FF:12181-129A3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=RNA-Seq@SAMD00013674 | ||
|ancestors_in_cell_lineage_facet= | |accession_numbers=CAGE;DRX008531;DRR009403;DRZ000828;DRZ002213;DRZ012178;DRZ013563!RNA-Seq;DRX012355;DRR013803;DRZ003004; | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0010053,FF:0000004,FF:0000281 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation3.CNhs11948.12181-129A3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation3.CNhs11948.12181-129A3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation3.CNhs11948.12181-129A3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation3.CNhs11948.12181-129A3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation3.CNhs11948.12181-129A3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12181-129A3 | |id=FF:12181-129A3 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0000281 | ||
|is_obsolete= | |||
|library_id=CNhs11948!RDhi10002 | |||
|library_id_phase_based=2:CNhs11948 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12181 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12181 | |||
|name=Whole blood (ribopure), donor090309, donation3 | |name=Whole blood (ribopure), donor090309, donation3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11948,LSID836,release011,COMPLETED | |profile_hcage=CNhs11948,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.33027054911511,0,0,0,0.195802046114694,0,0.0354840160283082,0,0.608378022755075,-0.0245600884991823,0,0,0,0,0,0,0,0,0,0,0.585261690836051,0,0,0.799714380276071,0,0,0,0,0.195802046114694,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.650302254902025,0,0,0,0,0,0,0,0,0.073686001944513,0,0,0,0.924559079746864,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0.0197008858725385,0,0,0,0,0,0.33027054911511,0,0.33027054911511,0,0,0.33027054911511,0,0,0,0.216643134725372,0.097901023057347,0,0,0,0,0,-0.239167420763334,0,0,0,-0.0584468268118252,-0.211197402695869,0,0,0,0,0.097766694876988,0.0266580737566595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.444006467811233,0.69410707946842,0,0,0,0,0,0 | |||
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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=14.1 | |rna_weight_ug=14.1 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.36433523492612e-245!GO:0043227;membrane-bound organelle;4.45968738552051e-129!GO:0005737;cytoplasm;4.45968738552051e-129!GO:0043231;intracellular membrane-bound organelle;6.11101239818894e-129!GO:0043226;organelle;2.11342967361799e-125!GO:0043229;intracellular organelle;9.2985553328764e-125!GO:0044444;cytoplasmic part;1.23322585834908e-81!GO:0044422;organelle part;5.02551910169905e-71!GO:0044446;intracellular organelle part;1.08856508117667e-69!GO:0043170;macromolecule metabolic process;6.51408915941411e-65!GO:0044237;cellular metabolic process;9.67149050044855e-65!GO:0005515;protein binding;4.34663704706077e-64!GO:0044238;primary metabolic process;1.72986538102209e-63!GO:0032991;macromolecular complex;3.73151113916571e-63!GO:0005634;nucleus;8.85539089074938e-60!GO:0003723;RNA binding;2.44166885454317e-48!GO:0044428;nuclear part;1.80666822942831e-47!GO:0030529;ribonucleoprotein complex;2.15958433639032e-45!GO:0019538;protein metabolic process;1.55946710324845e-44!GO:0033036;macromolecule localization;8.16867786983616e-42!GO:0015031;protein transport;1.30050416131278e-41!GO:0044267;cellular protein metabolic process;7.94949764791519e-41!GO:0044260;cellular macromolecule metabolic process;7.94949764791519e-41!GO:0045184;establishment of protein localization;1.58315818160169e-40!GO:0043283;biopolymer metabolic process;2.91990821107279e-39!GO:0008104;protein localization;3.87883085227196e-39!GO:0043233;organelle lumen;2.1389065372916e-38!GO:0031974;membrane-enclosed lumen;2.1389065372916e-38!GO:0005829;cytosol;1.11503042644546e-34!GO:0043234;protein complex;1.15052329884543e-34!GO:0006412;translation;2.67777413790785e-34!GO:0010467;gene expression;3.69547678293074e-33!GO:0016071;mRNA metabolic process;3.25703689128723e-30!GO:0031981;nuclear lumen;7.79468041102176e-30!GO:0006396;RNA processing;1.86949854860621e-29!GO:0031090;organelle membrane;2.63047282557652e-29!GO:0005739;mitochondrion;3.20842362589426e-28!GO:0016043;cellular component organization and biogenesis;1.34363647212417e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.34680858251321e-27!GO:0008380;RNA splicing;3.96185451357516e-26!GO:0046907;intracellular transport;7.90048729701145e-26!GO:0009059;macromolecule biosynthetic process;8.23709864217056e-26!GO:0012501;programmed cell death;1.97531586280576e-25!GO:0006915;apoptosis;1.97531586280576e-25!GO:0006397;mRNA processing;4.50110018356219e-25!GO:0006886;intracellular protein transport;8.1499225822149e-25!GO:0008219;cell death;2.12446205635364e-24!GO:0016265;death;2.12446205635364e-24!GO:0005840;ribosome;2.42989504673035e-24!GO:0031967;organelle envelope;1.55952344017821e-23!GO:0031975;envelope;2.26082294868999e-23!GO:0065003;macromolecular complex assembly;2.62321098459804e-22!GO:0044445;cytosolic part;3.00429719285888e-22!GO:0009058;biosynthetic process;1.04141859504472e-21!GO:0003735;structural constituent of ribosome;1.06408032051695e-21!GO:0044249;cellular biosynthetic process;1.37544719461226e-21!GO:0005654;nucleoplasm;5.1523739257809e-21!GO:0051649;establishment of cellular localization;1.09315466803714e-20!GO:0051641;cellular localization;1.74195845104277e-20!GO:0043412;biopolymer modification;3.00096493620883e-20!GO:0033279;ribosomal subunit;3.05740751458509e-20!GO:0044429;mitochondrial part;5.31044507010797e-20!GO:0022607;cellular component assembly;8.26708214637394e-20!GO:0000166;nucleotide binding;1.10824941722886e-19!GO:0008134;transcription factor binding;1.90188259046416e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.1393522973367e-19!GO:0006464;protein modification process;1.2551527231821e-18!GO:0005681;spliceosome;1.82380220634158e-18!GO:0006512;ubiquitin cycle;2.37071219067282e-18!GO:0042981;regulation of apoptosis;2.98324090910497e-18!GO:0043067;regulation of programmed cell death;5.40741321612757e-18!GO:0002376;immune system process;1.87350309205848e-17!GO:0044451;nucleoplasm part;3.26642615251341e-17!GO:0043687;post-translational protein modification;5.45736248982975e-17!GO:0044265;cellular macromolecule catabolic process;2.95779242896505e-16!GO:0016192;vesicle-mediated transport;3.36624963887953e-16!GO:0006996;organelle organization and biogenesis;5.19596728576893e-16!GO:0016070;RNA metabolic process;5.67574103250819e-16!GO:0003676;nucleic acid binding;6.19509865949394e-16!GO:0016462;pyrophosphatase activity;3.5888208206696e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.5888208206696e-15!GO:0032553;ribonucleotide binding;4.13137249969432e-15!GO:0032555;purine ribonucleotide binding;4.13137249969432e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;4.27866013681022e-15!GO:0006119;oxidative phosphorylation;4.64057137056025e-15!GO:0005740;mitochondrial envelope;5.94852672663853e-15!GO:0007243;protein kinase cascade;6.68908826967585e-15!GO:0017111;nucleoside-triphosphatase activity;1.04086796031873e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.33236242269818e-14!GO:0031966;mitochondrial membrane;2.51856450315815e-14!GO:0007242;intracellular signaling cascade;2.87332833267059e-14!GO:0017076;purine nucleotide binding;3.3822594970284e-14!GO:0006259;DNA metabolic process;3.57399891297393e-14!GO:0016874;ligase activity;3.84929400276704e-14!GO:0019866;organelle inner membrane;1.18882289360419e-13!GO:0050794;regulation of cellular process;1.36652222499401e-13!GO:0016604;nuclear body;1.5580951970569e-13!GO:0019941;modification-dependent protein catabolic process;4.911409561585e-13!GO:0043632;modification-dependent macromolecule catabolic process;4.911409561585e-13!GO:0006793;phosphorus metabolic process;5.02302700146182e-13!GO:0006796;phosphate metabolic process;5.02302700146182e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;5.46053356922601e-13!GO:0006913;nucleocytoplasmic transport;5.89342885555881e-13!GO:0006605;protein targeting;7.38077581387714e-13!GO:0006511;ubiquitin-dependent protein catabolic process;7.51439067156381e-13!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.06384660173798e-12!GO:0051169;nuclear transport;1.12506248135323e-12!GO:0048770;pigment granule;1.15057779238737e-12!GO:0042470;melanosome;1.15057779238737e-12!GO:0044257;cellular protein catabolic process;1.32566124415549e-12!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.01527195567604e-12!GO:0043285;biopolymer catabolic process;2.39629903445068e-12!GO:0022618;protein-RNA complex assembly;2.59648091049249e-12!GO:0005794;Golgi apparatus;3.48235556516954e-12!GO:0009057;macromolecule catabolic process;4.04854043010612e-12!GO:0003712;transcription cofactor activity;4.31629508712707e-12!GO:0016310;phosphorylation;4.9383857469541e-12!GO:0005743;mitochondrial inner membrane;5.77080206156434e-12!GO:0006955;immune response;7.40475153246557e-12!GO:0005768;endosome;1.03097225802486e-11!GO:0051246;regulation of protein metabolic process;1.58104700086312e-11!GO:0016607;nuclear speck;1.95009978003297e-11!GO:0012505;endomembrane system;2.20186757983186e-11!GO:0044248;cellular catabolic process;5.14617414738781e-11!GO:0005524;ATP binding;8.21670170652234e-11!GO:0043069;negative regulation of programmed cell death;8.52164675401734e-11!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.942760345619e-11!GO:0032559;adenyl ribonucleotide binding;1.0690874537905e-10!GO:0015934;large ribosomal subunit;1.27966640353925e-10!GO:0043066;negative regulation of apoptosis;1.28731356022268e-10!GO:0015935;small ribosomal subunit;1.62048930206283e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.64989824129054e-10!GO:0043228;non-membrane-bound organelle;1.83837268093276e-10!GO:0043232;intracellular non-membrane-bound organelle;1.83837268093276e-10!GO:0050789;regulation of biological process;2.46740786794326e-10!GO:0048523;negative regulation of cellular process;2.97550735153384e-10!GO:0006916;anti-apoptosis;3.33920862323555e-10!GO:0044455;mitochondrial membrane part;3.54903666068078e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.68764423003363e-10!GO:0008639;small protein conjugating enzyme activity;5.21641565721003e-10!GO:0019787;small conjugating protein ligase activity;6.69430339296895e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.82333601640705e-10!GO:0008135;translation factor activity, nucleic acid binding;7.25287981870698e-10!GO:0005773;vacuole;8.1613813709365e-10!GO:0030554;adenyl nucleotide binding;8.58584259737904e-10!GO:0006323;DNA packaging;8.81935549159707e-10!GO:0004842;ubiquitin-protein ligase activity;1.26407153532184e-09!GO:0005635;nuclear envelope;1.31654793355515e-09!GO:0051186;cofactor metabolic process;1.32894189547133e-09!GO:0005746;mitochondrial respiratory chain;1.84210609009409e-09!GO:0000502;proteasome complex (sensu Eukaryota);1.87022639962112e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;2.02206756398307e-09!GO:0000375;RNA splicing, via transesterification reactions;2.02206756398307e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.02206756398307e-09!GO:0006457;protein folding;2.25134930439274e-09!GO:0048193;Golgi vesicle transport;2.87233813268807e-09!GO:0006366;transcription from RNA polymerase II promoter;3.03655364841547e-09!GO:0065009;regulation of a molecular function;3.0442989188101e-09!GO:0030163;protein catabolic process;4.53990067379947e-09!GO:0007264;small GTPase mediated signal transduction;7.73607577147694e-09!GO:0016568;chromatin modification;9.01008154060168e-09!GO:0000323;lytic vacuole;9.22022488222692e-09!GO:0005764;lysosome;9.22022488222692e-09!GO:0017038;protein import;9.37990139753968e-09!GO:0050136;NADH dehydrogenase (quinone) activity;1.00891560242926e-08!GO:0003954;NADH dehydrogenase activity;1.00891560242926e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.00891560242926e-08!GO:0065007;biological regulation;1.07712203293776e-08!GO:0019222;regulation of metabolic process;1.11485146154555e-08!GO:0048519;negative regulation of biological process;1.28761310664652e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.64071350943188e-08!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.1294346490733e-08!GO:0043065;positive regulation of apoptosis;3.27899770664326e-08!GO:0003713;transcription coactivator activity;3.43504479447401e-08!GO:0005730;nucleolus;4.2370736778167e-08!GO:0005770;late endosome;4.27173710316697e-08!GO:0043068;positive regulation of programmed cell death;5.29753155115389e-08!GO:0019829;cation-transporting ATPase activity;5.34248771798683e-08!GO:0016881;acid-amino acid ligase activity;5.39307372414323e-08!GO:0019899;enzyme binding;5.56351036358268e-08!GO:0003924;GTPase activity;6.82224946437027e-08!GO:0006446;regulation of translational initiation;6.86788620309585e-08!GO:0003743;translation initiation factor activity;7.48320864060269e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.89526390200649e-08!GO:0031965;nuclear membrane;8.64368103516115e-08!GO:0051276;chromosome organization and biogenesis;9.51097139269345e-08!GO:0042775;organelle ATP synthesis coupled electron transport;1.0304272516879e-07!GO:0042773;ATP synthesis coupled electron transport;1.0304272516879e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.04013323395118e-07!GO:0016887;ATPase activity;1.08454979462904e-07!GO:0006917;induction of apoptosis;1.28934323253351e-07!GO:0051170;nuclear import;1.2934247368326e-07!GO:0044440;endosomal part;1.48945823923711e-07!GO:0010008;endosome membrane;1.48945823923711e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.50781921768264e-07!GO:0006606;protein import into nucleus;1.73714257669212e-07!GO:0030964;NADH dehydrogenase complex (quinone);2.00400705512071e-07!GO:0045271;respiratory chain complex I;2.00400705512071e-07!GO:0005747;mitochondrial respiratory chain complex I;2.00400705512071e-07!GO:0006413;translational initiation;2.01856379537949e-07!GO:0009150;purine ribonucleotide metabolic process;2.06058886512909e-07!GO:0012502;induction of programmed cell death;2.17017961790447e-07!GO:0031980;mitochondrial lumen;2.17017961790447e-07!GO:0005759;mitochondrial matrix;2.17017961790447e-07!GO:0009259;ribonucleotide metabolic process;2.33059432902245e-07!GO:0042623;ATPase activity, coupled;2.62913321556596e-07!GO:0045321;leukocyte activation;2.73750719985337e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.25525860554822e-07!GO:0005525;GTP binding;3.27525327671067e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.03706433352091e-07!GO:0006163;purine nucleotide metabolic process;5.02655490426666e-07!GO:0060090;molecular adaptor activity;5.03003902141926e-07!GO:0016787;hydrolase activity;5.25771180521452e-07!GO:0009615;response to virus;5.42093510108165e-07!GO:0006461;protein complex assembly;5.47597498606209e-07!GO:0006950;response to stress;5.60870803707256e-07!GO:0015986;ATP synthesis coupled proton transport;5.70784547584664e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.70784547584664e-07!GO:0009152;purine ribonucleotide biosynthetic process;6.33937260462474e-07!GO:0032446;protein modification by small protein conjugation;6.42613847109345e-07!GO:0006417;regulation of translation;7.10459859041633e-07!GO:0009967;positive regulation of signal transduction;7.12218371119568e-07!GO:0051082;unfolded protein binding;1.03351546238138e-06!GO:0016567;protein ubiquitination;1.11258655232469e-06!GO:0001775;cell activation;1.33803512741839e-06!GO:0006732;coenzyme metabolic process;1.51173253136953e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.54404806180858e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.54404806180858e-06!GO:0006164;purine nucleotide biosynthetic process;1.61712937737596e-06!GO:0009260;ribonucleotide biosynthetic process;2.06297906561258e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.06408376553983e-06!GO:0044453;nuclear membrane part;2.21182178374632e-06!GO:0016564;transcription repressor activity;2.21309500532517e-06!GO:0005774;vacuolar membrane;2.2866958684665e-06!GO:0046034;ATP metabolic process;2.3149951960098e-06!GO:0005783;endoplasmic reticulum;2.3183867376098e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.3183867376098e-06!GO:0007265;Ras protein signal transduction;2.54022381910442e-06!GO:0046649;lymphocyte activation;2.58375396562787e-06!GO:0031323;regulation of cellular metabolic process;2.58375396562787e-06!GO:0002764;immune response-regulating signal transduction;2.59046747625682e-06!GO:0008565;protein transporter activity;2.66091827997578e-06!GO:0008632;apoptotic program;2.98412298228168e-06!GO:0016563;transcription activator activity;3.18255868149372e-06!GO:0050790;regulation of catalytic activity;3.20625732988163e-06!GO:0032561;guanyl ribonucleotide binding;3.46194043771827e-06!GO:0019001;guanyl nucleotide binding;3.46194043771827e-06!GO:0048522;positive regulation of cellular process;3.46667142925009e-06!GO:0007049;cell cycle;3.59800529395532e-06!GO:0050657;nucleic acid transport;3.8838546310607e-06!GO:0051236;establishment of RNA localization;3.8838546310607e-06!GO:0050658;RNA transport;3.8838546310607e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.89316531881147e-06!GO:0030097;hemopoiesis;3.91583227024831e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.0292747211337e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.0292747211337e-06!GO:0009141;nucleoside triphosphate metabolic process;4.13247219652429e-06!GO:0006754;ATP biosynthetic process;4.79238238252005e-06!GO:0006753;nucleoside phosphate metabolic process;4.79238238252005e-06!GO:0006403;RNA localization;4.81781198098271e-06!GO:0008047;enzyme activator activity;4.90940738389841e-06!GO:0002757;immune response-activating signal transduction;5.32692664294333e-06!GO:0009142;nucleoside triphosphate biosynthetic process;5.47644933483122e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.47644933483122e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.86374709866366e-06!GO:0006333;chromatin assembly or disassembly;5.9097557813694e-06!GO:0031326;regulation of cellular biosynthetic process;5.92099321781369e-06!GO:0009056;catabolic process;6.01516270949457e-06!GO:0043566;structure-specific DNA binding;6.27546767835217e-06!GO:0005765;lysosomal membrane;7.8735984902756e-06!GO:0001772;immunological synapse;8.44863235181483e-06!GO:0030695;GTPase regulator activity;8.46965840999718e-06!GO:0044437;vacuolar part;9.92674845774961e-06!GO:0002768;immune response-regulating cell surface receptor signaling pathway;1.06942015533676e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.08329057583814e-05!GO:0000151;ubiquitin ligase complex;1.09680187941456e-05!GO:0051188;cofactor biosynthetic process;1.19160878420901e-05!GO:0005793;ER-Golgi intermediate compartment;1.28752698297046e-05!GO:0048518;positive regulation of biological process;1.39307318574252e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.43249077212891e-05!GO:0030218;erythrocyte differentiation;1.47251877525485e-05!GO:0031324;negative regulation of cellular metabolic process;1.53633942783869e-05!GO:0006974;response to DNA damage stimulus;1.57266597547099e-05!GO:0009966;regulation of signal transduction;1.62921307846685e-05!GO:0004674;protein serine/threonine kinase activity;2.01820823361235e-05!GO:0065004;protein-DNA complex assembly;2.22102593113422e-05!GO:0002429;immune response-activating cell surface receptor signaling pathway;2.23719849183191e-05!GO:0045786;negative regulation of progression through cell cycle;2.28228497966471e-05!GO:0044431;Golgi apparatus part;2.2950507403697e-05!GO:0003697;single-stranded DNA binding;2.29677504334392e-05!GO:0009889;regulation of biosynthetic process;2.44359244724522e-05!GO:0031902;late endosome membrane;2.44373391988678e-05!GO:0016197;endosome transport;2.45623287503332e-05!GO:0009892;negative regulation of metabolic process;2.71290637989259e-05!GO:0005070;SH3/SH2 adaptor activity;2.95395732024665e-05!GO:0005643;nuclear pore;3.0219325709259e-05!GO:0048475;coated membrane;3.08606389322813e-05!GO:0030117;membrane coat;3.08606389322813e-05!GO:0051028;mRNA transport;3.18721545326767e-05!GO:0031982;vesicle;3.23663276629767e-05!GO:0016740;transferase activity;3.39352004768706e-05!GO:0051726;regulation of cell cycle;3.50683355327622e-05!GO:0000785;chromatin;3.792273332093e-05!GO:0042110;T cell activation;3.792273332093e-05!GO:0002520;immune system development;3.88232098170903e-05!GO:0000074;regulation of progression through cell cycle;4.03742480315103e-05!GO:0004386;helicase activity;4.44428739815135e-05!GO:0030099;myeloid cell differentiation;4.75163255499068e-05!GO:0006401;RNA catabolic process;4.77252447479092e-05!GO:0030120;vesicle coat;4.77252447479092e-05!GO:0030662;coated vesicle membrane;4.77252447479092e-05!GO:0016044;membrane organization and biogenesis;5.08757879938032e-05!GO:0010468;regulation of gene expression;5.80693684063864e-05!GO:0008026;ATP-dependent helicase activity;5.91061849122178e-05!GO:0051336;regulation of hydrolase activity;6.60773238213166e-05!GO:0009117;nucleotide metabolic process;7.53059948539831e-05!GO:0000245;spliceosome assembly;8.01280101370232e-05!GO:0031252;leading edge;8.27910486941749e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.78256735909977e-05!GO:0044432;endoplasmic reticulum part;9.58660997018144e-05!GO:0045259;proton-transporting ATP synthase complex;9.69059130721925e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.77569551966511e-05!GO:0051168;nuclear export;9.79103429247247e-05!GO:0016481;negative regulation of transcription;9.81729671921433e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000110451582142234!GO:0015399;primary active transmembrane transporter activity;0.000110451582142234!GO:0003714;transcription corepressor activity;0.000111004972733985!GO:0009060;aerobic respiration;0.000123387879542301!GO:0004298;threonine endopeptidase activity;0.000125329587857595!GO:0005083;small GTPase regulator activity;0.000131906025010451!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000143425930969588!GO:0031410;cytoplasmic vesicle;0.000147310345705088!GO:0051251;positive regulation of lymphocyte activation;0.000147488495416185!GO:0009055;electron carrier activity;0.000150754027766548!GO:0005096;GTPase activator activity;0.000152768768891852!GO:0030532;small nuclear ribonucleoprotein complex;0.00015558355986528!GO:0065002;intracellular protein transport across a membrane;0.000163389096551363!GO:0008270;zinc ion binding;0.000166000938851815!GO:0046930;pore complex;0.000168182972272019!GO:0006752;group transfer coenzyme metabolic process;0.000172319246827305!GO:0032940;secretion by cell;0.00018760385340751!GO:0006888;ER to Golgi vesicle-mediated transport;0.000189222300536104!GO:0006350;transcription;0.000195213605684486!GO:0048468;cell development;0.000206342317675851!GO:0031988;membrane-bound vesicle;0.000209597492242144!GO:0006402;mRNA catabolic process;0.000209597492242144!GO:0005057;receptor signaling protein activity;0.000211177285673062!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000211916383257406!GO:0005885;Arp2/3 protein complex;0.000214732736924438!GO:0006613;cotranslational protein targeting to membrane;0.000214732736924438!GO:0043492;ATPase activity, coupled to movement of substances;0.000214732736924438!GO:0048534;hemopoietic or lymphoid organ development;0.000223972274892679!GO:0005769;early endosome;0.000226261883818253!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000229861952830696!GO:0018193;peptidyl-amino acid modification;0.000264021184981199!GO:0016301;kinase activity;0.000312074031934087!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000326367107415588!GO:0006281;DNA repair;0.000349242654468448!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000383469763193481!GO:0046914;transition metal ion binding;0.000383469763193481!GO:0050851;antigen receptor-mediated signaling pathway;0.000383850055668849!GO:0009607;response to biotic stimulus;0.000385050876063184!GO:0003724;RNA helicase activity;0.000409596091045327!GO:0042101;T cell receptor complex;0.000409968180978024!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000413425053875931!GO:0005761;mitochondrial ribosome;0.000414289669028319!GO:0000313;organellar ribosome;0.000414289669028319!GO:0000139;Golgi membrane;0.00041768588831501!GO:0009108;coenzyme biosynthetic process;0.000431658481060481!GO:0005694;chromosome;0.000431658481060481!GO:0001816;cytokine production;0.000444548176925347!GO:0016023;cytoplasmic membrane-bound vesicle;0.000476800778910712!GO:0006468;protein amino acid phosphorylation;0.000480890169396568!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000557766955998926!GO:0051427;hormone receptor binding;0.000557766955998926!GO:0005798;Golgi-associated vesicle;0.000559496436766368!GO:0044427;chromosomal part;0.000576171224246341!GO:0042254;ribosome biogenesis and assembly;0.000576171224246341!GO:0005789;endoplasmic reticulum membrane;0.000583002889488014!GO:0030036;actin cytoskeleton organization and biogenesis;0.000601876222120015!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000620720842442984!GO:0045045;secretory pathway;0.000773227979109234!GO:0045333;cellular respiration;0.000837471229076136!GO:0006650;glycerophospholipid metabolic process;0.0008943023071281!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00094265712426208!GO:0035257;nuclear hormone receptor binding;0.000973829463418476!GO:0006919;caspase activation;0.00103899813099303!GO:0046822;regulation of nucleocytoplasmic transport;0.00115654998012918!GO:0008624;induction of apoptosis by extracellular signals;0.00121832952049153!GO:0031497;chromatin assembly;0.00134763722420024!GO:0042113;B cell activation;0.00135571536783198!GO:0008654;phospholipid biosynthetic process;0.00136802796268289!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00136802796268289!GO:0016779;nucleotidyltransferase activity;0.00142119538375953!GO:0022402;cell cycle process;0.00158081533517859!GO:0030041;actin filament polymerization;0.00160301143767236!GO:0006334;nucleosome assembly;0.00177322513910357!GO:0006099;tricarboxylic acid cycle;0.00182442526757169!GO:0046356;acetyl-CoA catabolic process;0.00182442526757169!GO:0007034;vacuolar transport;0.0019006180706855!GO:0019904;protein domain specific binding;0.00190786533730527!GO:0006818;hydrogen transport;0.00205091467831023!GO:0015992;proton transport;0.00210824892304007!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.00212151212526537!GO:0016363;nuclear matrix;0.00230793466318793!GO:0043281;regulation of caspase activity;0.00235189207013949!GO:0006612;protein targeting to membrane;0.00238675121640576!GO:0001726;ruffle;0.00240914139510741!GO:0007050;cell cycle arrest;0.0024279091107846!GO:0043087;regulation of GTPase activity;0.00247816253068208!GO:0006611;protein export from nucleus;0.0025706669941772!GO:0006897;endocytosis;0.00278911487534263!GO:0010324;membrane invagination;0.00278911487534263!GO:0030384;phosphoinositide metabolic process;0.00286602319773411!GO:0050865;regulation of cell activation;0.00286602319773411!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00297670817118168!GO:0004812;aminoacyl-tRNA ligase activity;0.00297670817118168!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00297670817118168!GO:0008154;actin polymerization and/or depolymerization;0.00311335470299778!GO:0022890;inorganic cation transmembrane transporter activity;0.00315116217438126!GO:0050870;positive regulation of T cell activation;0.00315992852049495!GO:0051249;regulation of lymphocyte activation;0.00318241233931933!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00329840794423277!GO:0019221;cytokine and chemokine mediated signaling pathway;0.00330930131148799!GO:0004722;protein serine/threonine phosphatase activity;0.00331346405172737!GO:0008186;RNA-dependent ATPase activity;0.00333883565723074!GO:0031901;early endosome membrane;0.00337765795249044!GO:0006084;acetyl-CoA metabolic process;0.00339224859341408!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00339224859341408!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00351947519444541!GO:0002252;immune effector process;0.00365005389920152!GO:0043280;positive regulation of caspase activity;0.00367759271499174!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00372866396562104!GO:0003690;double-stranded DNA binding;0.00379966618993649!GO:0051223;regulation of protein transport;0.00383382616541824!GO:0003729;mRNA binding;0.00389036948442829!GO:0045449;regulation of transcription;0.00419113528574355!GO:0005741;mitochondrial outer membrane;0.0043826525152792!GO:0030029;actin filament-based process;0.004434485015693!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.00456140516350637!GO:0008637;apoptotic mitochondrial changes;0.00461288335260447!GO:0006399;tRNA metabolic process;0.00488081775799809!GO:0051187;cofactor catabolic process;0.00490712113626395!GO:0043623;cellular protein complex assembly;0.0049093291725991!GO:0048250;mitochondrial iron ion transport;0.00493920034133142!GO:0005813;centrosome;0.00495293217746257!GO:0045892;negative regulation of transcription, DNA-dependent;0.00498578164272892!GO:0043038;amino acid activation;0.00500743329490306!GO:0006418;tRNA aminoacylation for protein translation;0.00500743329490306!GO:0043039;tRNA aminoacylation;0.00500743329490306!GO:0016072;rRNA metabolic process;0.00506198270275581!GO:0009719;response to endogenous stimulus;0.00513604983919744!GO:0002443;leukocyte mediated immunity;0.00518108608320146!GO:0006643;membrane lipid metabolic process;0.00519106061731641!GO:0051092;activation of NF-kappaB transcription factor;0.00525764426485564!GO:0050811;GABA receptor binding;0.00530793854679922!GO:0030867;rough endoplasmic reticulum membrane;0.0054344264090214!GO:0016505;apoptotic protease activator activity;0.0054344264090214!GO:0001819;positive regulation of cytokine production;0.0056130687650407!GO:0002521;leukocyte differentiation;0.00561966243892044!GO:0001817;regulation of cytokine production;0.00563094963805087!GO:0007041;lysosomal transport;0.00581643795492713!GO:0050871;positive regulation of B cell activation;0.00596493508995687!GO:0006891;intra-Golgi vesicle-mediated transport;0.00596493508995687!GO:0051707;response to other organism;0.00602362872941758!GO:0002274;myeloid leukocyte activation;0.00609349519743677!GO:0030118;clathrin coat;0.00622341922649604!GO:0006364;rRNA processing;0.00633379039146239!GO:0008234;cysteine-type peptidase activity;0.00657558731512562!GO:0030658;transport vesicle membrane;0.00663664602870842!GO:0048471;perinuclear region of cytoplasm;0.00664186227950139!GO:0045576;mast cell activation;0.00707609689950023!GO:0043021;ribonucleoprotein binding;0.0071337171027293!GO:0005637;nuclear inner membrane;0.00715580561905702!GO:0000287;magnesium ion binding;0.00727141935376662!GO:0030518;steroid hormone receptor signaling pathway;0.0072753194283926!GO:0033116;ER-Golgi intermediate compartment membrane;0.00768514236574946!GO:0009109;coenzyme catabolic process;0.0079444037268275!GO:0007005;mitochondrion organization and biogenesis;0.0079805159224321!GO:0032774;RNA biosynthetic process;0.00804755430394959!GO:0051252;regulation of RNA metabolic process;0.00811557197299589!GO:0051049;regulation of transport;0.00811557197299589!GO:0006351;transcription, DNA-dependent;0.00813217028221729!GO:0042802;identical protein binding;0.00825873056203648!GO:0046456;icosanoid biosynthetic process;0.00825873056203648!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00841153704794191!GO:0004004;ATP-dependent RNA helicase activity;0.00841153704794191!GO:0005099;Ras GTPase activator activity;0.0084712826794367!GO:0006968;cellular defense response;0.00858613100929861!GO:0051090;regulation of transcription factor activity;0.0086302412745402!GO:0043299;leukocyte degranulation;0.00866344332075868!GO:0042287;MHC protein binding;0.00894996002586192!GO:0022415;viral reproductive process;0.0090081595978399!GO:0045454;cell redox homeostasis;0.0092433724454401!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00951739322596169!GO:0031072;heat shock protein binding;0.00952085238346964!GO:0008287;protein serine/threonine phosphatase complex;0.0101588350993221!GO:0005667;transcription factor complex;0.0101727806386848!GO:0016791;phosphoric monoester hydrolase activity;0.0105477582472871!GO:0033157;regulation of intracellular protein transport;0.0105964224178571!GO:0042306;regulation of protein import into nucleus;0.0105964224178571!GO:0019867;outer membrane;0.010896823955135!GO:0030674;protein binding, bridging;0.0110064306118102!GO:0043300;regulation of leukocyte degranulation;0.0111498015721142!GO:0043506;regulation of JNK activity;0.0112406174342502!GO:0008656;caspase activator activity;0.0117532995870237!GO:0051338;regulation of transferase activity;0.0117907412750737!GO:0031968;organelle outer membrane;0.0119273944517716!GO:0005815;microtubule organizing center;0.0120225597028652!GO:0044262;cellular carbohydrate metabolic process;0.0120812591257751!GO:0051920;peroxiredoxin activity;0.0122025495670207!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0123332342067058!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0123332342067058!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0123332342067058!GO:0032318;regulation of Ras GTPase activity;0.0125666593893387!GO:0051050;positive regulation of transport;0.0127132827722191!GO:0050863;regulation of T cell activation;0.0128626647408036!GO:0019883;antigen processing and presentation of endogenous antigen;0.0129147318064493!GO:0030133;transport vesicle;0.0135293509184363!GO:0043028;caspase regulator activity;0.013686936129454!GO:0006914;autophagy;0.0140150455396155!GO:0051345;positive regulation of hydrolase activity;0.0142472562369996!GO:0008286;insulin receptor signaling pathway;0.0144331546552381!GO:0003725;double-stranded RNA binding;0.0148916615950737!GO:0005791;rough endoplasmic reticulum;0.0149094377019379!GO:0043085;positive regulation of catalytic activity;0.0149183170808466!GO:0043488;regulation of mRNA stability;0.0152124291500775!GO:0043487;regulation of RNA stability;0.0152124291500775!GO:0047485;protein N-terminus binding;0.0155336621419636!GO:0006595;polyamine metabolic process;0.0158801590163082!GO:0043549;regulation of kinase activity;0.0159076307839608!GO:0030660;Golgi-associated vesicle membrane;0.0159888736214622!GO:0004185;serine carboxypeptidase activity;0.0160389541272141!GO:0048487;beta-tubulin binding;0.0160580008092429!GO:0006672;ceramide metabolic process;0.0162152532776588!GO:0019955;cytokine binding;0.0164141353220977!GO:0030258;lipid modification;0.0164227362619446!GO:0016584;nucleosome positioning;0.016720152249843!GO:0045058;T cell selection;0.0169170562147715!GO:0042168;heme metabolic process;0.0170722207635577!GO:0048002;antigen processing and presentation of peptide antigen;0.0171107223863067!GO:0030521;androgen receptor signaling pathway;0.0175482615502339!GO:0019865;immunoglobulin binding;0.0176334845108996!GO:0046966;thyroid hormone receptor binding;0.0183859678114428!GO:0000118;histone deacetylase complex;0.0184698562690564!GO:0005521;lamin binding;0.0186678117170731!GO:0048821;erythrocyte development;0.018732385337338!GO:0006644;phospholipid metabolic process;0.0189370722843251!GO:0046474;glycerophospholipid biosynthetic process;0.0190058056342!GO:0001836;release of cytochrome c from mitochondria;0.0192244571761063!GO:0045653;negative regulation of megakaryocyte differentiation;0.0196511500211261!GO:0030119;AP-type membrane coat adaptor complex;0.0198495630514104!GO:0045309;protein phosphorylated amino acid binding;0.0198855143592732!GO:0042613;MHC class II protein complex;0.0199025043999719!GO:0006213;pyrimidine nucleoside metabolic process;0.0200901107307324!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0202328025821307!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0204747363911115!GO:0002819;regulation of adaptive immune response;0.0204747363911115!GO:0046578;regulation of Ras protein signal transduction;0.0206210790962258!GO:0031625;ubiquitin protein ligase binding;0.0208507886082245!GO:0051091;positive regulation of transcription factor activity;0.0208548340144333!GO:0006607;NLS-bearing substrate import into nucleus;0.0208548340144333!GO:0002444;myeloid leukocyte mediated immunity;0.0212608838388819!GO:0046519;sphingoid metabolic process;0.0214038898995991!GO:0030100;regulation of endocytosis;0.0214915728620681!GO:0006778;porphyrin metabolic process;0.0214915728620681!GO:0033013;tetrapyrrole metabolic process;0.0214915728620681!GO:0046467;membrane lipid biosynthetic process;0.0216531518343965!GO:0002448;mast cell mediated immunity;0.0217089332406212!GO:0043303;mast cell degranulation;0.0217089332406212!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0217187404522213!GO:0046983;protein dimerization activity;0.0221206820058175!GO:0050853;B cell receptor signaling pathway;0.0224888919982555!GO:0001516;prostaglandin biosynthetic process;0.0225736386949984!GO:0046457;prostanoid biosynthetic process;0.0225736386949984!GO:0051098;regulation of binding;0.0229272505700713!GO:0004672;protein kinase activity;0.0231150807893131!GO:0002440;production of molecular mediator of immune response;0.0237277614970447!GO:0045859;regulation of protein kinase activity;0.0238244826266878!GO:0009893;positive regulation of metabolic process;0.0239570477313871!GO:0002682;regulation of immune system process;0.0240004724264699!GO:0030522;intracellular receptor-mediated signaling pathway;0.0241204987948355!GO:0015923;mannosidase activity;0.0243419083276457!GO:0030131;clathrin adaptor complex;0.0243998211088071!GO:0050857;positive regulation of antigen receptor-mediated signaling pathway;0.0245846030623493!GO:0042990;regulation of transcription factor import into nucleus;0.0247151096087458!GO:0042991;transcription factor import into nucleus;0.0247151096087458!GO:0006783;heme biosynthetic process;0.0247544678360955!GO:0048500;signal recognition particle;0.0248457695240711!GO:0006740;NADPH regeneration;0.0248457695240711!GO:0006098;pentose-phosphate shunt;0.0248457695240711!GO:0045646;regulation of erythrocyte differentiation;0.025086430621623!GO:0007259;JAK-STAT cascade;0.0251861669450228!GO:0031294;lymphocyte costimulation;0.0253432292369209!GO:0031295;T cell costimulation;0.0253432292369209!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0253432292369209!GO:0006007;glucose catabolic process;0.0255789871432621!GO:0045113;regulation of integrin biosynthetic process;0.0255953784852279!GO:0045112;integrin biosynthetic process;0.0255953784852279!GO:0045637;regulation of myeloid cell differentiation;0.0260498063340691!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0262018043279511!GO:0006376;mRNA splice site selection;0.0264215660444626!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0264215660444626!GO:0008333;endosome to lysosome transport;0.0265438486963874!GO:0008629;induction of apoptosis by intracellular signals;0.0265950345029156!GO:0016251;general RNA polymerase II transcription factor activity;0.0271286504713013!GO:0015631;tubulin binding;0.0271607524607071!GO:0002218;activation of innate immune response;0.0271607524607071!GO:0002758;innate immune response-activating signal transduction;0.0271607524607071!GO:0004177;aminopeptidase activity;0.0275822534769725!GO:0050727;regulation of inflammatory response;0.0275865765731198!GO:0031347;regulation of defense response;0.0275865765731198!GO:0046979;TAP2 binding;0.0276161428140714!GO:0046977;TAP binding;0.0276161428140714!GO:0046978;TAP1 binding;0.0276161428140714!GO:0007040;lysosome organization and biogenesis;0.0276676475490348!GO:0045121;lipid raft;0.0277587257096472!GO:0030176;integral to endoplasmic reticulum membrane;0.0278434467015977!GO:0051881;regulation of mitochondrial membrane potential;0.0278434467015977!GO:0043304;regulation of mast cell degranulation;0.0281485951619755!GO:0043235;receptor complex;0.0285467985934092!GO:0006355;regulation of transcription, DNA-dependent;0.0286019448795874!GO:0030132;clathrin coat of coated pit;0.0289070295160599!GO:0035258;steroid hormone receptor binding;0.0291471883807199!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.029316141796885!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.029316141796885!GO:0051056;regulation of small GTPase mediated signal transduction;0.0295316454638762!GO:0002253;activation of immune response;0.0295573021954587!GO:0002467;germinal center formation;0.0299760413428507!GO:0006260;DNA replication;0.0300410316286057!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0300649729656668!GO:0046489;phosphoinositide biosynthetic process;0.0302165280098516!GO:0019863;IgE binding;0.0302165280098516!GO:0032763;regulation of mast cell cytokine production;0.0303998291120276!GO:0032762;mast cell cytokine production;0.0303998291120276!GO:0000209;protein polyubiquitination;0.030538005120043!GO:0006414;translational elongation;0.0305382118490415!GO:0019318;hexose metabolic process;0.0308729194001451!GO:0002449;lymphocyte mediated immunity;0.0315186366599427!GO:0030027;lamellipodium;0.0321543340260415!GO:0000278;mitotic cell cycle;0.0327744330688529!GO:0031098;stress-activated protein kinase signaling pathway;0.0328643225969871!GO:0005484;SNAP receptor activity;0.0330571971908273!GO:0006779;porphyrin biosynthetic process;0.0331108981120004!GO:0033014;tetrapyrrole biosynthetic process;0.0331108981120004!GO:0015630;microtubule cytoskeleton;0.0332076021628154!GO:0006338;chromatin remodeling;0.0335901336585364!GO:0006383;transcription from RNA polymerase III promoter;0.0338349653413!GO:0019864;IgG binding;0.0338349653413!GO:0006352;transcription initiation;0.0339742772864035!GO:0019901;protein kinase binding;0.0343653643198412!GO:0000303;response to superoxide;0.0346264826796559!GO:0007266;Rho protein signal transduction;0.0346989812793792!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0347021932815991!GO:0009165;nucleotide biosynthetic process;0.0347118156752935!GO:0002237;response to molecule of bacterial origin;0.0347118156752935!GO:0001784;phosphotyrosine binding;0.0351311654172389!GO:0046824;positive regulation of nucleocytoplasmic transport;0.0355436040675227!GO:0051789;response to protein stimulus;0.0362232667228174!GO:0006986;response to unfolded protein;0.0362232667228174!GO:0030125;clathrin vesicle coat;0.0363917084922325!GO:0030665;clathrin coated vesicle membrane;0.0363917084922325!GO:0016311;dephosphorylation;0.0363917084922325!GO:0030098;lymphocyte differentiation;0.0369969816351843!GO:0000786;nucleosome;0.037611890031524!GO:0043621;protein self-association;0.0378299481922974!GO:0003899;DNA-directed RNA polymerase activity;0.0381164911539984!GO:0004718;Janus kinase activity;0.0381359380374705!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0381418876281365!GO:0017166;vinculin binding;0.0382992083832955!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0390328437102217!GO:0045047;protein targeting to ER;0.0390328437102217!GO:0005996;monosaccharide metabolic process;0.039209668611239!GO:0008625;induction of apoptosis via death domain receptors;0.0394218551939002!GO:0032760;positive regulation of tumor necrosis factor production;0.039751514140089!GO:0043405;regulation of MAP kinase activity;0.0399860155880781!GO:0009897;external side of plasma membrane;0.0399860155880781!GO:0000059;protein import into nucleus, docking;0.039992858418529!GO:0003746;translation elongation factor activity;0.0406468673666095!GO:0030663;COPI coated vesicle membrane;0.0412148412119715!GO:0030126;COPI vesicle coat;0.0412148412119715!GO:0007006;mitochondrial membrane organization and biogenesis;0.0412148412119715!GO:0005938;cell cortex;0.0413730680019782!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0420050387838111!GO:0050776;regulation of immune response;0.0423838853955461!GO:0032640;tumor necrosis factor production;0.0429339489158953!GO:0030137;COPI-coated vesicle;0.042990652505778!GO:0033367;protein localization in mast cell secretory granule;0.0434444542133718!GO:0033365;protein localization in organelle;0.0434444542133718!GO:0033371;T cell secretory granule organization and biogenesis;0.0434444542133718!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0434444542133718!GO:0033375;protease localization in T cell secretory granule;0.0434444542133718!GO:0042629;mast cell granule;0.0434444542133718!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0434444542133718!GO:0033364;mast cell secretory granule organization and biogenesis;0.0434444542133718!GO:0033380;granzyme B localization in T cell secretory granule;0.0434444542133718!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0434444542133718!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0434444542133718!GO:0033368;protease localization in mast cell secretory granule;0.0434444542133718!GO:0033366;protein localization in secretory granule;0.0434444542133718!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0434444542133718!GO:0033374;protein localization in T cell secretory granule;0.0434444542133718!GO:0043507;positive regulation of JNK activity;0.0444379323850299!GO:0042288;MHC class I protein binding;0.044464472567927!GO:0048872;homeostasis of number of cells;0.0446588578725861!GO:0008383;manganese superoxide dismutase activity;0.0452894517970406!GO:0001315;age-dependent response to reactive oxygen species;0.0452894517970406!GO:0006405;RNA export from nucleus;0.0456521068407296!GO:0016504;protease activator activity;0.0462570190443002!GO:0002250;adaptive immune response;0.0462570190443002!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0462570190443002!GO:0045621;positive regulation of lymphocyte differentiation;0.0471971644803494!GO:0032386;regulation of intracellular transport;0.0478360096901517!GO:0050671;positive regulation of lymphocyte proliferation;0.0478360096901517!GO:0032946;positive regulation of mononuclear cell proliferation;0.0478360096901517!GO:0030833;regulation of actin filament polymerization;0.0480138330510495!GO:0000165;MAPKKK cascade;0.0480138330510495!GO:0040029;regulation of gene expression, epigenetic;0.0483426686706746!GO:0002483;antigen processing and presentation of endogenous peptide antigen;0.0483426686706746!GO:0019885;antigen processing and presentation of endogenous peptide antigen via MHC class I;0.0483426686706746!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0485491352071702!GO:0019220;regulation of phosphate metabolic process;0.0485633563325191!GO:0051174;regulation of phosphorus metabolic process;0.0485633563325191!GO:0008017;microtubule binding;0.0485633563325191!GO:0005669;transcription factor TFIID complex;0.0485633563325191!GO:0002684;positive regulation of immune system process;0.049250827596689!GO:0051087;chaperone binding;0.0492849550559828!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0493006779855698 | |||
|sample_id=12181 | |sample_id=12181 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=GATA6:3.60081030334;FOXO1,3,4:2.72126461122;FOXD3:2.27381208158;SPI1:2.26754567866;TOPORS:2.22056175066;ETS1,2:2.2173054452;SPIB:2.07972117766;ELF1,2,4:1.8325127222;RUNX1..3:1.72825577137;FOX{F1,F2,J1}:1.67075339677;DMAP1_NCOR{1,2}_SMARC:1.59546627006;NANOG{mouse}:1.5757638099;FOX{D1,D2}:1.55309084997;FOXP3:1.46342515848;T:1.45465930236;TFAP4:1.43011398649;STAT5{A,B}:1.31067636867;SPZ1:1.29224030041;STAT1,3:1.26914429856;IRF7:1.22397442636;ALX1:1.19585321848;CDX1,2,4:1.15749121509;BPTF:1.13521749554;IKZF2:1.06224908813;HMX1:1.03178414437;IRF1,2:0.97247643086;CEBPA,B_DDIT3:0.939105119922;POU5F1:0.938700659944;TLX2:0.933226513877;TFCP2:0.924405379894;FOXP1:0.907952316601;ZNF148:0.898961311717;PITX1..3:0.859418417286;POU2F1..3:0.814862426052;RXRA_VDR{dimer}:0.803461711816;MYFfamily:0.764804177428;EVI1:0.670457054138;SMAD1..7,9:0.620009498392;NR1H4:0.59988905871;FOXN1:0.554331670555;PAX3,7:0.538444841771;RREB1:0.532639248961;STAT2,4,6:0.531670681327;EP300:0.517300042397;NFE2L2:0.502949272872;ZNF423:0.499409968893;PDX1:0.483779419549;TGIF1:0.452489185438;NR6A1:0.444479684889;NFIL3:0.439527026369;FOXA2:0.43895881978;NKX2-2,8:0.429908786184;MYOD1:0.419183309108;SREBF1,2:0.411752731476;PAX2:0.401636807928;MZF1:0.331560345223;NFATC1..3:0.243319527723;MAZ:0.237363466651;NKX3-2:0.227530658778;BREu{core}:0.223782103753;ZEB1:0.179196657423;LMO2:0.174553134867;RFX2..5_RFXANK_RFXAP:0.163877903376;CUX2:0.0963289040112;AIRE:0.0948210760625;GATA4:0.0938462185857;SNAI1..3:0.0868640157596;CRX:0.0736692351299;OCT4_SOX2{dimer}:0.0729499418848;XCPE1{core}:0.0590018692361;ZBTB16:0.0186804475228;PPARG:0.0165255944903;NFIX:-0.0117411556101;ZNF238:-0.0210377736146;TAL1_TCF{3,4,12}:-0.0366726849286;NFKB1_REL_RELA:-0.0648097474932;ATF5_CREB3:-0.0957545467742;GLI1..3:-0.103899688481;HBP1_HMGB_SSRP1_UBTF:-0.110272326943;NKX3-1:-0.119270980001;MYB:-0.135042421373;FOX{I1,J2}:-0.143485216508;ALX4:-0.153530833489;SRF:-0.185067992211;SP1:-0.225484239274;NFE2:-0.230264745857;REST:-0.244809022826;RBPJ:-0.28249769634;CREB1:-0.31998655435;DBP:-0.331981068089;HLF:-0.335090915423;POU1F1:-0.385116550642;KLF4:-0.423730103176;TFAP2{A,C}:-0.442364559841;NR5A1,2:-0.471136048368;PATZ1:-0.491673895961;HNF4A_NR2F1,2:-0.496442167026;NKX2-1,4:-0.509275143896;NHLH1,2:-0.511562978241;ZFP161:-0.529545997593;NKX6-1,2:-0.545913133062;RXR{A,B,G}:-0.562844893391;ATF2:-0.574893096429;BACH2:-0.579226702396;MTF1:-0.581952852381;ESR1:-0.651649514966;PAX4:-0.659455572257;EGR1..3:-0.667895023607;PBX1:-0.696948580112;POU3F1..4:-0.704972625154;FOSL2:-0.715924674851;GTF2I:-0.716101332986;TFAP2B:-0.721990341985;ARID5B:-0.740750163444;PRDM1:-0.748552567958;FOS_FOS{B,L1}_JUN{B,D}:-0.751041377671;UFEwm:-0.751654498154;ELK1,4_GABP{A,B1}:-0.754116623361;NFE2L1:-0.755249344609;HOXA9_MEIS1:-0.755855452551;HIC1:-0.761923921782;LEF1_TCF7_TCF7L1,2:-0.788741914689;HNF1A:-0.789180087446;MED-1{core}:-0.797297471725;AR:-0.844063464736;RFX1:-0.877362331203;TBX4,5:-0.884581775155;YY1:-0.895274945052;MAFB:-0.921967702437;NR3C1:-0.965304297336;ZNF143:-0.966597632507;MEF2{A,B,C,D}:-0.986673374845;PRRX1,2:-0.995394889896;FOXQ1:-1.00392536923;JUN:-1.02160709189;MTE{core}:-1.0294138575;GZF1:-1.04846556176;SOX5:-1.05481799278;ATF4:-1.06945893125;POU6F1:-1.07775440434;PAX6:-1.11323697411;ADNP_IRX_SIX_ZHX:-1.11732616312;NRF1:-1.151783637;TLX1..3_NFIC{dimer}:-1.16641114457;NFY{A,B,C}:-1.18585049551;RORA:-1.21215985281;E2F1..5:-1.22545662967;TBP:-1.24402268163;HAND1,2:-1.25999507858;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.26542553485;SOX2:-1.27816068364;EN1,2:-1.27861374169;NKX2-3_NKX2-5:-1.30873765153;HES1:-1.31395724545;ZBTB6:-1.31678375922;HMGA1,2:-1.32696795061;EBF1:-1.33255222871;LHX3,4:-1.34361898891;ZIC1..3:-1.35230031497;GCM1,2:-1.35680368209;VSX1,2:-1.37455874238;ZNF384:-1.37580543965;SOX{8,9,10}:-1.39437541587;XBP1:-1.40165476144;GFI1:-1.42332786491;TP53:-1.4508285208;PAX5:-1.45138913926;FOXL1:-1.48606189551;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.5193882242;HIF1A:-1.58111757664;ONECUT1,2:-1.59689993795;AHR_ARNT_ARNT2:-1.6222686073;PAX8:-1.62934815754;GTF2A1,2:-1.63394109827;NANOG:-1.66881977415;TEAD1:-1.69205273096;FOXM1:-1.69962340949;GFI1B:-1.74381449236;ESRRA:-1.77468695791;MYBL2:-1.78234894449;HOX{A4,D4}:-1.79510269469;HOX{A6,A7,B6,B7}:-1.83287175377;HOX{A5,B5}:-1.95544094491;CDC5L:-2.05387101984;ATF6:-2.06303052188;HSF1,2:-2.07506958709;bHLH_family:-2.20971444287;PAX1,9:-2.37268258866;TFDP1:-2.37981177561;SOX17:-2.62151506916;TEF:-2.63285698698;IKZF1:-2.72344718941 | |top_motifs=GATA6:3.60081030334;FOXO1,3,4:2.72126461122;FOXD3:2.27381208158;SPI1:2.26754567866;TOPORS:2.22056175066;ETS1,2:2.2173054452;SPIB:2.07972117766;ELF1,2,4:1.8325127222;RUNX1..3:1.72825577137;FOX{F1,F2,J1}:1.67075339677;DMAP1_NCOR{1,2}_SMARC:1.59546627006;NANOG{mouse}:1.5757638099;FOX{D1,D2}:1.55309084997;FOXP3:1.46342515848;T:1.45465930236;TFAP4:1.43011398649;STAT5{A,B}:1.31067636867;SPZ1:1.29224030041;STAT1,3:1.26914429856;IRF7:1.22397442636;ALX1:1.19585321848;CDX1,2,4:1.15749121509;BPTF:1.13521749554;IKZF2:1.06224908813;HMX1:1.03178414437;IRF1,2:0.97247643086;CEBPA,B_DDIT3:0.939105119922;POU5F1:0.938700659944;TLX2:0.933226513877;TFCP2:0.924405379894;FOXP1:0.907952316601;ZNF148:0.898961311717;PITX1..3:0.859418417286;POU2F1..3:0.814862426052;RXRA_VDR{dimer}:0.803461711816;MYFfamily:0.764804177428;EVI1:0.670457054138;SMAD1..7,9:0.620009498392;NR1H4:0.59988905871;FOXN1:0.554331670555;PAX3,7:0.538444841771;RREB1:0.532639248961;STAT2,4,6:0.531670681327;EP300:0.517300042397;NFE2L2:0.502949272872;ZNF423:0.499409968893;PDX1:0.483779419549;TGIF1:0.452489185438;NR6A1:0.444479684889;NFIL3:0.439527026369;FOXA2:0.43895881978;NKX2-2,8:0.429908786184;MYOD1:0.419183309108;SREBF1,2:0.411752731476;PAX2:0.401636807928;MZF1:0.331560345223;NFATC1..3:0.243319527723;MAZ:0.237363466651;NKX3-2:0.227530658778;BREu{core}:0.223782103753;ZEB1:0.179196657423;LMO2:0.174553134867;RFX2..5_RFXANK_RFXAP:0.163877903376;CUX2:0.0963289040112;AIRE:0.0948210760625;GATA4:0.0938462185857;SNAI1..3:0.0868640157596;CRX:0.0736692351299;OCT4_SOX2{dimer}:0.0729499418848;XCPE1{core}:0.0590018692361;ZBTB16:0.0186804475228;PPARG:0.0165255944903;NFIX:-0.0117411556101;ZNF238:-0.0210377736146;TAL1_TCF{3,4,12}:-0.0366726849286;NFKB1_REL_RELA:-0.0648097474932;ATF5_CREB3:-0.0957545467742;GLI1..3:-0.103899688481;HBP1_HMGB_SSRP1_UBTF:-0.110272326943;NKX3-1:-0.119270980001;MYB:-0.135042421373;FOX{I1,J2}:-0.143485216508;ALX4:-0.153530833489;SRF:-0.185067992211;SP1:-0.225484239274;NFE2:-0.230264745857;REST:-0.244809022826;RBPJ:-0.28249769634;CREB1:-0.31998655435;DBP:-0.331981068089;HLF:-0.335090915423;POU1F1:-0.385116550642;KLF4:-0.423730103176;TFAP2{A,C}:-0.442364559841;NR5A1,2:-0.471136048368;PATZ1:-0.491673895961;HNF4A_NR2F1,2:-0.496442167026;NKX2-1,4:-0.509275143896;NHLH1,2:-0.511562978241;ZFP161:-0.529545997593;NKX6-1,2:-0.545913133062;RXR{A,B,G}:-0.562844893391;ATF2:-0.574893096429;BACH2:-0.579226702396;MTF1:-0.581952852381;ESR1:-0.651649514966;PAX4:-0.659455572257;EGR1..3:-0.667895023607;PBX1:-0.696948580112;POU3F1..4:-0.704972625154;FOSL2:-0.715924674851;GTF2I:-0.716101332986;TFAP2B:-0.721990341985;ARID5B:-0.740750163444;PRDM1:-0.748552567958;FOS_FOS{B,L1}_JUN{B,D}:-0.751041377671;UFEwm:-0.751654498154;ELK1,4_GABP{A,B1}:-0.754116623361;NFE2L1:-0.755249344609;HOXA9_MEIS1:-0.755855452551;HIC1:-0.761923921782;LEF1_TCF7_TCF7L1,2:-0.788741914689;HNF1A:-0.789180087446;MED-1{core}:-0.797297471725;AR:-0.844063464736;RFX1:-0.877362331203;TBX4,5:-0.884581775155;YY1:-0.895274945052;MAFB:-0.921967702437;NR3C1:-0.965304297336;ZNF143:-0.966597632507;MEF2{A,B,C,D}:-0.986673374845;PRRX1,2:-0.995394889896;FOXQ1:-1.00392536923;JUN:-1.02160709189;MTE{core}:-1.0294138575;GZF1:-1.04846556176;SOX5:-1.05481799278;ATF4:-1.06945893125;POU6F1:-1.07775440434;PAX6:-1.11323697411;ADNP_IRX_SIX_ZHX:-1.11732616312;NRF1:-1.151783637;TLX1..3_NFIC{dimer}:-1.16641114457;NFY{A,B,C}:-1.18585049551;RORA:-1.21215985281;E2F1..5:-1.22545662967;TBP:-1.24402268163;HAND1,2:-1.25999507858;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.26542553485;SOX2:-1.27816068364;EN1,2:-1.27861374169;NKX2-3_NKX2-5:-1.30873765153;HES1:-1.31395724545;ZBTB6:-1.31678375922;HMGA1,2:-1.32696795061;EBF1:-1.33255222871;LHX3,4:-1.34361898891;ZIC1..3:-1.35230031497;GCM1,2:-1.35680368209;VSX1,2:-1.37455874238;ZNF384:-1.37580543965;SOX{8,9,10}:-1.39437541587;XBP1:-1.40165476144;GFI1:-1.42332786491;TP53:-1.4508285208;PAX5:-1.45138913926;FOXL1:-1.48606189551;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.5193882242;HIF1A:-1.58111757664;ONECUT1,2:-1.59689993795;AHR_ARNT_ARNT2:-1.6222686073;PAX8:-1.62934815754;GTF2A1,2:-1.63394109827;NANOG:-1.66881977415;TEAD1:-1.69205273096;FOXM1:-1.69962340949;GFI1B:-1.74381449236;ESRRA:-1.77468695791;MYBL2:-1.78234894449;HOX{A4,D4}:-1.79510269469;HOX{A6,A7,B6,B7}:-1.83287175377;HOX{A5,B5}:-1.95544094491;CDC5L:-2.05387101984;ATF6:-2.06303052188;HSF1,2:-2.07506958709;bHLH_family:-2.20971444287;PAX1,9:-2.37268258866;TFDP1:-2.37981177561;SOX17:-2.62151506916;TEF:-2.63285698698;IKZF1:-2.72344718941 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12181-129A3;search_select_hide=table117:FF:12181-129A3 | |||
}} | }} | ||
Latest revision as of 18:33, 4 June 2020
| Name: | Whole blood (ribopure), donor090309, donation3 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11948,RDhi10002 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11948
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11948
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.134 |
| 10 | 10 | 0.0499 |
| 100 | 100 | 0.643 |
| 101 | 101 | 0.181 |
| 102 | 102 | 0.504 |
| 103 | 103 | 0.339 |
| 104 | 104 | 0.717 |
| 105 | 105 | 0.349 |
| 106 | 106 | 0.0131 |
| 107 | 107 | 0.429 |
| 108 | 108 | 0.993 |
| 109 | 109 | 0.133 |
| 11 | 11 | 0.0808 |
| 110 | 110 | 0.347 |
| 111 | 111 | 0.255 |
| 112 | 112 | 0.0919 |
| 113 | 113 | 0.169 |
| 114 | 114 | 0.0444 |
| 115 | 115 | 0.634 |
| 116 | 116 | 0.604 |
| 117 | 117 | 0.0323 |
| 118 | 118 | 0.269 |
| 119 | 119 | 0.33 |
| 12 | 12 | 0.361 |
| 120 | 120 | 0.415 |
| 121 | 121 | 0.953 |
| 122 | 122 | 0.577 |
| 123 | 123 | 0.00978 |
| 124 | 124 | 0.267 |
| 125 | 125 | 0.203 |
| 126 | 126 | 0.547 |
| 127 | 127 | 0.276 |
| 128 | 128 | 0.0155 |
| 129 | 129 | 0.614 |
| 13 | 13 | 0.95 |
| 130 | 130 | 0.426 |
| 131 | 131 | 0.974 |
| 132 | 132 | 0.655 |
| 133 | 133 | 0.859 |
| 134 | 134 | 0.911 |
| 135 | 135 | 0.415 |
| 136 | 136 | 0.98 |
| 137 | 137 | 0.0112 |
| 138 | 138 | 0.048 |
| 139 | 139 | 0.00933 |
| 14 | 14 | 0.161 |
| 140 | 140 | 0.211 |
| 141 | 141 | 0.43 |
| 142 | 142 | 0.742 |
| 143 | 143 | 0.00313 |
| 144 | 144 | 0.614 |
| 145 | 145 | 0.166 |
| 146 | 146 | 0.968 |
| 147 | 147 | 0.131 |
| 148 | 148 | 0.0927 |
| 149 | 149 | 0.472 |
| 15 | 15 | 0.0776 |
| 150 | 150 | 0.747 |
| 151 | 151 | 0.195 |
| 152 | 152 | 0.194 |
| 153 | 153 | 0.515 |
| 154 | 154 | 0.74 |
| 155 | 155 | 0.253 |
| 156 | 156 | 0.756 |
| 157 | 157 | 0.268 |
| 158 | 158 | 0.471 |
| 159 | 159 | 0.187 |
| 16 | 16 | 0.363 |
| 160 | 160 | 0.453 |
| 161 | 161 | 0.226 |
| 162 | 162 | 0.861 |
| 163 | 163 | 0.472 |
| 164 | 164 | 0.183 |
| 165 | 165 | 0.109 |
| 166 | 166 | 0.86 |
| 167 | 167 | 0.846 |
| 168 | 168 | 0.237 |
| 169 | 169 | 0.0136 |
| 17 | 17 | 0.375 |
| 18 | 18 | 0.558 |
| 19 | 19 | 0.226 |
| 2 | 2 | 0.207 |
| 20 | 20 | 0.663 |
| 21 | 21 | 0.187 |
| 22 | 22 | 0.217 |
| 23 | 23 | 0.107 |
| 24 | 24 | 0.049 |
| 25 | 25 | 0.32 |
| 26 | 26 | 0.141 |
| 27 | 27 | 0.102 |
| 28 | 28 | 0.536 |
| 29 | 29 | 0.507 |
| 3 | 3 | 0.0644 |
| 30 | 30 | 0.863 |
| 31 | 31 | 0.545 |
| 32 | 32 | 0.966 |
| 33 | 33 | 0.75 |
| 34 | 34 | 0.247 |
| 35 | 35 | 0.2 |
| 36 | 36 | 0.51 |
| 37 | 37 | 0.153 |
| 38 | 38 | 0.362 |
| 39 | 39 | 0.943 |
| 4 | 4 | 0.79 |
| 40 | 40 | 0.471 |
| 41 | 41 | 0.257 |
| 42 | 42 | 0.247 |
| 43 | 43 | 0.146 |
| 44 | 44 | 0.207 |
| 45 | 45 | 0.523 |
| 46 | 46 | 0.0785 |
| 47 | 47 | 0.154 |
| 48 | 48 | 0.263 |
| 49 | 49 | 0.105 |
| 5 | 5 | 0.339 |
| 50 | 50 | 0.88 |
| 51 | 51 | 0.389 |
| 52 | 52 | 0.454 |
| 53 | 53 | 0.098 |
| 54 | 54 | 0.265 |
| 55 | 55 | 0.0867 |
| 56 | 56 | 0.301 |
| 57 | 57 | 0.628 |
| 58 | 58 | 0.0845 |
| 59 | 59 | 0.0533 |
| 6 | 6 | 0.751 |
| 60 | 60 | 0.0635 |
| 61 | 61 | 0.275 |
| 62 | 62 | 0.0213 |
| 63 | 63 | 0.527 |
| 64 | 64 | 0.313 |
| 65 | 65 | 0.184 |
| 66 | 66 | 0.347 |
| 67 | 67 | 0.179 |
| 68 | 68 | 0.552 |
| 69 | 69 | 0.178 |
| 7 | 7 | 0.284 |
| 70 | 70 | 0.063 |
| 71 | 71 | 0.114 |
| 72 | 72 | 0.248 |
| 73 | 73 | 0.231 |
| 74 | 74 | 0.986 |
| 75 | 75 | 0.0904 |
| 76 | 76 | 0.433 |
| 77 | 77 | 0.495 |
| 78 | 78 | 0.328 |
| 79 | 79 | 0.567 |
| 8 | 8 | 0.294 |
| 80 | 80 | 0.121 |
| 81 | 81 | 0.224 |
| 82 | 82 | 0.0152 |
| 83 | 83 | 0.481 |
| 84 | 84 | 0.195 |
| 85 | 85 | 0.165 |
| 86 | 86 | 0.127 |
| 87 | 87 | 0.556 |
| 88 | 88 | 0.712 |
| 89 | 89 | 0.546 |
| 9 | 9 | 0.282 |
| 90 | 90 | 0.0174 |
| 91 | 91 | 0.32 |
| 92 | 92 | 0.0559 |
| 93 | 93 | 0.478 |
| 94 | 94 | 0.201 |
| 95 | 95 | 0.322 |
| 96 | 96 | 0.068 |
| 97 | 97 | 0.671 |
| 98 | 98 | 0.0297 |
| 99 | 99 | 0.661 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11948
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000281 human whole blood sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000178 (blood)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0010053 (human blood - adult sample)
0000004 (tissue sample)
0000281 (human whole blood sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
