FF:10643-109A4: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (22 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005162 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007878;DRR008750;DRZ000175;DRZ001560;DRZ011525;DRZ012910 | ||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000499,CL:0000255,CL:0002076,CL:0002149,CL:0002255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:193,DOID:305,DOID:120,DOID:299,DOID:3001 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167,FF:0100658,FF:0101555 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120,FF:0101555 | |fonse_cell_line=FF:0101120,FF:0101555 | ||
|fonse_cell_line_closure=FF:0101120,FF:0101555 | |fonse_cell_line_closure=FF:0101120,FF:0101555 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/endometrioid%2520adenocarcinoma%2520cell%2520line%253aJHUEM-1.CNhs11748.10643-109A4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/endometrioid%2520adenocarcinoma%2520cell%2520line%253aJHUEM-1.CNhs11748.10643-109A4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/endometrioid%2520adenocarcinoma%2520cell%2520line%253aJHUEM-1.CNhs11748.10643-109A4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/endometrioid%2520adenocarcinoma%2520cell%2520line%253aJHUEM-1.CNhs11748.10643-109A4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/endometrioid%2520adenocarcinoma%2520cell%2520line%253aJHUEM-1.CNhs11748.10643-109A4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10643-109A4 | |id=FF:10643-109A4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100658;;FF:0101555 | ||
|is_obsolete= | |||
|library_id=CNhs11748 | |||
|library_id_phase_based=2:CNhs11748 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10643 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10643 | |||
|name=endometrioid adenocarcinoma cell line:JHUEM-1 | |name=endometrioid adenocarcinoma cell line:JHUEM-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11748,LSID819,release009,COMPLETED | |profile_hcage=CNhs11748,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0647030576081725,0,0,0,0,0.0217195798599962,0,-0.0483874695290201,0.222571107135551,0,0,0,0,0,0,0,0,0,0,0,0.0695052016201444,0,0.0756516523160662,0,0,0,0,0,0.458754104889948,0,0,-0.00355047456251761,0,0,0,0,0,0,0,0,0,0,0,0,0.0737629739431051,0.129406115216345,0,0,0,0,0,0,0,0.066803783860357,0,0,0,0,0,-0.0535504222082638,0,0.131982301421889,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0111105440648563,0,0,0,0,0,0,-0.246781663825458,0.0347526008100722,0,0,-0.000537220874119337,0.18010859476063,0,0,0,0,-0.0980353512377064,0.266951796750763,0,0,0,0.129406115216345,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0316705363142886,0.0695052016201444,0,0,0.0668487976747876,0.169663013958599,0,0,0.129406115216345,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0.0695052016201444,0,0.0695052016201444,0,0,0,-0.0182042126210706,0.0347526008100722,0.122567557038194,0.265070364189913,0.0347526008100722,0,-0.427279086909571,0,0,0,0,0.0695052016201444,0,0,0,0,-0.128119866952565,0,0.178562111075179,0.0695052016201444,0,0,0,0.0161273197262215,-0.305472230898407,0,0.167189499167372,0.113693348869014,0,0,0,0,0.24186284804286,0,0.189039782808151,-0.0827201683234173,0.8565547299719,-0.150126148122349,0.00316056922653896,0,0,0,-0.59847616058002,0.372629001024246,0,0,0.0138851816775962,-0.181349618560659,0,0,-0.391044581551635,0,-0.0965274520797472,0.258340342792069,0,0.13939129606967,0,0,0.0695052016201444,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.0556585298200286,0.105432594446644,0.309919266601891,0.408585506713385,0,0.12186857516929,0,0.0361956084316215,-0.101956089097627,-0.200126774864716,-0.0984542868240555,-0.0148558568089127,0,-0.120352117063531,-0.167763900708757,0.0285211019810413,-0.0502214508364994,-0.147401849371139,-0.189981719549847,0.00394474598857159,-0.123794482010859,0.15871255787247,0,-0.246781663825458,0,-0.43854130609424,0.282502782490208,0,0.556712001158006,-0.0638722616284436,0.683180915093984,0,-0.0891103253876817,0.35958661306691,0.00171632626742729,0.0378825769457214,-0.281363547200181,0.157641796114205,-0.186070865179415,-0.0395325284566706,-0.275398842950212,-0.00658629225789615,-0.177105506065767,0.0523645367218171,0,0.00717615106702696,0.0490069465323996,0.0845918920060001,-0.103104885057962,0,-0.174058195209089,0.0610618541389764,0.0647030576081725,-0.065079564361457,-0.0186812987693679,0,0.0695052016201444,-0.141725051220798,0,0,0,0.00437028164323877,0.0695052016201444,0.0211453700700845,-0.194134457478893,-0.1633503599354,0,-0.056925143543869,0,0.010377212277489,0,-0.176981908765984,-0.146009897457394,0,-0.070416748594033,0,0.0371468455118738,0.439102226355875,0.0806946499368344,0.290711987901116,0.0709592884045195,-0.0475768131419666,-0.0751511209802649,-0.277696084445878,0.172827942705218,0.185611570008478,-0.0881268324752877,-0.0489874865010285,-0.88354475051838,0.676431429550258,-0.0691553133074144,-0.413112269990029,0.0188291770135537,-0.0897016608611005,0,-0.0521712050803846,0,-0.213003366034728,0.0562200243169627,0.0496442630951784,-0.274554647215874,0,0.0156375291224902,-0.41000970934149,0,0.0161198475834785,-0.0102929751410919,1.13576409530399,0.0316705266117429,0.0828540889849708,-0.146947370256417,0.274845407521407,0,0.225791807195963,0,0,-0.113166930090984,0.0744432288375027,0,0.177060598680145,0.240498413330287,0.0111105440648563,-0.0464658718147897,0,0,0.193213646811062,0,0,0.556566431501403,-0.0160891109214265,0.16076673153892,-0.123920226270411,0.00426081257798838,0.390897478006679,0,0.0695052016201444,0.692976233148147,0,-0.509805128316085,0,0,-0.158862491625632,-0.116628112990133,0,0,0,0,0,0,0,0,0,0,0,-0.00993643712515269,0.0232878982160361,0,0.00507306095667892,0,0,0,0.228974662664494,0.182037609946382,0,0,0,-0.440331913141236,0,0.105957246988074,0.091018804973191,0,0,0,-0.215723402553475,-0.133731360474579,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0.325211794144693,0,-0.057730457053664,-0.0520780617862122,0,0,0,0.464398391881381,0,0,0,0,-0.072916624318569,0,0,0.0184934149030074,0,-0.130764166360607,0.22833738705505,0,0.372136394476677,0.170112242501084,0.322106408267991,0,0,-0.191841930169743,0,0,0.1846965346606,0,0.0695052016201444,0,0,0,0,0,0.0695052016201444,0,-0.144809310779611,0,0,0,0,0.309919266601891,0.0695052016201444,0.727459388737294,0.0695052016201444,0,0,0,0.0460059230115026,0.217695209943381,0.0695052016201444,0,0,0,0,0,0,0.330085100175874,0.203385304406092,0,0,0,0,0,0,0,0,0.0175076980126226,0,0,0,0,0,0.131982301421889,0,0,0,0.129406115216345,0.315736099054757,0,0,-0.0483874695290201,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105655576629046,0.103471784730101,0,0,0,0,0,0,0,-0.205328096585946,0,0.129406115216345,0,0,0.0681532362374051,0,0,0,0.45191561636885,0,0.0217195798599962,0,0,0,0,0,0,0.114487331332247,0,0.345357685551273,0.0695052016201444,0,0,0,0,0,0,0,0.0347526008100722,0,0,0,-0.171167385674209,-0.0247755787802223,-0.0896406852440185,-0.138082353849097,0,0,-0.077668719332096,0,0,0,0,0,0,0.059678380944664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0695052016201444,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,0.458754104889948,0,0,0.131780405225788,0,0,0,0,0.00420128081266416,0,-0.10878645171629,-0.104030010882728,-0.0602288038780409,0,0,0,-0.0196329716723828,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0756516523160662,0,0.228974662664494,0,0,0,0,0,0,0,0,0,0,0.0647030576081725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0695052016201444,0.0647030576081725,0,0,0,0,0,0,-0.0340113632754165,0.129406115216345,0,0.129406115216345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102019141677744,0,0,0,0.0158884330074502,0,0,0,0,0,0,0.27133006685894,0,0.129406115216345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129406115216345,0,0,0,0.107292421170323,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223107991619886,0,0.0450294829863175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47966422036267,0,0,0,0,0.181337552003575,0,0,0,0,0,0,0,0.0288793934725147,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473848780448789,0,0,0.0554572444032979,0,0,0,0,0,0,0,0,0,0,0,0,0.0680859360662183,0,0,0,0,0,0,0,0,0,0,0.133607567720714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0808984984637763,0.169663013958599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.066153124086179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650423588289387,0,0,0,0,0,0,0,0,0,0,0,0,0.0350061352354965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0695052016201444,0,0.0347526008100722,0,0,0,0,0.091018804973191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00632957226185085,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0,0,0,0,0,0.0695052016201444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0633410726285773,0,0,0,0,0,0,0,0,0,0,0,0,0.129406115216345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0695052016201444,0,0,-0.00227678098556139,0,0,0,0,0,0,0,0.00671011821934375,0,0,0,0,0,0,0,0,0.182037609946382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0110128172925103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0329864715597891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0496641165513666,0,0,0,0,0,0,0,0,0,0,0.0347526008100722,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00355047456251761,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0147650750865859,0,0,0,0,0,0,0,0,0,0,-0.0064974907177351,0,0,0,0,0,0,0,0.0347526008100722,0,0,0,0,0,0,0,0,0,0,0.139708229007811,0,0,0.0272177331430284,0,0.021194638788503,-0.0596080921369958,0,0,0,0,0,-0.0220203204819844,0,0,0,0,0,0,0,0.091018804973191,0,0,0.0294289538956128,0,0,0.153774742446536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0298471712789256,0,0.24168924508018,-0.0517170029707416,0,0.122588878207299,0.0643974431502355,0.103248608574039,0.249991289849153,0.0731357312634068,0,0,-0.0455867798739544,0.0120180898603943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228974662664494,0.345357685551273,0,0.125178663783783,0.00185443126437113,0,0.319427358834434,0,0.309919266601891,0.406086140495236,0,0.091018804973191,0,0.392974230302278 | |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=38.18656 | |rna_weight_ug=38.18656 | ||
|sample_age=56 | |sample_age=56 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1548 | |sample_cell_catalog=RCB1548 | ||
|sample_cell_line=JHUEM-1 | |sample_cell_line=JHUEM-1 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.94483282887527e-250!GO:0043226;organelle;2.16175099239008e-201!GO:0043229;intracellular organelle;7.38772916005167e-201!GO:0005737;cytoplasm;9.39368484925104e-199!GO:0043231;intracellular membrane-bound organelle;2.92766261807108e-196!GO:0043227;membrane-bound organelle;3.85988896258389e-196!GO:0044422;organelle part;7.19027761489671e-159!GO:0044446;intracellular organelle part;2.0526293403389e-157!GO:0044444;cytoplasmic part;4.21712808219419e-147!GO:0032991;macromolecular complex;8.33532253414232e-96!GO:0030529;ribonucleoprotein complex;1.06407858213981e-87!GO:0005739;mitochondrion;9.7451024824473e-87!GO:0044237;cellular metabolic process;3.42834041043103e-85!GO:0044238;primary metabolic process;1.21262243556054e-81!GO:0043233;organelle lumen;2.69451042151246e-77!GO:0031974;membrane-enclosed lumen;2.69451042151246e-77!GO:0044428;nuclear part;3.43358763416217e-73!GO:0043170;macromolecule metabolic process;4.63784969016796e-71!GO:0003723;RNA binding;2.89632809309164e-68!GO:0005634;nucleus;1.48112114985381e-67!GO:0005515;protein binding;1.83426046596111e-62!GO:0031090;organelle membrane;1.9658859557325e-58!GO:0044429;mitochondrial part;2.64002724654244e-58!GO:0005840;ribosome;1.22708753569076e-55!GO:0031967;organelle envelope;2.46005923815896e-50!GO:0031975;envelope;6.98492049298847e-50!GO:0003735;structural constituent of ribosome;3.72016022112224e-48!GO:0006412;translation;1.02766436846826e-47!GO:0006396;RNA processing;2.62576686814437e-47!GO:0043234;protein complex;3.64308274731213e-47!GO:0009058;biosynthetic process;3.10343222050193e-46!GO:0015031;protein transport;4.60757290392541e-45!GO:0031981;nuclear lumen;5.01168908970205e-45!GO:0019538;protein metabolic process;1.93001863049723e-44!GO:0033036;macromolecule localization;3.86652512369534e-43!GO:0033279;ribosomal subunit;2.86242100066757e-42!GO:0016043;cellular component organization and biogenesis;8.37922984255765e-42!GO:0044249;cellular biosynthetic process;1.38198280163464e-41!GO:0008104;protein localization;5.21615314431832e-40!GO:0044267;cellular protein metabolic process;9.83440596794448e-40!GO:0044260;cellular macromolecule metabolic process;1.57871834285321e-39!GO:0045184;establishment of protein localization;3.52826385684648e-39!GO:0009059;macromolecule biosynthetic process;1.65873954492606e-38!GO:0043283;biopolymer metabolic process;1.91229573171883e-38!GO:0005740;mitochondrial envelope;5.33379468992412e-38!GO:0046907;intracellular transport;2.49077106391845e-37!GO:0043228;non-membrane-bound organelle;4.43089832699947e-37!GO:0043232;intracellular non-membrane-bound organelle;4.43089832699947e-37!GO:0019866;organelle inner membrane;4.65275346366107e-37!GO:0010467;gene expression;7.91120561025554e-36!GO:0016071;mRNA metabolic process;1.12672171664976e-35!GO:0005829;cytosol;2.17754787534522e-35!GO:0031966;mitochondrial membrane;3.21181321799478e-35!GO:0005743;mitochondrial inner membrane;6.08190176226369e-35!GO:0008380;RNA splicing;1.65597829257519e-33!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.0652519688782e-32!GO:0006996;organelle organization and biogenesis;4.03531387149376e-32!GO:0006397;mRNA processing;8.96935489104865e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.31108299655718e-29!GO:0006886;intracellular protein transport;4.31108299655718e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.39293615524425e-29!GO:0065003;macromolecular complex assembly;5.26364129483877e-28!GO:0006119;oxidative phosphorylation;5.90034219061557e-27!GO:0005654;nucleoplasm;3.61805877173756e-26!GO:0031980;mitochondrial lumen;7.91560337277608e-25!GO:0005759;mitochondrial matrix;7.91560337277608e-25!GO:0044455;mitochondrial membrane part;1.86190480562462e-24!GO:0005681;spliceosome;2.30769444682411e-24!GO:0022607;cellular component assembly;5.07783797371196e-24!GO:0051649;establishment of cellular localization;8.45702493967331e-24!GO:0051641;cellular localization;1.30158538923298e-23!GO:0000166;nucleotide binding;5.18253143899297e-23!GO:0012505;endomembrane system;7.00212830311747e-23!GO:0006259;DNA metabolic process;2.08089391379675e-22!GO:0016462;pyrophosphatase activity;6.86011965095363e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;7.70149150078092e-22!GO:0015935;small ribosomal subunit;8.05332285316994e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.02632186289338e-22!GO:0044445;cytosolic part;1.55371826398058e-21!GO:0015934;large ribosomal subunit;1.67210944565816e-21!GO:0044451;nucleoplasm part;3.15973022493418e-21!GO:0017111;nucleoside-triphosphatase activity;7.39430347886461e-21!GO:0051186;cofactor metabolic process;2.15319651392032e-20!GO:0007049;cell cycle;5.06820066381622e-20!GO:0005746;mitochondrial respiratory chain;5.69582740937127e-19!GO:0005730;nucleolus;5.74775312066968e-19!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.28067705704893e-19!GO:0006457;protein folding;1.22665953774476e-18!GO:0016874;ligase activity;1.39891742109154e-18!GO:0003676;nucleic acid binding;1.72234824995318e-18!GO:0050136;NADH dehydrogenase (quinone) activity;1.00729300243283e-17!GO:0003954;NADH dehydrogenase activity;1.00729300243283e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.00729300243283e-17!GO:0005783;endoplasmic reticulum;1.52178246681029e-17!GO:0044265;cellular macromolecule catabolic process;2.9918304174948e-17!GO:0005761;mitochondrial ribosome;8.1809999480954e-17!GO:0000313;organellar ribosome;8.1809999480954e-17!GO:0006512;ubiquitin cycle;9.40303228227506e-17!GO:0022618;protein-RNA complex assembly;1.00673601550017e-16!GO:0044248;cellular catabolic process;1.18646550921513e-16!GO:0006732;coenzyme metabolic process;1.93863375855432e-16!GO:0032553;ribonucleotide binding;2.98201465728638e-16!GO:0032555;purine ribonucleotide binding;2.98201465728638e-16!GO:0048770;pigment granule;4.62480067460924e-16!GO:0042470;melanosome;4.62480067460924e-16!GO:0005794;Golgi apparatus;5.92584281374635e-16!GO:0017076;purine nucleotide binding;6.84236195295684e-16!GO:0043285;biopolymer catabolic process;7.18029811079871e-16!GO:0042775;organelle ATP synthesis coupled electron transport;9.59963138765195e-16!GO:0042773;ATP synthesis coupled electron transport;9.59963138765195e-16!GO:0030964;NADH dehydrogenase complex (quinone);1.40933020204895e-15!GO:0045271;respiratory chain complex I;1.40933020204895e-15!GO:0005747;mitochondrial respiratory chain complex I;1.40933020204895e-15!GO:0016070;RNA metabolic process;1.41070026522063e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.45472671173685e-15!GO:0044432;endoplasmic reticulum part;2.43847932635803e-15!GO:0019941;modification-dependent protein catabolic process;2.95047858516925e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.95047858516925e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.99207336312025e-15!GO:0044257;cellular protein catabolic process;3.2454027418854e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.36013092336319e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.99140402070551e-15!GO:0006511;ubiquitin-dependent protein catabolic process;6.18044951898239e-15!GO:0009057;macromolecule catabolic process;6.45860218447305e-15!GO:0000278;mitotic cell cycle;1.00495820865602e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.06625853513178e-14!GO:0006974;response to DNA damage stimulus;1.35593221823947e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.40070963822313e-14!GO:0006605;protein targeting;1.47310514776094e-14!GO:0051082;unfolded protein binding;1.97519584931976e-14!GO:0022402;cell cycle process;2.82880396933881e-14!GO:0048193;Golgi vesicle transport;8.71186199660947e-14!GO:0008134;transcription factor binding;1.68046886024259e-13!GO:0005635;nuclear envelope;1.69010737102938e-13!GO:0016192;vesicle-mediated transport;1.75328223722677e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.40415803086017e-13!GO:0000375;RNA splicing, via transesterification reactions;4.40415803086017e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.40415803086017e-13!GO:0009055;electron carrier activity;6.0663029723662e-13!GO:0008135;translation factor activity, nucleic acid binding;6.26785087644824e-13!GO:0030163;protein catabolic process;6.54961293369162e-13!GO:0042254;ribosome biogenesis and assembly;6.74625590221079e-13!GO:0031965;nuclear membrane;7.33281310313121e-13!GO:0043412;biopolymer modification;2.36923037566147e-12!GO:0005524;ATP binding;3.673904254135e-12!GO:0007005;mitochondrion organization and biogenesis;4.2513470668136e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.2513470668136e-12!GO:0005789;endoplasmic reticulum membrane;5.8134460104766e-12!GO:0006281;DNA repair;6.04879047199505e-12!GO:0000087;M phase of mitotic cell cycle;7.26825837978426e-12!GO:0032559;adenyl ribonucleotide binding;8.30789850675571e-12!GO:0007067;mitosis;9.62816448711219e-12!GO:0016887;ATPase activity;1.78478163706803e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.01893283803332e-11!GO:0030554;adenyl nucleotide binding;2.20550439102532e-11!GO:0005694;chromosome;2.61099627025048e-11!GO:0042623;ATPase activity, coupled;3.1586801694244e-11!GO:0009259;ribonucleotide metabolic process;4.15294827336054e-11!GO:0016604;nuclear body;5.43140468194593e-11!GO:0051188;cofactor biosynthetic process;5.76845027351258e-11!GO:0044453;nuclear membrane part;5.94970912571045e-11!GO:0051301;cell division;7.56471773662154e-11!GO:0006399;tRNA metabolic process;8.1294129533799e-11!GO:0008565;protein transporter activity;9.29048669573369e-11!GO:0006163;purine nucleotide metabolic process;9.58942292436177e-11!GO:0006464;protein modification process;1.21977752242454e-10!GO:0003743;translation initiation factor activity;1.58916120285863e-10!GO:0006413;translational initiation;1.89277736338072e-10!GO:0015986;ATP synthesis coupled proton transport;2.40586277677638e-10!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.40586277677638e-10!GO:0009150;purine ribonucleotide metabolic process;3.17503603595822e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.32934942746192e-10!GO:0044427;chromosomal part;3.98866473897215e-10!GO:0009056;catabolic process;3.98866473897215e-10!GO:0022403;cell cycle phase;4.08107987796937e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.45090926560509e-10!GO:0006260;DNA replication;5.76859992470779e-10!GO:0006446;regulation of translational initiation;5.789732638115e-10!GO:0019787;small conjugating protein ligase activity;8.2478823465306e-10!GO:0009141;nucleoside triphosphate metabolic process;8.47090594623945e-10!GO:0008639;small protein conjugating enzyme activity;9.1442331746512e-10!GO:0006164;purine nucleotide biosynthetic process;1.06469698988763e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.10580245436714e-09!GO:0004842;ubiquitin-protein ligase activity;1.33452569117522e-09!GO:0009060;aerobic respiration;1.35894260920709e-09!GO:0009260;ribonucleotide biosynthetic process;1.58580764831914e-09!GO:0046034;ATP metabolic process;1.61237801452395e-09!GO:0065002;intracellular protein transport across a membrane;1.81409286605261e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.09926958919285e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.09926958919285e-09!GO:0006461;protein complex assembly;2.55358225352211e-09!GO:0012501;programmed cell death;3.04519068876647e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.448965526158e-09!GO:0016469;proton-transporting two-sector ATPase complex;3.96664585887685e-09!GO:0006754;ATP biosynthetic process;4.27572955103577e-09!GO:0006753;nucleoside phosphate metabolic process;4.27572955103577e-09!GO:0009142;nucleoside triphosphate biosynthetic process;4.38043293615473e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.38043293615473e-09!GO:0045333;cellular respiration;4.47017451019031e-09!GO:0004386;helicase activity;4.53779820064214e-09!GO:0006915;apoptosis;4.74333911297176e-09!GO:0019829;cation-transporting ATPase activity;4.8613376639601e-09!GO:0016491;oxidoreductase activity;5.91396071834185e-09!GO:0005643;nuclear pore;6.18277894762088e-09!GO:0016607;nuclear speck;6.19342665107107e-09!GO:0000279;M phase;7.2487736704064e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.30071119910587e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.30071119910587e-09!GO:0015078;hydrogen ion transmembrane transporter activity;8.41602849669308e-09!GO:0051276;chromosome organization and biogenesis;8.49114829881547e-09!GO:0006913;nucleocytoplasmic transport;9.30011611071137e-09!GO:0043687;post-translational protein modification;1.04366199663635e-08!GO:0009108;coenzyme biosynthetic process;1.10510869582951e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.43926091131218e-08!GO:0009719;response to endogenous stimulus;1.47665665275077e-08!GO:0015630;microtubule cytoskeleton;2.12532914445835e-08!GO:0051169;nuclear transport;2.12532914445835e-08!GO:0003712;transcription cofactor activity;2.13458730150076e-08!GO:0048475;coated membrane;2.27410591920462e-08!GO:0030117;membrane coat;2.27410591920462e-08!GO:0008026;ATP-dependent helicase activity;2.74302599993706e-08!GO:0016881;acid-amino acid ligase activity;3.51089036847257e-08!GO:0000074;regulation of progression through cell cycle;3.7170937153445e-08!GO:0006099;tricarboxylic acid cycle;3.91474231444968e-08!GO:0046356;acetyl-CoA catabolic process;3.91474231444968e-08!GO:0044431;Golgi apparatus part;4.04974470029476e-08!GO:0006364;rRNA processing;4.1165697832658e-08!GO:0051726;regulation of cell cycle;4.49982691128302e-08!GO:0008219;cell death;4.67313788931255e-08!GO:0016265;death;4.67313788931255e-08!GO:0005768;endosome;4.9064682524796e-08!GO:0003924;GTPase activity;4.99188564488596e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.06566682977163e-08!GO:0016072;rRNA metabolic process;6.09316126416706e-08!GO:0009117;nucleotide metabolic process;7.51952889452744e-08!GO:0006752;group transfer coenzyme metabolic process;7.93847482858084e-08!GO:0032446;protein modification by small protein conjugation;8.25664831340879e-08!GO:0006366;transcription from RNA polymerase II promoter;9.24812279397779e-08!GO:0006084;acetyl-CoA metabolic process;1.00120395813637e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.02341461887237e-07!GO:0005793;ER-Golgi intermediate compartment;1.11043632119234e-07!GO:0005525;GTP binding;1.43628368745498e-07!GO:0016567;protein ubiquitination;1.5117585277854e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.56809616537998e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.57435081599943e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.57435081599943e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.57435081599943e-07!GO:0005667;transcription factor complex;1.62238491735079e-07!GO:0050657;nucleic acid transport;1.81014089788918e-07!GO:0051236;establishment of RNA localization;1.81014089788918e-07!GO:0050658;RNA transport;1.81014089788918e-07!GO:0006403;RNA localization;1.81537949430979e-07!GO:0016787;hydrolase activity;1.81914930574165e-07!GO:0030120;vesicle coat;2.13593177439528e-07!GO:0030662;coated vesicle membrane;2.13593177439528e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.37278384880029e-07!GO:0051187;cofactor catabolic process;2.58429017711531e-07!GO:0006839;mitochondrial transport;2.64990992707249e-07!GO:0043038;amino acid activation;2.86503859513199e-07!GO:0006418;tRNA aminoacylation for protein translation;2.86503859513199e-07!GO:0043039;tRNA aminoacylation;2.86503859513199e-07!GO:0045259;proton-transporting ATP synthase complex;3.13236438562587e-07!GO:0016740;transferase activity;3.38871387929547e-07!GO:0017038;protein import;3.4966889209984e-07!GO:0009109;coenzyme catabolic process;3.62418361804781e-07!GO:0046930;pore complex;3.75966456535053e-07!GO:0006323;DNA packaging;3.86179071730478e-07!GO:0006091;generation of precursor metabolites and energy;8.85773222061087e-07!GO:0043623;cellular protein complex assembly;2.00481888912448e-06!GO:0016779;nucleotidyltransferase activity;2.17395095104097e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.98110056467726e-06!GO:0000139;Golgi membrane;3.49384559556797e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.99309784805772e-06!GO:0032561;guanyl ribonucleotide binding;4.06157187770688e-06!GO:0019001;guanyl nucleotide binding;4.06157187770688e-06!GO:0000245;spliceosome assembly;4.11606203846312e-06!GO:0000785;chromatin;4.16450329151141e-06!GO:0051028;mRNA transport;4.70537804251519e-06!GO:0003697;single-stranded DNA binding;5.43580363393135e-06!GO:0005762;mitochondrial large ribosomal subunit;5.7680829084422e-06!GO:0000315;organellar large ribosomal subunit;5.7680829084422e-06!GO:0007264;small GTPase mediated signal transduction;6.33397321228998e-06!GO:0008654;phospholipid biosynthetic process;6.50157822581332e-06!GO:0065004;protein-DNA complex assembly;6.5472570671655e-06!GO:0043566;structure-specific DNA binding;6.70711205249253e-06!GO:0006613;cotranslational protein targeting to membrane;7.33537922399881e-06!GO:0000314;organellar small ribosomal subunit;7.41486755495896e-06!GO:0005763;mitochondrial small ribosomal subunit;7.41486755495896e-06!GO:0016568;chromatin modification;8.08055767013299e-06!GO:0000151;ubiquitin ligase complex;9.89625149500803e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.08638488486925e-05!GO:0051246;regulation of protein metabolic process;1.28112228858229e-05!GO:0016126;sterol biosynthetic process;1.32377660550254e-05!GO:0045454;cell redox homeostasis;1.5748558823459e-05!GO:0006793;phosphorus metabolic process;1.98487737080124e-05!GO:0006796;phosphate metabolic process;1.98487737080124e-05!GO:0031988;membrane-bound vesicle;2.23089708768475e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.40436889204898e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.50230252724401e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.51200985985209e-05!GO:0005819;spindle;2.57028569169071e-05!GO:0003724;RNA helicase activity;2.80529422725734e-05!GO:0043069;negative regulation of programmed cell death;3.48536305425676e-05!GO:0015992;proton transport;3.58704221781619e-05!GO:0005773;vacuole;3.65390076595118e-05!GO:0044440;endosomal part;3.90474105600256e-05!GO:0010008;endosome membrane;3.90474105600256e-05!GO:0006333;chromatin assembly or disassembly;4.0003567063904e-05!GO:0030118;clathrin coat;4.14257216670772e-05!GO:0016853;isomerase activity;4.48071971621447e-05!GO:0043021;ribonucleoprotein binding;4.6149374549098e-05!GO:0004298;threonine endopeptidase activity;4.70960816039298e-05!GO:0005813;centrosome;4.73351938111899e-05!GO:0006916;anti-apoptosis;4.93816677443598e-05!GO:0006818;hydrogen transport;5.5707906254434e-05!GO:0031982;vesicle;6.01016779457189e-05!GO:0005815;microtubule organizing center;6.08375139167416e-05!GO:0043067;regulation of programmed cell death;6.40394761201214e-05!GO:0043066;negative regulation of apoptosis;6.83956922483322e-05!GO:0042981;regulation of apoptosis;7.10831571738969e-05!GO:0003899;DNA-directed RNA polymerase activity;7.19731584832585e-05!GO:0006626;protein targeting to mitochondrion;8.16847415648272e-05!GO:0009165;nucleotide biosynthetic process;8.38816956984048e-05!GO:0031410;cytoplasmic vesicle;8.77911049070253e-05!GO:0048471;perinuclear region of cytoplasm;8.8430035051739e-05!GO:0005798;Golgi-associated vesicle;9.03238199071156e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000102588061231928!GO:0051427;hormone receptor binding;0.000107043018359904!GO:0016310;phosphorylation;0.000109435830751579!GO:0000775;chromosome, pericentric region;0.000111550617631379!GO:0003713;transcription coactivator activity;0.000119897308544363!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000123612591709784!GO:0006261;DNA-dependent DNA replication;0.000124371974252639!GO:0007051;spindle organization and biogenesis;0.000134877833980958!GO:0031252;leading edge;0.000136114046833176!GO:0006695;cholesterol biosynthetic process;0.000145128049330647!GO:0006082;organic acid metabolic process;0.000160575687668737!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000160575687668737!GO:0007010;cytoskeleton organization and biogenesis;0.000163626295664742!GO:0008033;tRNA processing;0.000172285132332591!GO:0050794;regulation of cellular process;0.000174363554371193!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000175200902375678!GO:0005048;signal sequence binding;0.000182023362571163!GO:0016363;nuclear matrix;0.00018315672739933!GO:0019752;carboxylic acid metabolic process;0.000183875192948966!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000183913806212821!GO:0005770;late endosome;0.000194467719455126!GO:0051168;nuclear export;0.000216875549693274!GO:0035257;nuclear hormone receptor binding;0.000216875549693274!GO:0043681;protein import into mitochondrion;0.000236275681032518!GO:0051170;nuclear import;0.00023960512657253!GO:0000323;lytic vacuole;0.000249674946285388!GO:0005764;lysosome;0.000249674946285388!GO:0006612;protein targeting to membrane;0.000260841344755478!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000261581959132841!GO:0015399;primary active transmembrane transporter activity;0.000261581959132841!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000286786164064776!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000327457750574111!GO:0007006;mitochondrial membrane organization and biogenesis;0.000363680580559631!GO:0016564;transcription repressor activity;0.000363921797697784!GO:0005885;Arp2/3 protein complex;0.000364362013074672!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000366314593136472!GO:0005905;coated pit;0.00040531743303988!GO:0008250;oligosaccharyl transferase complex;0.000415005731210136!GO:0030119;AP-type membrane coat adaptor complex;0.000426752806770661!GO:0005788;endoplasmic reticulum lumen;0.000445664389259779!GO:0016563;transcription activator activity;0.000446527853067095!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000447101350658561!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000449998816147094!GO:0033116;ER-Golgi intermediate compartment membrane;0.00045167252822985!GO:0008186;RNA-dependent ATPase activity;0.000454462967156063!GO:0048523;negative regulation of cellular process;0.000458991583174975!GO:0005874;microtubule;0.000469936213238928!GO:0006606;protein import into nucleus;0.000477075841039081!GO:0030867;rough endoplasmic reticulum membrane;0.000479821587338736!GO:0004576;oligosaccharyl transferase activity;0.000495738774786469!GO:0031324;negative regulation of cellular metabolic process;0.000502008909801965!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000572352496215609!GO:0031968;organelle outer membrane;0.000576803196695921!GO:0008092;cytoskeletal protein binding;0.0005890299952915!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000624327067545129!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000624327067545129!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000624327067545129!GO:0006383;transcription from RNA polymerase III promoter;0.000631073439140785!GO:0051920;peroxiredoxin activity;0.000631158051549373!GO:0030658;transport vesicle membrane;0.000637661426428887!GO:0016859;cis-trans isomerase activity;0.000679231936337288!GO:0006401;RNA catabolic process;0.00069221132028996!GO:0009892;negative regulation of metabolic process;0.000702887764066211!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000722585021590006!GO:0030131;clathrin adaptor complex;0.000756713510235488!GO:0051329;interphase of mitotic cell cycle;0.000785293935951971!GO:0005769;early endosome;0.000835747402594486!GO:0019867;outer membrane;0.000835747402594486!GO:0016044;membrane organization and biogenesis;0.000866622674199283!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000866622674199283!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000940975344321501!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00100969580905875!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00100969580905875!GO:0005741;mitochondrial outer membrane;0.00101935818097218!GO:0022890;inorganic cation transmembrane transporter activity;0.0010218385661136!GO:0003714;transcription corepressor activity;0.00104435988020044!GO:0030660;Golgi-associated vesicle membrane;0.00108420669981571!GO:0003729;mRNA binding;0.00111984275121823!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00113552614914023!GO:0004004;ATP-dependent RNA helicase activity;0.00123917078586793!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00126681308851683!GO:0006520;amino acid metabolic process;0.00130801652390301!GO:0051789;response to protein stimulus;0.00130913151510488!GO:0006986;response to unfolded protein;0.00130913151510488!GO:0006414;translational elongation;0.00133560862043809!GO:0008610;lipid biosynthetic process;0.00133984440818079!GO:0046483;heterocycle metabolic process;0.00133984440818079!GO:0006402;mRNA catabolic process;0.00134901475792345!GO:0000776;kinetochore;0.00135715372467288!GO:0044262;cellular carbohydrate metabolic process;0.00137391313553696!GO:0046489;phosphoinositide biosynthetic process;0.00140833230843754!GO:0048500;signal recognition particle;0.00141234800399173!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0014629022405224!GO:0005791;rough endoplasmic reticulum;0.00148835689974509!GO:0018196;peptidyl-asparagine modification;0.00168107971153634!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00168107971153634!GO:0019899;enzyme binding;0.00177648254185776!GO:0035258;steroid hormone receptor binding;0.00188881086394788!GO:0050662;coenzyme binding;0.00189123610949225!GO:0046474;glycerophospholipid biosynthetic process;0.00193706457918371!GO:0051325;interphase;0.00194476681882769!GO:0016408;C-acyltransferase activity;0.00196068187374315!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00198080312258557!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00205782564081077!GO:0042802;identical protein binding;0.00217893281946985!GO:0051540;metal cluster binding;0.00221384714174839!GO:0051536;iron-sulfur cluster binding;0.00221384714174839!GO:0006302;double-strand break repair;0.00225923564904214!GO:0008637;apoptotic mitochondrial changes;0.00232494355713024!GO:0003684;damaged DNA binding;0.00233803715044646!GO:0045786;negative regulation of progression through cell cycle;0.0023442428524699!GO:0006334;nucleosome assembly;0.0025383599171043!GO:0030880;RNA polymerase complex;0.00265996458319835!GO:0005758;mitochondrial intermembrane space;0.00271309873860552!GO:0031072;heat shock protein binding;0.00273163738839972!GO:0019843;rRNA binding;0.00278314354642747!GO:0005657;replication fork;0.00281932839472657!GO:0003690;double-stranded DNA binding;0.00282927619482488!GO:0007017;microtubule-based process;0.00289796815401222!GO:0030176;integral to endoplasmic reticulum membrane;0.00289985875266929!GO:0046467;membrane lipid biosynthetic process;0.002910635749987!GO:0008094;DNA-dependent ATPase activity;0.00291070702412381!GO:0051252;regulation of RNA metabolic process;0.00296751232483208!GO:0043492;ATPase activity, coupled to movement of substances;0.00305457653196074!GO:0005684;U2-dependent spliceosome;0.00314033937458757!GO:0000059;protein import into nucleus, docking;0.00316706700674478!GO:0006352;transcription initiation;0.00323949029490048!GO:0031497;chromatin assembly;0.00337261740808538!GO:0008312;7S RNA binding;0.00348930298198048!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00364732340907602!GO:0045047;protein targeting to ER;0.00364732340907602!GO:0044452;nucleolar part;0.00365015761538304!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00369669278034682!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00375753116193715!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00376916015943831!GO:0051052;regulation of DNA metabolic process;0.00379693671658727!GO:0048519;negative regulation of biological process;0.00379693671658727!GO:0030133;transport vesicle;0.00386069489734433!GO:0005777;peroxisome;0.0039758270249236!GO:0042579;microbody;0.0039758270249236!GO:0048037;cofactor binding;0.00410408534552897!GO:0008632;apoptotic program;0.00415810398934111!GO:0048487;beta-tubulin binding;0.00417117601288716!GO:0016251;general RNA polymerase II transcription factor activity;0.00421214893048136!GO:0005637;nuclear inner membrane;0.00427104170060383!GO:0000075;cell cycle checkpoint;0.00430010972623354!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00433857275093066!GO:0016407;acetyltransferase activity;0.00465290301706556!GO:0006778;porphyrin metabolic process;0.00471517738872242!GO:0033013;tetrapyrrole metabolic process;0.00471517738872242!GO:0030036;actin cytoskeleton organization and biogenesis;0.00472291508312292!GO:0006979;response to oxidative stress;0.00494838298493342!GO:0051087;chaperone binding;0.00494838298493342!GO:0006595;polyamine metabolic process;0.00511726415725292!GO:0008139;nuclear localization sequence binding;0.0053988475770871!GO:0030125;clathrin vesicle coat;0.0053988475770871!GO:0030665;clathrin coated vesicle membrane;0.0053988475770871!GO:0016197;endosome transport;0.00556948135126104!GO:0006891;intra-Golgi vesicle-mediated transport;0.00559404920545039!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00575224204040448!GO:0000428;DNA-directed RNA polymerase complex;0.00575224204040448!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00591648898759332!GO:0065009;regulation of a molecular function;0.00600517373532943!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00601543105911686!GO:0015002;heme-copper terminal oxidase activity;0.00601543105911686!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00601543105911686!GO:0004129;cytochrome-c oxidase activity;0.00601543105911686!GO:0006672;ceramide metabolic process;0.00686449872320523!GO:0003682;chromatin binding;0.00693741843649668!GO:0015631;tubulin binding;0.00709078545674762!GO:0043488;regulation of mRNA stability;0.00721855055719943!GO:0043487;regulation of RNA stability;0.00721855055719943!GO:0016481;negative regulation of transcription;0.00723072277187835!GO:0045045;secretory pathway;0.00746191481651183!GO:0016272;prefoldin complex;0.00758194537233087!GO:0030132;clathrin coat of coated pit;0.00764622728598298!GO:0030521;androgen receptor signaling pathway;0.00768411289275922!GO:0007088;regulation of mitosis;0.00768411289275922!GO:0030663;COPI coated vesicle membrane;0.00789847570956492!GO:0030126;COPI vesicle coat;0.00789847570956492!GO:0005869;dynactin complex;0.00796938818641109!GO:0043284;biopolymer biosynthetic process;0.00799150660603737!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00799655535167961!GO:0003711;transcription elongation regulator activity;0.00802480462132186!GO:0019222;regulation of metabolic process;0.00815167227612327!GO:0003678;DNA helicase activity;0.00820419901216397!GO:0008180;signalosome;0.00835555230806378!GO:0006749;glutathione metabolic process;0.0084711264915019!GO:0000339;RNA cap binding;0.00860896438206948!GO:0050681;androgen receptor binding;0.00881674712059022!GO:0031970;organelle envelope lumen;0.00891880727636897!GO:0030384;phosphoinositide metabolic process;0.00895318518286278!GO:0031124;mRNA 3'-end processing;0.00898013392211163!GO:0006506;GPI anchor biosynthetic process;0.00928344036526148!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00939512517924133!GO:0006779;porphyrin biosynthetic process;0.00939512517924133!GO:0033014;tetrapyrrole biosynthetic process;0.00939512517924133!GO:0043022;ribosome binding;0.00951432059155883!GO:0046519;sphingoid metabolic process;0.00965155894375241!GO:0006289;nucleotide-excision repair;0.0100813471255588!GO:0030134;ER to Golgi transport vesicle;0.0104004419029468!GO:0017166;vinculin binding;0.010686337408537!GO:0001836;release of cytochrome c from mitochondria;0.0107195360619101!GO:0005832;chaperonin-containing T-complex;0.0110931327108759!GO:0007052;mitotic spindle organization and biogenesis;0.0114265666955954!GO:0008287;protein serine/threonine phosphatase complex;0.0114984607929155!GO:0006118;electron transport;0.0119659116717604!GO:0030127;COPII vesicle coat;0.0119980890121798!GO:0012507;ER to Golgi transport vesicle membrane;0.0119980890121798!GO:0006497;protein amino acid lipidation;0.0123756748155241!GO:0006650;glycerophospholipid metabolic process;0.0128921848285332!GO:0006505;GPI anchor metabolic process;0.0128921848285332!GO:0006405;RNA export from nucleus;0.0128921848285332!GO:0000096;sulfur amino acid metabolic process;0.0131071263010686!GO:0006635;fatty acid beta-oxidation;0.0131466484334988!GO:0051539;4 iron, 4 sulfur cluster binding;0.0137450935455552!GO:0030659;cytoplasmic vesicle membrane;0.0141590447603073!GO:0042158;lipoprotein biosynthetic process;0.0141590447603073!GO:0008652;amino acid biosynthetic process;0.0143136002551472!GO:0006611;protein export from nucleus;0.0143401531242821!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0146014736182428!GO:0008168;methyltransferase activity;0.0146120620810992!GO:0016741;transferase activity, transferring one-carbon groups;0.0147929050987876!GO:0031901;early endosome membrane;0.0154972783755111!GO:0051287;NAD binding;0.0157473072078533!GO:0042168;heme metabolic process;0.0159772954484759!GO:0004448;isocitrate dehydrogenase activity;0.0163391336247224!GO:0005669;transcription factor TFIID complex;0.016851537455617!GO:0008234;cysteine-type peptidase activity;0.016851537455617!GO:0000209;protein polyubiquitination;0.0175375514522566!GO:0006378;mRNA polyadenylation;0.0179222860482598!GO:0030029;actin filament-based process;0.0183027643075647!GO:0006740;NADPH regeneration;0.0185149106277502!GO:0006098;pentose-phosphate shunt;0.0185149106277502!GO:0030518;steroid hormone receptor signaling pathway;0.01878568443089!GO:0050789;regulation of biological process;0.0191184192783981!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0192355051967399!GO:0006519;amino acid and derivative metabolic process;0.0210134261537619!GO:0043414;biopolymer methylation;0.0215655751428658!GO:0016125;sterol metabolic process;0.0218826306184067!GO:0000049;tRNA binding;0.0220708702772542!GO:0004532;exoribonuclease activity;0.0222913537340779!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0222913537340779!GO:0006643;membrane lipid metabolic process;0.0223020391838431!GO:0007265;Ras protein signal transduction;0.0225704307699025!GO:0030027;lamellipodium;0.0232120551948759!GO:0032508;DNA duplex unwinding;0.0235331264479414!GO:0032392;DNA geometric change;0.0235331264479414!GO:0046983;protein dimerization activity;0.0236305627895636!GO:0000159;protein phosphatase type 2A complex;0.024272994813299!GO:0006144;purine base metabolic process;0.0246387255983873!GO:0030041;actin filament polymerization;0.0248160397045114!GO:0031529;ruffle organization and biogenesis;0.0250710857227651!GO:0008320;protein transmembrane transporter activity;0.0252069292529132!GO:0008299;isoprenoid biosynthetic process;0.0253205883972448!GO:0022884;macromolecule transmembrane transporter activity;0.0253562559335214!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0253562559335214!GO:0009451;RNA modification;0.0261082412028537!GO:0008022;protein C-terminus binding;0.0261541646106596!GO:0004674;protein serine/threonine kinase activity;0.0263049972004237!GO:0008601;protein phosphatase type 2A regulator activity;0.0267518161736915!GO:0008538;proteasome activator activity;0.0269090280286789!GO:0007059;chromosome segregation;0.0277802847433283!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0284912299641757!GO:0022406;membrane docking;0.0288979956159087!GO:0048278;vesicle docking;0.0288979956159087!GO:0043433;negative regulation of transcription factor activity;0.0291059426384866!GO:0000792;heterochromatin;0.0291059426384866!GO:0033673;negative regulation of kinase activity;0.0291059426384866!GO:0006469;negative regulation of protein kinase activity;0.0291059426384866!GO:0044433;cytoplasmic vesicle part;0.0292743043078499!GO:0030833;regulation of actin filament polymerization;0.0292743043078499!GO:0030137;COPI-coated vesicle;0.029795987797507!GO:0001726;ruffle;0.0304365104906044!GO:0007040;lysosome organization and biogenesis;0.030923078787637!GO:0003746;translation elongation factor activity;0.0310473206705824!GO:0050178;phenylpyruvate tautomerase activity;0.0310950200999142!GO:0051348;negative regulation of transferase activity;0.0311976815233905!GO:0007034;vacuolar transport;0.0316474990031754!GO:0004527;exonuclease activity;0.0316612005173829!GO:0006783;heme biosynthetic process;0.0317748792445389!GO:0007021;tubulin folding;0.0319161026951222!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0320237074111193!GO:0004722;protein serine/threonine phosphatase activity;0.0328414154664201!GO:0004860;protein kinase inhibitor activity;0.0337334641900233!GO:0007033;vacuole organization and biogenesis;0.0337827688670608!GO:0005784;translocon complex;0.0339700890108749!GO:0045941;positive regulation of transcription;0.0341276810110621!GO:0006733;oxidoreduction coenzyme metabolic process;0.0342175591291009!GO:0051128;regulation of cellular component organization and biogenesis;0.0343753853822442!GO:0008097;5S rRNA binding;0.034657377461367!GO:0006268;DNA unwinding during replication;0.0349138120016453!GO:0006730;one-carbon compound metabolic process;0.0349270652877879!GO:0006338;chromatin remodeling;0.0349270652877879!GO:0006767;water-soluble vitamin metabolic process;0.0350057431191248!GO:0006284;base-excision repair;0.0351935815540024!GO:0051098;regulation of binding;0.0353857888818476!GO:0031371;ubiquitin conjugating enzyme complex;0.035436367633132!GO:0031902;late endosome membrane;0.0355335375729342!GO:0007093;mitotic cell cycle checkpoint;0.036075051051078!GO:0006984;ER-nuclear signaling pathway;0.0364335935686085!GO:0004177;aminopeptidase activity;0.0367237594184205!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0370660422248359!GO:0016584;nucleosome positioning;0.0374655964573444!GO:0030913;paranodal junction assembly;0.0381463500410094!GO:0032288;myelin formation;0.0381463500410094!GO:0007032;endosome organization and biogenesis;0.0385080650170074!GO:0042769;DNA damage response, detection of DNA damage;0.038608934486273!GO:0006376;mRNA splice site selection;0.0388956708003922!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0388956708003922!GO:0006904;vesicle docking during exocytosis;0.0389352990806942!GO:0016791;phosphoric monoester hydrolase activity;0.0390571911219887!GO:0005876;spindle microtubule;0.0391216372365698!GO:0008426;protein kinase C inhibitor activity;0.0392177548615494!GO:0030508;thiol-disulfide exchange intermediate activity;0.0392915237497288!GO:0006807;nitrogen compound metabolic process;0.0393136704577168!GO:0042026;protein refolding;0.0394992620428724!GO:0004518;nuclease activity;0.0395081515186569!GO:0005774;vacuolar membrane;0.0395772025029365!GO:0042393;histone binding;0.0404879408556291!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0404879408556291!GO:0010257;NADH dehydrogenase complex assembly;0.0404879408556291!GO:0033108;mitochondrial respiratory chain complex assembly;0.0404879408556291!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.040580445380871!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.040580445380871!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.040580445380871!GO:0045039;protein import into mitochondrial inner membrane;0.040580445380871!GO:0006607;NLS-bearing substrate import into nucleus;0.040991878538688!GO:0012506;vesicle membrane;0.0412617762542667!GO:0005802;trans-Golgi network;0.0421078555474482!GO:0045893;positive regulation of transcription, DNA-dependent;0.0422593537008867!GO:0007243;protein kinase cascade;0.0423853141020126!GO:0006644;phospholipid metabolic process;0.0427183849653782!GO:0030503;regulation of cell redox homeostasis;0.0427407345697167!GO:0019834;phospholipase A2 inhibitor activity;0.0429265972920877!GO:0000738;DNA catabolic process, exonucleolytic;0.0436508152794253!GO:0000086;G2/M transition of mitotic cell cycle;0.0436512175181889!GO:0016653;oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor;0.0437050221107876!GO:0031625;ubiquitin protein ligase binding;0.0438466350969022!GO:0000082;G1/S transition of mitotic cell cycle;0.044031744621704!GO:0006360;transcription from RNA polymerase I promoter;0.0441117819366501!GO:0044438;microbody part;0.0441117819366501!GO:0044439;peroxisomal part;0.0441117819366501!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0444248117687215!GO:0031123;RNA 3'-end processing;0.0449432783606868!GO:0005938;cell cortex;0.0454225492092043!GO:0006892;post-Golgi vesicle-mediated transport;0.0454225492092043!GO:0003756;protein disulfide isomerase activity;0.0461985969494936!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0461985969494936!GO:0004300;enoyl-CoA hydratase activity;0.0466322874186742!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0469243741925053!GO:0004003;ATP-dependent DNA helicase activity;0.0469243741925053!GO:0005754;mitochondrial proton-transporting ATP synthase, catalytic core;0.0469243741925053!GO:0000275;mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);0.0469243741925053!GO:0045267;proton-transporting ATP synthase, catalytic core;0.0469243741925053!GO:0006275;regulation of DNA replication;0.0469895848402589!GO:0030911;TPR domain binding;0.0471037407975362!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0482562887136007!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0483780149238647!GO:0008361;regulation of cell size;0.0484948325484686!GO:0032259;methylation;0.0485897441708834!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0492786405108451!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0493221827773653!GO:0050811;GABA receptor binding;0.0493221827773653!GO:0006541;glutamine metabolic process;0.0493221827773653!GO:0006007;glucose catabolic process;0.0496864714800215!GO:0005652;nuclear lamina;0.0499153966597414 | |||
|sample_id=10643 | |sample_id=10643 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=uterus | |sample_tissue=uterus | ||
|top_motifs=FOXQ1:2.13131983523;SNAI1..3:2.07657528751;ZEB1:1.95518164129;TEF:1.83745743312;ESRRA:1.63403163761;NKX2-3_NKX2-5:1.58742644239;T:1.27713329199;LMO2:1.13516868517;ONECUT1,2:1.13363280438;NR5A1,2:1.09641475847;RFX2..5_RFXANK_RFXAP:1.02026882141;XCPE1{core}:0.910098734991;PAX1,9:0.892164729661;SP1:0.890808759577;TEAD1:0.841689261752;CDC5L:0.804054219868;HOX{A6,A7,B6,B7}:0.794472280534;HOX{A5,B5}:0.794455314793;MYOD1:0.792190615624;ARID5B:0.789980712968;NKX2-1,4:0.787504148864;UFEwm:0.764245899515;HAND1,2:0.7139544852;FOX{I1,J2}:0.712632729556;ZBTB16:0.668587349214;NFY{A,B,C}:0.658300859907;NR6A1:0.649172770334;AIRE:0.611155831529;STAT5{A,B}:0.607021242685;LHX3,4:0.570248268373;NRF1:0.530028644009;PAX5:0.464642088202;TP53:0.424709550115;POU3F1..4:0.417428378262;ESR1:0.400927028496;SOX17:0.399687727423;ELK1,4_GABP{A,B1}:0.398617777651;VSX1,2:0.392544807908;FOXM1:0.367956024493;HSF1,2:0.365013089718;FOXD3:0.333965217844;IKZF1:0.329965607159;HMX1:0.302530889803;TBX4,5:0.280306780145;GFI1B:0.25721003773;TFAP4:0.253759985607;HNF4A_NR2F1,2:0.249394641747;NANOG:0.242653124564;PAX4:0.234740505571;HOX{A4,D4}:0.231222029488;POU1F1:0.219590002818;SOX{8,9,10}:0.179871850118;OCT4_SOX2{dimer}:0.1594756356;PDX1:0.15911265024;RXRA_VDR{dimer}:0.129956882848;AR:0.0904557598602;IKZF2:0.0893473733751;MTF1:0.0845842695334;YY1:0.0702359305458;E2F1..5:0.0667828304799;PBX1:0.0667471515963;ATF6:0.0614750130847;RBPJ:0.0529167343287;ZIC1..3:0.0483080022811;ZNF143:0.00670201690694;HNF1A:-0.00753719237641;NKX2-2,8:-0.0168640674652;CDX1,2,4:-0.0514412169989;TFCP2:-0.0520183187155;SPZ1:-0.0561382971251;ZNF148:-0.0590689854755;NKX3-2:-0.0600735978052;RFX1:-0.0619477130445;PPARG:-0.0764157208419;FOXA2:-0.0857045950728;ZNF384:-0.0938054630239;PITX1..3:-0.105635812191;NFIX:-0.117135583671;FOS_FOS{B,L1}_JUN{B,D}:-0.120601601731;NR3C1:-0.12292894152;MYB:-0.128851506261;POU6F1:-0.129534706145;SOX5:-0.146262216426;FOXL1:-0.155754431009;ALX4:-0.159008225329;LEF1_TCF7_TCF7L1,2:-0.179889122613;SOX2:-0.181984545286;TOPORS:-0.197385792401;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.20689932639;FOX{F1,F2,J1}:-0.225994762271;BACH2:-0.227354989829;KLF4:-0.230090433798;POU2F1..3:-0.232483654268;PRRX1,2:-0.243045533747;GZF1:-0.268090672933;GATA6:-0.275394803107;HIC1:-0.299139967612;ZNF423:-0.30020173611;ALX1:-0.303173139471;REST:-0.310253043776;ZFP161:-0.313974162978;FOSL2:-0.316943069247;ATF5_CREB3:-0.321052636761;NFE2:-0.321767521676;EVI1:-0.324812200005;NFKB1_REL_RELA:-0.327028344491;TBP:-0.349124919392;HBP1_HMGB_SSRP1_UBTF:-0.350200564882;ZBTB6:-0.365939395299;GFI1:-0.368853389673;bHLH_family:-0.372770589628;TFAP2B:-0.381340605459;CRX:-0.392367979086;TFDP1:-0.401365599889;HOXA9_MEIS1:-0.409138230121;FOXN1:-0.417466173577;NKX3-1:-0.419573550944;PAX8:-0.437814879388;PAX2:-0.441370892981;NKX6-1,2:-0.450286469987;BPTF:-0.473056861368;TAL1_TCF{3,4,12}:-0.478807942398;TLX1..3_NFIC{dimer}:-0.490654131839;SPI1:-0.504333514053;CUX2:-0.50495743443;HLF:-0.512789162094;NFIL3:-0.522602523317;IRF7:-0.52519714489;FOX{D1,D2}:-0.532552508732;SRF:-0.532921159317;MEF2{A,B,C,D}:-0.549133646413;SPIB:-0.551323421036;JUN:-0.553221862497;EN1,2:-0.559023378313;DBP:-0.566371084915;NFE2L1:-0.574881717491;NHLH1,2:-0.577624478422;ETS1,2:-0.577764293498;PAX3,7:-0.604093755349;GTF2A1,2:-0.609765689129;EP300:-0.613097320469;TFAP2{A,C}:-0.624996301232;RORA:-0.625208772034;ATF4:-0.633643633429;ATF2:-0.633656013939;ELF1,2,4:-0.661142463979;NFE2L2:-0.679034154911;GCM1,2:-0.688390577911;SREBF1,2:-0.69046237666;CEBPA,B_DDIT3:-0.706998741229;GTF2I:-0.723406422418;MYBL2:-0.739082906245;DMAP1_NCOR{1,2}_SMARC:-0.754089226765;MAZ:-0.755642228357;MED-1{core}:-0.768549853252;RUNX1..3:-0.771913332564;NR1H4:-0.783526333917;STAT2,4,6:-0.785677224079;AHR_ARNT_ARNT2:-0.796401915527;GATA4:-0.80274966587;EBF1:-0.808098634282;HES1:-0.809797355968;HMGA1,2:-0.815202001175;PRDM1:-0.832882548157;FOXP1:-0.842857768706;EGR1..3:-0.856437510182;FOXO1,3,4:-0.85938658444;FOXP3:-0.892541058419;CREB1:-0.909438539379;XBP1:-0.936699249054;TGIF1:-0.946703679197;RREB1:-0.950274579527;IRF1,2:-0.963705010704;MYFfamily:-0.978390190358;BREu{core}:-1.02359398242;TLX2:-1.05203923087;ADNP_IRX_SIX_ZHX:-1.0675321338;MZF1:-1.09319218703;PATZ1:-1.09601772018;MTE{core}:-1.10483033036;POU5F1:-1.11801676495;STAT1,3:-1.15443869038;HIF1A:-1.18939277722;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.21635282236;PAX6:-1.21778282775;MAFB:-1.23452472598;ZNF238:-1.30974097725;NANOG{mouse}:-1.38849479864;RXR{A,B,G}:-1.43948850088;NFATC1..3:-1.45460559358;SMAD1..7,9:-1.49244330549;GLI1..3:-1.57507411941 | |top_motifs=FOXQ1:2.13131983523;SNAI1..3:2.07657528751;ZEB1:1.95518164129;TEF:1.83745743312;ESRRA:1.63403163761;NKX2-3_NKX2-5:1.58742644239;T:1.27713329199;LMO2:1.13516868517;ONECUT1,2:1.13363280438;NR5A1,2:1.09641475847;RFX2..5_RFXANK_RFXAP:1.02026882141;XCPE1{core}:0.910098734991;PAX1,9:0.892164729661;SP1:0.890808759577;TEAD1:0.841689261752;CDC5L:0.804054219868;HOX{A6,A7,B6,B7}:0.794472280534;HOX{A5,B5}:0.794455314793;MYOD1:0.792190615624;ARID5B:0.789980712968;NKX2-1,4:0.787504148864;UFEwm:0.764245899515;HAND1,2:0.7139544852;FOX{I1,J2}:0.712632729556;ZBTB16:0.668587349214;NFY{A,B,C}:0.658300859907;NR6A1:0.649172770334;AIRE:0.611155831529;STAT5{A,B}:0.607021242685;LHX3,4:0.570248268373;NRF1:0.530028644009;PAX5:0.464642088202;TP53:0.424709550115;POU3F1..4:0.417428378262;ESR1:0.400927028496;SOX17:0.399687727423;ELK1,4_GABP{A,B1}:0.398617777651;VSX1,2:0.392544807908;FOXM1:0.367956024493;HSF1,2:0.365013089718;FOXD3:0.333965217844;IKZF1:0.329965607159;HMX1:0.302530889803;TBX4,5:0.280306780145;GFI1B:0.25721003773;TFAP4:0.253759985607;HNF4A_NR2F1,2:0.249394641747;NANOG:0.242653124564;PAX4:0.234740505571;HOX{A4,D4}:0.231222029488;POU1F1:0.219590002818;SOX{8,9,10}:0.179871850118;OCT4_SOX2{dimer}:0.1594756356;PDX1:0.15911265024;RXRA_VDR{dimer}:0.129956882848;AR:0.0904557598602;IKZF2:0.0893473733751;MTF1:0.0845842695334;YY1:0.0702359305458;E2F1..5:0.0667828304799;PBX1:0.0667471515963;ATF6:0.0614750130847;RBPJ:0.0529167343287;ZIC1..3:0.0483080022811;ZNF143:0.00670201690694;HNF1A:-0.00753719237641;NKX2-2,8:-0.0168640674652;CDX1,2,4:-0.0514412169989;TFCP2:-0.0520183187155;SPZ1:-0.0561382971251;ZNF148:-0.0590689854755;NKX3-2:-0.0600735978052;RFX1:-0.0619477130445;PPARG:-0.0764157208419;FOXA2:-0.0857045950728;ZNF384:-0.0938054630239;PITX1..3:-0.105635812191;NFIX:-0.117135583671;FOS_FOS{B,L1}_JUN{B,D}:-0.120601601731;NR3C1:-0.12292894152;MYB:-0.128851506261;POU6F1:-0.129534706145;SOX5:-0.146262216426;FOXL1:-0.155754431009;ALX4:-0.159008225329;LEF1_TCF7_TCF7L1,2:-0.179889122613;SOX2:-0.181984545286;TOPORS:-0.197385792401;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.20689932639;FOX{F1,F2,J1}:-0.225994762271;BACH2:-0.227354989829;KLF4:-0.230090433798;POU2F1..3:-0.232483654268;PRRX1,2:-0.243045533747;GZF1:-0.268090672933;GATA6:-0.275394803107;HIC1:-0.299139967612;ZNF423:-0.30020173611;ALX1:-0.303173139471;REST:-0.310253043776;ZFP161:-0.313974162978;FOSL2:-0.316943069247;ATF5_CREB3:-0.321052636761;NFE2:-0.321767521676;EVI1:-0.324812200005;NFKB1_REL_RELA:-0.327028344491;TBP:-0.349124919392;HBP1_HMGB_SSRP1_UBTF:-0.350200564882;ZBTB6:-0.365939395299;GFI1:-0.368853389673;bHLH_family:-0.372770589628;TFAP2B:-0.381340605459;CRX:-0.392367979086;TFDP1:-0.401365599889;HOXA9_MEIS1:-0.409138230121;FOXN1:-0.417466173577;NKX3-1:-0.419573550944;PAX8:-0.437814879388;PAX2:-0.441370892981;NKX6-1,2:-0.450286469987;BPTF:-0.473056861368;TAL1_TCF{3,4,12}:-0.478807942398;TLX1..3_NFIC{dimer}:-0.490654131839;SPI1:-0.504333514053;CUX2:-0.50495743443;HLF:-0.512789162094;NFIL3:-0.522602523317;IRF7:-0.52519714489;FOX{D1,D2}:-0.532552508732;SRF:-0.532921159317;MEF2{A,B,C,D}:-0.549133646413;SPIB:-0.551323421036;JUN:-0.553221862497;EN1,2:-0.559023378313;DBP:-0.566371084915;NFE2L1:-0.574881717491;NHLH1,2:-0.577624478422;ETS1,2:-0.577764293498;PAX3,7:-0.604093755349;GTF2A1,2:-0.609765689129;EP300:-0.613097320469;TFAP2{A,C}:-0.624996301232;RORA:-0.625208772034;ATF4:-0.633643633429;ATF2:-0.633656013939;ELF1,2,4:-0.661142463979;NFE2L2:-0.679034154911;GCM1,2:-0.688390577911;SREBF1,2:-0.69046237666;CEBPA,B_DDIT3:-0.706998741229;GTF2I:-0.723406422418;MYBL2:-0.739082906245;DMAP1_NCOR{1,2}_SMARC:-0.754089226765;MAZ:-0.755642228357;MED-1{core}:-0.768549853252;RUNX1..3:-0.771913332564;NR1H4:-0.783526333917;STAT2,4,6:-0.785677224079;AHR_ARNT_ARNT2:-0.796401915527;GATA4:-0.80274966587;EBF1:-0.808098634282;HES1:-0.809797355968;HMGA1,2:-0.815202001175;PRDM1:-0.832882548157;FOXP1:-0.842857768706;EGR1..3:-0.856437510182;FOXO1,3,4:-0.85938658444;FOXP3:-0.892541058419;CREB1:-0.909438539379;XBP1:-0.936699249054;TGIF1:-0.946703679197;RREB1:-0.950274579527;IRF1,2:-0.963705010704;MYFfamily:-0.978390190358;BREu{core}:-1.02359398242;TLX2:-1.05203923087;ADNP_IRX_SIX_ZHX:-1.0675321338;MZF1:-1.09319218703;PATZ1:-1.09601772018;MTE{core}:-1.10483033036;POU5F1:-1.11801676495;STAT1,3:-1.15443869038;HIF1A:-1.18939277722;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.21635282236;PAX6:-1.21778282775;MAFB:-1.23452472598;ZNF238:-1.30974097725;NANOG{mouse}:-1.38849479864;RXR{A,B,G}:-1.43948850088;NFATC1..3:-1.45460559358;SMAD1..7,9:-1.49244330549;GLI1..3:-1.57507411941 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10643-109A4;search_select_hide=table117:FF:10643-109A4 | |||
}} | }} | ||
Latest revision as of 14:32, 3 June 2020
| Name: | endometrioid adenocarcinoma cell line:JHUEM-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11748 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11748
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11748
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.17 |
| 10 | 10 | 0.569 |
| 100 | 100 | 0.0496 |
| 101 | 101 | 0.307 |
| 102 | 102 | 0.243 |
| 103 | 103 | 0.128 |
| 104 | 104 | 0.218 |
| 105 | 105 | 0.987 |
| 106 | 106 | 0.477 |
| 107 | 107 | 0.755 |
| 108 | 108 | 0.279 |
| 109 | 109 | 0.00735 |
| 11 | 11 | 0.62 |
| 110 | 110 | 0.0984 |
| 111 | 111 | 0.72 |
| 112 | 112 | 0.39 |
| 113 | 113 | 0.0383 |
| 114 | 114 | 0.652 |
| 115 | 115 | 0.225 |
| 116 | 116 | 0.863 |
| 117 | 117 | 0.209 |
| 118 | 118 | 0.391 |
| 119 | 119 | 0.743 |
| 12 | 12 | 0.0431 |
| 120 | 120 | 0.302 |
| 121 | 121 | 0.254 |
| 122 | 122 | 0.521 |
| 123 | 123 | 0.0944 |
| 124 | 124 | 0.614 |
| 125 | 125 | 0.96 |
| 126 | 126 | 0.571 |
| 127 | 127 | 0.491 |
| 128 | 128 | 0.194 |
| 129 | 129 | 0.111 |
| 13 | 13 | 0.00997 |
| 130 | 130 | 0.99 |
| 131 | 131 | 0.329 |
| 132 | 132 | 0.265 |
| 133 | 133 | 0.186 |
| 134 | 134 | 0.153 |
| 135 | 135 | 0.168 |
| 136 | 136 | 0.00373 |
| 137 | 137 | 0.588 |
| 138 | 138 | 0.396 |
| 139 | 139 | 0.747 |
| 14 | 14 | 0.775 |
| 140 | 140 | 0.444 |
| 141 | 141 | 0.381 |
| 142 | 142 | 0.926 |
| 143 | 143 | 0.312 |
| 144 | 144 | 0.559 |
| 145 | 145 | 0.771 |
| 146 | 146 | 0.927 |
| 147 | 147 | 0.392 |
| 148 | 148 | 0.405 |
| 149 | 149 | 0.422 |
| 15 | 15 | 0.607 |
| 150 | 150 | 0.782 |
| 151 | 151 | 0.412 |
| 152 | 152 | 0.33 |
| 153 | 153 | 0.102 |
| 154 | 154 | 0.396 |
| 155 | 155 | 0.106 |
| 156 | 156 | 0.94 |
| 157 | 157 | 0.855 |
| 158 | 158 | 0.284 |
| 159 | 159 | 0.603 |
| 16 | 16 | 0.0843 |
| 160 | 160 | 0.551 |
| 161 | 161 | 0.532 |
| 162 | 162 | 0.14 |
| 163 | 163 | 0.512 |
| 164 | 164 | 0.399 |
| 165 | 165 | 0.835 |
| 166 | 166 | 0.85 |
| 167 | 167 | 0.472 |
| 168 | 168 | 0.324 |
| 169 | 169 | 0.0854 |
| 17 | 17 | 0.242 |
| 18 | 18 | 0.354 |
| 19 | 19 | 0.899 |
| 2 | 2 | 0.479 |
| 20 | 20 | 0.572 |
| 21 | 21 | 0.747 |
| 22 | 22 | 0.534 |
| 23 | 23 | 0.822 |
| 24 | 24 | 0.137 |
| 25 | 25 | 0.921 |
| 26 | 26 | 0.529 |
| 27 | 27 | 0.479 |
| 28 | 28 | 0.811 |
| 29 | 29 | 0.727 |
| 3 | 3 | 0.839 |
| 30 | 30 | 0.527 |
| 31 | 31 | 0.727 |
| 32 | 32 | 0.659 |
| 33 | 33 | 0.372 |
| 34 | 34 | 0.309 |
| 35 | 35 | 0.29 |
| 36 | 36 | 0.829 |
| 37 | 37 | 0.374 |
| 38 | 38 | 0.419 |
| 39 | 39 | 0.85 |
| 4 | 4 | 0.248 |
| 40 | 40 | 0.124 |
| 41 | 41 | 0.0833 |
| 42 | 42 | 0.734 |
| 43 | 43 | 0.883 |
| 44 | 44 | 0.00916 |
| 45 | 45 | 0.79 |
| 46 | 46 | 0.694 |
| 47 | 47 | 0.344 |
| 48 | 48 | 0.622 |
| 49 | 49 | 0.636 |
| 5 | 5 | 0.617 |
| 50 | 50 | 0.578 |
| 51 | 51 | 0.627 |
| 52 | 52 | 0.798 |
| 53 | 53 | 0.318 |
| 54 | 54 | 0.756 |
| 55 | 55 | 0.418 |
| 56 | 56 | 0.744 |
| 57 | 57 | 0.777 |
| 58 | 58 | 0.785 |
| 59 | 59 | 0.964 |
| 6 | 6 | 0.569 |
| 60 | 60 | 0.997 |
| 61 | 61 | 0.249 |
| 62 | 62 | 0.824 |
| 63 | 63 | 0.365 |
| 64 | 64 | 0.667 |
| 65 | 65 | 0.797 |
| 66 | 66 | 0.0224 |
| 67 | 67 | 0.87 |
| 68 | 68 | 0.0308 |
| 69 | 69 | 0.519 |
| 7 | 7 | 0.405 |
| 70 | 70 | 0.452 |
| 71 | 71 | 0.725 |
| 72 | 72 | 0.359 |
| 73 | 73 | 0.0755 |
| 74 | 74 | 0.375 |
| 75 | 75 | 0.125 |
| 76 | 76 | 0.772 |
| 77 | 77 | 0.179 |
| 78 | 78 | 0.125 |
| 79 | 79 | 0.383 |
| 8 | 8 | 0.381 |
| 80 | 80 | 0.00489 |
| 81 | 81 | 0.844 |
| 82 | 82 | 0.841 |
| 83 | 83 | 0.788 |
| 84 | 84 | 0.341 |
| 85 | 85 | 0.382 |
| 86 | 86 | 0.619 |
| 87 | 87 | 0.0434 |
| 88 | 88 | 0.353 |
| 89 | 89 | 0.0821 |
| 9 | 9 | 0.211 |
| 90 | 90 | 0.125 |
| 91 | 91 | 0.0889 |
| 92 | 92 | 0.534 |
| 93 | 93 | 0.442 |
| 94 | 94 | 0.345 |
| 95 | 95 | 0.0112 |
| 96 | 96 | 0.352 |
| 97 | 97 | 0.895 |
| 98 | 98 | 0.301 |
| 99 | 99 | 0.272 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11748
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100658 uterine adenocarcinoma cell sample
FF:0101555 endometrial cancer cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002149 (epithelial cell of uterus)
0002255 (stromal cell of endometrium)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
299 (adenocarcinoma)
3001 (female reproductive endometrioid cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100658 (uterine adenocarcinoma cell sample)
0101555 (endometrial cancer cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)
