FFCP PHASE1:Mm9::chr18:25913004..25913008,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=392 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:25913004..25913008,+ | |||
|description=CAGE_peak_at_chr18:25913004..25913008,+ | |description=CAGE_peak_at_chr18:25913004..25913008,+ | ||
|id=chr18:25913004..25913008,+ | |id=chr18:25913004..25913008,+ | ||
|ontology_enrichment_celltype=CL:0000540!3.53e-23!33;CL:0000047!3.53e-23!33;CL:0000031!3.53e-23!33;CL:0000404!3.53e-23!33;CL:0000393!1.42e-18!39;CL:0000211!1.42e-18!39;CL:0002319!3.14e-16!43;CL:0000221!1.04e-15!44;CL:0000133!1.04e-15!44;CL:0000117!3.54e-14!23;CL:0000337!3.54e-14!23;CL:0000055!4.78e-13!50;CL:0000107!1.55e-11!9;CL:0002321!1.62e-08!70;CL:0000220!1.62e-08!70 | |ontology_enrichment_celltype=CL:0000540!3.53e-23!33;CL:0000047!3.53e-23!33;CL:0000031!3.53e-23!33;CL:0000404!3.53e-23!33;CL:0000393!1.42e-18!39;CL:0000211!1.42e-18!39;CL:0002319!3.14e-16!43;CL:0000221!1.04e-15!44;CL:0000133!1.04e-15!44;CL:0000117!3.54e-14!23;CL:0000337!3.54e-14!23;CL:0000055!4.78e-13!50;CL:0000107!1.55e-11!9;CL:0002321!1.62e-08!70;CL:0000220!1.62e-08!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.84e-17,23;CL:0000337,2.84e-17,23;CL:0002608,7.42e-16,3;CL:0000120,1.73e-15,3;CL:0002613,1.73e-15,3;CL:0000540,4.45e-12,33;CL:0000047,4.45e-12,33;CL:0000031,4.45e-12,33;CL:0000404,4.45e-12,33;CL:0000393,3.13e-10,39;CL:0000211,3.13e-10,39;CL:0002319,2.78e-09,43;CL:0000221,4.52e-09,44;CL:0000133,4.52e-09,44;CL:0002609,2.07e-08,6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.09e-23!73;UBERON:0005743!6.09e-23!73;UBERON:0000073!4.60e-22!75;UBERON:0001016!4.60e-22!75;UBERON:0004121!4.66e-20!102;UBERON:0000924!4.66e-20!102;UBERON:0006601!4.66e-20!102;UBERON:0002346!1.79e-16!71;UBERON:0003075!1.79e-16!71;UBERON:0007284!1.79e-16!71;UBERON:0003056!7.89e-16!49;UBERON:0002020!1.28e-14!34;UBERON:0000033!2.95e-14!63;UBERON:0001049!1.77e-13!52;UBERON:0005068!1.77e-13!52;UBERON:0006241!1.77e-13!52;UBERON:0007135!1.77e-13!52;UBERON:0002616!2.04e-13!49;UBERON:0003080!3.56e-13!40;UBERON:0000955!5.10e-13!50;UBERON:0006238!5.10e-13!50;UBERON:0002791!1.07e-12!29;UBERON:0003528!1.07e-12!29;UBERON:0001893!1.07e-12!29;UBERON:0002780!2.70e-12!39;UBERON:0001890!2.70e-12!39;UBERON:0006240!2.70e-12!39;UBERON:0002410!1.55e-11!9;UBERON:0002619!3.48e-11!17;UBERON:0000956!3.21e-10!21;UBERON:0001869!3.21e-10!21;UBERON:0000203!3.21e-10!21;UBERON:0000010!3.93e-09!11;UBERON:0007811!1.80e-08!86;UBERON:0002021!1.82e-08!10;UBERON:0000411!1.82e-08!10;UBERON:0001950!1.82e-08!10;UBERON:0000153!3.71e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003528,1.05e-13,29;UBERON:0002791,1.05e-13,29;UBERON:0001893,1.05e-13,29;UBERON:0002020,1.05e-11,34;UBERON:0002619,8.63e-11,17;UBERON:0002780,3.26e-10,39;UBERON:0001890,3.26e-10,39;UBERON:0006240,3.26e-10,39;UBERON:0003080,5.85e-10,40;UBERON:0000369,1.09e-09,5;UBERON:0002435,1.09e-09,5;UBERON:0000204,1.09e-09,5;UBERON:0010082,1.09e-09,5;UBERON:0001017,1.46e-09,73;UBERON:0001016,2.65e-09,75;UBERON:0000956,8.25e-09,21;UBERON:0001869,8.25e-09,21;UBERON:0000203,8.25e-09,21;UBERON:0002616,1.16e-08,46;UBERON:0000955,1.77e-08,47;UBERON:0006238,1.77e-08,47;UBERON:0003056,3.93e-08,49;UBERON:0001049,1.16e-07,52;UBERON:0005068,1.16e-07,52;UBERON:0006241,1.16e-07,52;UBERON:0007135,1.16e-07,52;UBERON:0000073,2.24e-07,54;UBERON:0001954,2.46e-07,7;UBERON:0003022,2.46e-07,7;UBERON:0002421,2.46e-07,7;UBERON:0000349,2.46e-07,7;UBERON:0002600,2.46e-07,7;UBERON:0004121,2.60e-07,95;UBERON:0000924,2.60e-07,95;UBERON:0006601,2.60e-07,95 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21389876515759,0,3.1691570175309,0,0,0,0,0,0,0,0,0,0.420649922702764,0,0.220868540951614,0.489963196859816,2.58782771749238,4.5960939330501,0,0.255374676170375,0.307213066512487,0.263772575460388,3.29355516968675,1.04182674111352,0,0,0.763991238884051,0,0.142371680799103,0.372798891650601,0,0,0.579728977403356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150722640552623,0,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.149790639404823,0,0,0,0,0.62336413367868,0,0.101839363850316,0,0,0,0.130120442962704,0,0,0,0.0680364991513279,0.12811372028485,0.0937017245597288,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315508219416257,0.390438744296638,0,0.477937595905104,0.891194696329576,0.566153061577665,0.404810701674894,0.292255857911312,0.790575555893047,0,0,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0,0,0.388076051348264,0.214337035031592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0.218362563746178,0,0,0,0,0,0,0,0,0.194451188344048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0.515559547031063,0.685082519770642,1.5107877947794,0.675022500231806,0,1.81256963593682,0.51776031175182,0,0,0.170733605754134,0,0,0,0,0,0.320919209591815,0,0,0,0,0,0.114870937911227,0,0.115884325944855,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21389876515759,0,3.1691570175309,0,0,0,0,0,0,0,0,0,0.420649922702764,0,0.220868540951614,0.489963196859816,2.58782771749238,4.5960939330501,0,0.255374676170375,0.307213066512487,0.263772575460388,3.29355516968675,1.04182674111352,0,0,0.763991238884051,0,0.142371680799103,0.372798891650601,0,0,0.579728977403356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150722640552623,0,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.149790639404823,0,0,0,0,0.62336413367868,0,0.101839363850316,0,0,0,0.130120442962704,0,0,0,0.0680364991513279,0.12811372028485,0.0937017245597288,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315508219416257,0.390438744296638,0,0.477937595905104,0.891194696329576,0.566153061577665,0.404810701674894,0.292255857911312,0.790575555893047,0,0,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0,0,0.388076051348264,0.214337035031592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0.218362563746178,0,0,0,0,0,0,0,0,0.194451188344048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0.515559547031063,0.685082519770642,1.5107877947794,0.675022500231806,0,1.81256963593682,0.51776031175182,0,0,0.170733605754134,0,0,0,0,0,0.320919209591815,0,0,0,0,0,0.114870937911227,0,0.115884325944855,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr18:25913004..25913008,+ | |short_description=p@chr18:25913004..25913008,+ | ||
}} | }} |
Latest revision as of 14:56, 5 August 2015
Short description: | p@chr18:25913004..25913008, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr18:25913004..25913008, + |
Coexpression cluster: | MCL_coexpression_mm9:392 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.84e-17 | 23 |
neuroblast (sensu Vertebrata) | 2.84e-17 | 23 |
hippocampal neuron | 7.42e-16 | 3 |
granule cell | 1.73e-15 | 3 |
striatum neuron | 1.73e-15 | 3 |
neuron | 4.45e-12 | 33 |
neuronal stem cell | 4.45e-12 | 33 |
neuroblast | 4.45e-12 | 33 |
electrically signaling cell | 4.45e-12 | 33 |
electrically responsive cell | 3.13e-10 | 39 |
electrically active cell | 3.13e-10 | 39 |
neural cell | 2.78e-09 | 43 |
ectodermal cell | 4.52e-09 | 44 |
neurectodermal cell | 4.52e-09 | 44 |
neuron of cerebral cortex | 2.07e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
brain grey matter | 1.05e-13 | 29 |
regional part of telencephalon | 1.05e-13 | 29 |
telencephalon | 1.05e-13 | 29 |
gray matter | 1.05e-11 | 34 |
regional part of cerebral cortex | 8.63e-11 | 17 |
regional part of forebrain | 3.26e-10 | 39 |
forebrain | 3.26e-10 | 39 |
future forebrain | 3.26e-10 | 39 |
anterior neural tube | 5.85e-10 | 40 |
corpus striatum | 1.09e-09 | 5 |
striatum | 1.09e-09 | 5 |
ventral part of telencephalon | 1.09e-09 | 5 |
future corpus striatum | 1.09e-09 | 5 |
central nervous system | 1.46e-09 | 73 |
nervous system | 2.65e-09 | 75 |
cerebral cortex | 8.25e-09 | 21 |
cerebral hemisphere | 8.25e-09 | 21 |
pallium | 8.25e-09 | 21 |
regional part of brain | 1.16e-08 | 46 |
brain | 1.77e-08 | 47 |
future brain | 1.77e-08 | 47 |
pre-chordal neural plate | 3.93e-08 | 49 |
neural tube | 1.16e-07 | 52 |
neural rod | 1.16e-07 | 52 |
future spinal cord | 1.16e-07 | 52 |
neural keel | 1.16e-07 | 52 |
regional part of nervous system | 2.24e-07 | 54 |
Ammon's horn | 2.46e-07 | 7 |
lobe parts of cerebral cortex | 2.46e-07 | 7 |
hippocampal formation | 2.46e-07 | 7 |
limbic system | 2.46e-07 | 7 |
limbic lobe | 2.46e-07 | 7 |
ectoderm-derived structure | 2.60e-07 | 95 |
ectoderm | 2.60e-07 | 95 |
presumptive ectoderm | 2.60e-07 | 95 |