0.0500054434733;UFEwm:0.033574741423;SP1:0.0217620376949;FOX{F1,F2,J1}:0.0149635501442;RORA:0.00121271743072;RFX1:-0.0244456323182;SPZ1:-0.0469498447487;E2F1..5:-0.0489623415284;NFY{A,B,C}:-0.05099384617;TOPORS:-0.0584834155134;ZBTB16:-0.0637249555099;TFAP2B:-0.0675572669348;NKX6-1,2:-0.076930350153;IKZF2:-0.0927388956845;ATF4:-0.103390992583;MYBL2:-0.108281560141;FOX{D1,D2}:-0.129601238261;AR:-0.14893646472;HOXA9_MEIS1:-0.153357387916;RXRA_VDR{dimer}:-0.157487934772;NFIL3:-0.159279509675;HNF1A:-0.166228878406;RUNX1..3:-0.173638667413;ADNP_IRX_SIX_ZHX:-0.177742390857;ATF5_CREB3:-0.1792406099;ELF1,2,4:-0.183410128947;SOX17:-0.204689973796;CREB1:-0.20478443795;MED-1{core}:-0.221466296769;SMAD1..7,9:-0.22712788237;FOXP3:-0.244750303399;SPIB:-0.246844690654;ESR1:-0.248072684153;NFE2L2:-0.255936553969;TEAD1:-0.256464429754;TFAP2{A,C}:-0.257581995728;PAX2:-0.261980857033;KLF4:-0.268187731077;FOXL1:-0.273114989952;NKX3-1:-0.277470335942;EP300:-0.277477845363;MYB:-0.278128820165;CDX1,2,4:-0.284112741213;FOXA2:-0.300233314589;DMAP1_NCOR{1,2}_SMARC:-0.305473509332;TGIF1:-0.308647192204;SPI1:-0.312022871134;FOSL2:-0.312542571236;PRDM1:-0.319991504477;LMO2:-0.321772159609;MAZ:-0.326773955022;BACH2:-0.332418897769;TAL1_TCF{3,4,12}:-0.333787951763;IKZF1:-0.342738073554;FOXM1:-0.348949015378;BPTF:-0.36711811403;MYFfamily:-0.369473802566;CRX:-0.377031087798;MTF1:-0.393406585673;FOX{I1,J2}:-0.393698994353;PITX1..3:-0.402209202726;MEF2{A,B,C,D}:-0.40521800355;STAT5{A,B}:-0.405851466904;NR1H4:-0.407993539143;GZF1:-0.414385858443;ARID5B:-0.419398909356;GATA4:-0.425545801601;BREu{core}:-0.431172580733;HAND1,2:-0.433618255999;NKX3-2:-0.435859331689;LEF1_TCF7_TCF7L1,2:-0.436894281686;FOXO1,3,4:-0.442744323198;ZIC1..3:-0.444487545664;NFE2:-0.449509709673;HOX{A5,B5}:-0.454666000016;FOS_FOS{B,L1}_JUN{B,D}:-0.466251045266;NFKB1_REL_RELA:-0.471442841498;NKX2-2,8:-0.485233738863;RREB1:-0.492222106502;ZNF384:-0.505868390489;ZNF148:-0.510074193027;NFATC1..3:-0.512479546024;HMGA1,2:-0.51553586654;AIRE:-0.52391724998;ETS1,2:-0.532831903041;HLF:-0.539558369196;CEBPA,B_DDIT3:-0.561557504097;ATF2:-0.565760884381;FOXP1:-0.572069006264;PATZ1:-0.578109196776;MZF1:-0.589237582855;EGR1..3:-0.602375354063;NR6A1:-0.624983721795;SNAI1..3:-0.635961454218;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.669279537388;RBPJ:-0.684783534835;HSF1,2:-0.686164213159;GATA6:-0.687199729383;STAT2,4,6:-0.69361497823;MTE{core}:-0.697072206357;GCM1,2:-0.704201941951;DBP:-0.725954757002;TFAP4:-0.736770869254;PAX3,7:-0.788523683131;NANOG{mouse}:-0.789769138688;POU2F1..3:-0.803658823478;PPARG:-0.807213226966;ZEB1:-0.810736106864;T:-0.916828020551;GLI1..3:-0.932134555477;PDX1:-0.962366307434;TLX2:-1.02515145216;SRF:-1.04850774786;MAFB:-1.0658466004;MYOD1:-1.08633491132;FOXN1:-1.10159462127;HIF1A:-1.18238202912;TBX4,5:-1.21927138699;NKX2-1,4:-1.26330974154;ATF6:-1.39347525317;POU5F1:-1.72163507413;TBP:-1.81062515908 | |top_motifs=HOX{A6,A7,B6,B7}:2.82523004652;PAX6:2.37931126378;NR3C1:2.22951145333;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.21102716681;SREBF1,2:2.05953754311;ESRRA:1.82850888911;NFE2L1:1.81532369652;bHLH_family:1.33983178621;NANOG:1.33484325844;RXR{A,B,G}:1.26701883261;FOXQ1:1.2612032939;NFIX:1.26014394747;PAX4:1.21339652457;PAX8:1.10051908053;POU3F1..4:1.01542560356;ZNF423:0.854513904922;RFX2..5_RFXANK_RFXAP:0.849400969167;HOX{A4,D4}:0.817764521183;NR5A1,2:0.760836630975;NKX2-3_NKX2-5:0.742856843509;TFDP1:0.717513577027;POU6F1:0.696912504926;SOX5:0.696382466368;VSX1,2:0.686059674816;EN1,2:0.684810628115;PAX1,9:0.623355721616;PRRX1,2:0.612253979892;XCPE1{core}:0.570724518348;EBF1:0.546442763347;LHX3,4:0.528616930818;POU1F1:0.528516311636;IRF7:0.509719211221;PBX1:0.504335845292;ZNF143:0.498586900055;HES1:0.492382389047;ALX1:0.484659421617;NRF1:0.480602153696;OCT4_SOX2{dimer}:0.478515388124;EVI1:0.476454107479;PAX5:0.460257525415;SOX{8,9,10}:0.455445549273;ZNF238:0.440845673193;TP53:0.438769441964;NHLH1,2:0.42266484785;CDC5L:0.378950927766;GFI1:0.366324585971;HBP1_HMGB_SSRP1_UBTF:0.346668194017;ZFP161:0.342633918769;GTF2A1,2:0.320595216828;XBP1:0.296612348071;STAT1,3:0.277615569671;HNF4A_NR2F1,2:0.27467920168;REST:0.249384869845;TFCP2:0.229109415819;ZBTB6:0.226403107799;ELK1,4_GABP{A,B1}:0.205753655166;JUN:0.204298979106;IRF1,2:0.194709506851;HMX1:0.173328047419;CUX2:0.170693831712;ALX4:0.166134455606;HIC1:0.152638467064;AHR_ARNT_ARNT2:0.146318764551;GFI1B:0.141042245969;YY1:0.138721536399;SOX2:0.13561505764;TLX1..3_NFIC{dimer}:0.114482732594;GTF2I:0.0868266665331;TEF:0.0657764537925;ONECUT1,2:0.0589022435799;FOXD3:0.0500054434733;UFEwm:0.033574741423;SP1:0.0217620376949;FOX{F1,F2,J1}:0.0149635501442;RORA:0.00121271743072;RFX1:-0.0244456323182;SPZ1:-0.0469498447487;E2F1..5:-0.0489623415284;NFY{A,B,C}:-0.05099384617;TOPORS:-0.0584834155134;ZBTB16:-0.0637249555099;TFAP2B:-0.0675572669348;NKX6-1,2:-0.076930350153;IKZF2:-0.0927388956845;ATF4:-0.103390992583;MYBL2:-0.108281560141;FOX{D1,D2}:-0.129601238261;AR:-0.14893646472;HOXA9_MEIS1:-0.153357387916;RXRA_VDR{dimer}:-0.157487934772;NFIL3:-0.159279509675;HNF1A:-0.166228878406;RUNX1..3:-0.173638667413;ADNP_IRX_SIX_ZHX:-0.177742390857;ATF5_CREB3:-0.1792406099;ELF1,2,4:-0.183410128947;SOX17:-0.204689973796;CREB1:-0.20478443795;MED-1{core}:-0.221466296769;SMAD1..7,9:-0.22712788237;FOXP3:-0.244750303399;SPIB:-0.246844690654;ESR1:-0.248072684153;NFE2L2:-0.255936553969;TEAD1:-0.256464429754;TFAP2{A,C}:-0.257581995728;PAX2:-0.261980857033;KLF4:-0.268187731077;FOXL1:-0.273114989952;NKX3-1:-0.277470335942;EP300:-0.277477845363;MYB:-0.278128820165;CDX1,2,4:-0.284112741213;FOXA2:-0.300233314589;DMAP1_NCOR{1,2}_SMARC:-0.305473509332;TGIF1:-0.308647192204;SPI1:-0.312022871134;FOSL2:-0.312542571236;PRDM1:-0.319991504477;LMO2:-0.321772159609;MAZ:-0.326773955022;BACH2:-0.332418897769;TAL1_TCF{3,4,12}:-0.333787951763;IKZF1:-0.342738073554;FOXM1:-0.348949015378;BPTF:-0.36711811403;MYFfamily:-0.369473802566;CRX:-0.377031087798;MTF1:-0.393406585673;FOX{I1,J2}:-0.393698994353;PITX1..3:-0.402209202726;MEF2{A,B,C,D}:-0.40521800355;STAT5{A,B}:-0.405851466904;NR1H4:-0.407993539143;GZF1:-0.414385858443;ARID5B:-0.419398909356;GATA4:-0.425545801601;BREu{core}:-0.431172580733;HAND1,2:-0.433618255999;NKX3-2:-0.435859331689;LEF1_TCF7_TCF7L1,2:-0.436894281686;FOXO1,3,4:-0.442744323198;ZIC1..3:-0.444487545664;NFE2:-0.449509709673;HOX{A5,B5}:-0.454666000016;FOS_FOS{B,L1}_JUN{B,D}:-0.466251045266;NFKB1_REL_RELA:-0.471442841498;NKX2-2,8:-0.485233738863;RREB1:-0.492222106502;ZNF384:-0.505868390489;ZNF148:-0.510074193027;NFATC1..3:-0.512479546024;HMGA1,2:-0.51553586654;AIRE:-0.52391724998;ETS1,2:-0.532831903041;HLF:-0.539558369196;CEBPA,B_DDIT3:-0.561557504097;ATF2:-0.565760884381;FOXP1:-0.572069006264;PATZ1:-0.578109196776;MZF1:-0.589237582855;EGR1..3:-0.602375354063;NR6A1:-0.624983721795;SNAI1..3:-0.635961454218;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.669279537388;RBPJ:-0.684783534835;HSF1,2:-0.686164213159;GATA6:-0.687199729383;STAT2,4,6:-0.69361497823;MTE{core}:-0.697072206357;GCM1,2:-0.704201941951;DBP:-0.725954757002;TFAP4:-0.736770869254;PAX3,7:-0.788523683131;NANOG{mouse}:-0.789769138688;POU2F1..3:-0.803658823478;PPARG:-0.807213226966;ZEB1:-0.810736106864;T:-0.916828020551;GLI1..3:-0.932134555477;PDX1:-0.962366307434;TLX2:-1.02515145216;SRF:-1.04850774786;MAFB:-1.0658466004;MYOD1:-1.08633491132;FOXN1:-1.10159462127;HIF1A:-1.18238202912;TBX4,5:-1.21927138699;NKX2-1,4:-1.26330974154;ATF6:-1.39347525317;POU5F1:-1.72163507413;TBP:-1.81062515908 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12837-137B2;search_select_hide=table117:FF:12837-137B2 | |||
}} | }} | ||
Latest revision as of 18:46, 4 June 2020
| Name: | Melanocyte, donor3 (MC+3) |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13406 |
| Sample type: | time courses |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13406
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13406
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.936 |
| 10 | 10 | 0.654 |
| 100 | 100 | 0.471 |
| 101 | 101 | 0.757 |
| 102 | 102 | 0.193 |
| 103 | 103 | 0.0264 |
| 104 | 104 | 0.968 |
| 105 | 105 | 0.0719 |
| 106 | 106 | 0.00266 |
| 107 | 107 | 0.00535 |
| 108 | 108 | 0.741 |
| 109 | 109 | 0.969 |
| 11 | 11 | 0.452 |
| 110 | 110 | 0.103 |
| 111 | 111 | 0.878 |
| 112 | 112 | 0.615 |
| 113 | 113 | 0.0186 |
| 114 | 114 | 0.263 |
| 115 | 115 | 0.634 |
| 116 | 116 | 0.0236 |
| 117 | 117 | 0.496 |
| 118 | 118 | 0.343 |
| 119 | 119 | 0.256 |
| 12 | 12 | 0.398 |
| 120 | 120 | 0.439 |
| 121 | 121 | 0.1 |
| 122 | 122 | 0.724 |
| 123 | 123 | 0.346 |
| 124 | 124 | 0.69 |
| 125 | 125 | 0.137 |
| 126 | 126 | 0.442 |
| 127 | 127 | 0.907 |
| 128 | 128 | 0.684 |
| 129 | 129 | 0.254 |
| 13 | 13 | 0.459 |
| 130 | 130 | 0.831 |
| 131 | 131 | 0.426 |
| 132 | 132 | 0.258 |
| 133 | 133 | 0.792 |
| 134 | 134 | 0.632 |
| 135 | 135 | 0.563 |
| 136 | 136 | 0.0269 |
| 137 | 137 | 0.678 |
| 138 | 138 | 0.428 |
| 139 | 139 | 0.0466 |
| 14 | 14 | 0.826 |
| 140 | 140 | 0.44 |
| 141 | 141 | 0.705 |
| 142 | 142 | 0.112 |
| 143 | 143 | 0.455 |
| 144 | 144 | 0.509 |
| 145 | 145 | 0.851 |
| 146 | 146 | 0.344 |
| 147 | 147 | 0.629 |
| 148 | 148 | 0.316 |
| 149 | 149 | 0.239 |
| 15 | 15 | 0.746 |
| 150 | 150 | 0.396 |
| 151 | 151 | 0.992 |
| 152 | 152 | 0.271 |
| 153 | 153 | 0.641 |
| 154 | 154 | 0.119 |
| 155 | 155 | 0.821 |
| 156 | 156 | 0.899 |
| 157 | 157 | 0.394 |
| 158 | 158 | 0.142 |
| 159 | 159 | 0.264 |
| 16 | 16 | 0.684 |
| 160 | 160 | 0.743 |
| 161 | 161 | 0.679 |
| 162 | 162 | 0.137 |
| 163 | 163 | 0.746 |
| 164 | 164 | 0.759 |
| 165 | 165 | 0.305 |
| 166 | 166 | 0.244 |
| 167 | 167 | 0.431 |
| 168 | 168 | 0.841 |
| 169 | 169 | 0.252 |
| 17 | 17 | 0.492 |
| 18 | 18 | 0.505 |
| 19 | 19 | 0.674 |
| 2 | 2 | 0.0419 |
| 20 | 20 | 0.21 |
| 21 | 21 | 0.441 |
| 22 | 22 | 0.529 |
| 23 | 23 | 0.0846 |
| 24 | 24 | 0.551 |
| 25 | 25 | 0.531 |
| 26 | 26 | 0.433 |
| 27 | 27 | 0.667 |
| 28 | 28 | 0.849 |
| 29 | 29 | 0.116 |
| 3 | 3 | 0.89 |
| 30 | 30 | 0.186 |
| 31 | 31 | 0.292 |
| 32 | 32 | 0.00567 |
| 33 | 33 | 0.585 |
| 34 | 34 | 0.605 |
| 35 | 35 | 0.52 |
| 36 | 36 | 0.837 |
| 37 | 37 | 0.297 |
| 38 | 38 | 0.864 |
| 39 | 39 | 0.775 |
| 4 | 4 | 0.159 |
| 40 | 40 | 0.233 |
| 41 | 41 | 0.502 |
| 42 | 42 | 0.265 |
| 43 | 43 | 0.316 |
| 44 | 44 | 0.246 |
| 45 | 45 | 0.232 |
| 46 | 46 | 0.918 |
| 47 | 47 | 0.575 |
| 48 | 48 | 0.464 |
| 49 | 49 | 0.273 |
| 5 | 5 | 0.592 |
| 50 | 50 | 0.867 |
| 51 | 51 | 0.988 |
| 52 | 52 | 0.246 |
| 53 | 53 | 0.31 |
| 54 | 54 | 0.898 |
| 55 | 55 | 0.22 |
| 56 | 56 | 0.748 |
| 57 | 57 | 0.121 |
| 58 | 58 | 0.0589 |
| 59 | 59 | 0.481 |
| 6 | 6 | 0.0855 |
| 60 | 60 | 0.16 |
| 61 | 61 | 0.663 |
| 62 | 62 | 0.00317 |
| 63 | 63 | 0.633 |
| 64 | 64 | 0.822 |
| 65 | 65 | 0.901 |
| 66 | 66 | 0.171 |
| 67 | 67 | 0.454 |
| 68 | 68 | 0.0189 |
| 69 | 69 | 0.991 |
| 7 | 7 | 0.765 |
| 70 | 70 | 0.861 |
| 71 | 71 | 0.514 |
| 72 | 72 | 0.67 |
| 73 | 73 | 0.558 |
| 74 | 74 | 0.867 |
| 75 | 75 | 0.85 |
| 76 | 76 | 0.304 |
| 77 | 77 | 0.371 |
| 78 | 78 | 0.327 |
| 79 | 79 | 0.768 |
| 8 | 8 | 0.878 |
| 80 | 80 | 0.647 |
| 81 | 81 | 0.526 |
| 82 | 82 | 0.86 |
| 83 | 83 | 0.558 |
| 84 | 84 | 0.828 |
| 85 | 85 | 0.934 |
| 86 | 86 | 0.849 |
| 87 | 87 | 0.0269 |
| 88 | 88 | 0.581 |
| 89 | 89 | 0.826 |
| 9 | 9 | 0.302 |
| 90 | 90 | 0.385 |
| 91 | 91 | 0.754 |
| 92 | 92 | 0.025 |
| 93 | 93 | 0.157 |
| 94 | 94 | 0.896 |
| 95 | 95 | 0.343 |
| 96 | 96 | 0.614 |
| 97 | 97 | 0.625 |
| 98 | 98 | 0.111 |
| 99 | 99 | 0.45 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13406
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000150 glandular epithelial cell
EFO:0002091 biological replicate
FF:0000730 human melanocyte (MC) sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000150 (glandular epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000148 (melanocyte)
FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0000730 (human melanocyte (MC) sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
