FFCP PHASE1:Mm9::chr1:136456734..136456757,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=75605 | |EntrezGene=75605 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2153 | |||
|TSSclassifier=NA | |||
|UniProt=Q80Y84,E9Q8E9,Q3TQL9 | |UniProt=Q80Y84,E9Q8E9,Q3TQL9 | ||
|association_with_transcript=0bp_to_ENSMUST00000047714,ENSMUST00000163900,NM_152895,uc007csf.2,uc007csg.2,uc011wsg.1_5end | |association_with_transcript=0bp_to_ENSMUST00000047714,ENSMUST00000163900,NM_152895,uc007csf.2,uc007csg.2,uc011wsg.1_5end | ||
|cluster_id=chr1:136456734..136456757,+ | |||
|description=CAGE_peak_3_at_Kdm5b_5end | |description=CAGE_peak_3_at_Kdm5b_5end | ||
|id=chr1:136456734..136456757,+ | |id=chr1:136456734..136456757,+ | ||
|ontology_enrichment_celltype=CL:0000540!1.52e-10!33;CL:0000047!1.52e-10!33;CL:0000031!1.52e-10!33;CL:0000404!1.52e-10!33;CL:0000393!8.73e-09!39;CL:0000211!8.73e-09!39;CL:0000117!5.83e-08!23;CL:0000337!5.83e-08!23 | |ontology_enrichment_celltype=CL:0000540!1.52e-10!33;CL:0000047!1.52e-10!33;CL:0000031!1.52e-10!33;CL:0000404!1.52e-10!33;CL:0000393!8.73e-09!39;CL:0000211!8.73e-09!39;CL:0000117!5.83e-08!23;CL:0000337!5.83e-08!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.52e-10,33;CL:0000047,1.52e-10,33;CL:0000031,1.52e-10,33;CL:0000404,1.52e-10,33;CL:0000393,8.73e-09,39;CL:0000211,8.73e-09,39;CL:0000117,5.83e-08,23;CL:0000337,5.83e-08,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.27e-11!102;UBERON:0000924!2.27e-11!102;UBERON:0006601!2.27e-11!102;UBERON:0001017!2.58e-11!73;UBERON:0005743!2.58e-11!73;UBERON:0000073!1.42e-10!75;UBERON:0001016!1.42e-10!75;UBERON:0003056!2.99e-10!49;UBERON:0002346!4.75e-10!71;UBERON:0003075!4.75e-10!71;UBERON:0007284!4.75e-10!71;UBERON:0000033!4.84e-10!63;UBERON:0002780!1.20e-09!39;UBERON:0001890!1.20e-09!39;UBERON:0006240!1.20e-09!39;UBERON:0000955!2.37e-09!50;UBERON:0006238!2.37e-09!50;UBERON:0003080!2.39e-09!40;UBERON:0002616!6.79e-09!49;UBERON:0000153!7.06e-09!94;UBERON:0001049!1.09e-08!52;UBERON:0005068!1.09e-08!52;UBERON:0006241!1.09e-08!52;UBERON:0007135!1.09e-08!52;UBERON:0007811!2.23e-08!86;UBERON:0002020!2.61e-08!34;UBERON:0002791!5.26e-08!29;UBERON:0003528!5.26e-08!29;UBERON:0001893!5.26e-08!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.58e-11,73;UBERON:0004121,2.82e-11,95;UBERON:0000924,2.82e-11,95;UBERON:0006601,2.82e-11,95;UBERON:0010371,9.60e-11,73;UBERON:0001016,1.42e-10,75;UBERON:0003056,2.99e-10,49;UBERON:0002346,3.76e-10,64;UBERON:0003075,3.76e-10,64;UBERON:0007284,3.76e-10,64;UBERON:0002780,1.20e-09,39;UBERON:0001890,1.20e-09,39;UBERON:0006240,1.20e-09,39;UBERON:0000073,2.36e-09,54;UBERON:0003080,2.39e-09,40;UBERON:0000955,4.55e-09,47;UBERON:0006238,4.55e-09,47;UBERON:0001049,1.09e-08,52;UBERON:0005068,1.09e-08,52;UBERON:0006241,1.09e-08,52;UBERON:0007135,1.09e-08,52;UBERON:0002616,1.31e-08,46;UBERON:0002020,2.61e-08,34;UBERON:0003528,5.26e-08,29;UBERON:0002791,5.26e-08,29;UBERON:0001893,5.26e-08,29;UBERON:0010314,4.16e-07,92 | |||
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| |phase1_expression=17.2960754873177,12.9120900826564,16.3799726180233,14.215817931421,13.023288978605,9.40123922706583,5.13947809310157,11.879345756625,5.490760163915,6.08567768437183,10.7867319982068,8.21653237651965,13.6960583944965,13.5501623749446,3.99731714178795,4.45445588257617,2.79824751251259,10.2525203741427,10.2835825204304,10.1853516431527,13.351796553718,3.87234709683453,3.13439746966722,9.11956809922418,8.25873411841812,8.03924749761028,9.04600191934057,7.75696437669201,4.75058548640935,10.3332353201572,7.53883736228036,8.89042942843484,6.1506478758457,0,2.02196133825892,1.49611180822643,3.06254034393554,17.5783284909501,13.2827008569046,10.470474879476,14.1175557127443,13.6609096991689,20.3914348273085,8.81277725829041,12.3679856087808,9.36088436024576,6.25913075478431,3.05235218932625,5.27246838562732,6.02732687130279,4.89952475688769,5.75010257459886,9.2280433331755,15.9579671242496,9.07453257684653,9.77585856936598,10.601737277734,8.76642556871652,27.9196715986245,32.797440714866,29.1562445612842,5.76035704517525,6.22506357277798,4.94944844504769,3.9554654502679,4.9733608046227,5.09320187881288,5.76327457982332,30.381056406384,27.1361936046698,29.6558195505449,9.42648248532552,8.61387309711293,29.397791811589,34.0251422114739,26.6573448116906,13.2139057199266,11.8749224419225,13.2101618600369,31.3889364797861,29.0015830219639,24.4829284161677,9.21303896704557,11.2552522006336,12.3766580699216,15.3206864446307,14.2371680799103,25.3503246322409,9.23859558664845,6.04572480854284,15.3628179011889,6.0229671388697,8.83962733820076,4.31762553310254,4.54843492213368,2.24013443548668,6.60088774619234,5.79463096765396,3.11743205523443,4.94675404314476,16.4786801138716,11.5493829672886,25.4805239706646,42.6640021891999,2.38140145112336,4.81383744402687,3.0331466700887,6.62266502370548,11.3932668804756,12.4691396814453,9.88866362566974,6.39377504455497,11.992005857315,10.0984169170257,16.8151851204058,13.6976584549346,12.6069433544531,8.24216334443496,3.5384422077995,10.676612096529,9.05450225687614,9.69750506270444,9.31958806090611,19.3235326027621,24.0863712835473,5.8755122697976,2.39630249011841,0.599902730993408,1.77898317902291,9.58660092190865,18.3000241127451,33.0470946056833,10.9509321721134,19.1786592997748,10.389402227978,19.7934340942664,16.9053343991525,8.21086006026614,7.58168275301024,7.57590681191306,11.4505989807179,10.8053989083732,11.5239763075424,13.7141384230501,17.4853802818913,15.5017601544668,19.2088535347444,13.9699820199068,14.2274875335676,9.8335161687266,12.6684809398043,10.0830036916684,13.9023624612799,8.70630416305416,17.9030458674911,11.5439874754726,0,1.80143534980301,1.13665399758237,8.28503090142008,7.97388603935727,9.00310307305074,11.1270025725049,9.24791889212798,8.79322543458056,7.20855228726264,7.51165523918934,13.8950757416932,9.87359099480883,10.342550236983,10.7821516695988,8.91819923294527,5.04965265169416,9.12603647570528,18.5055154736432,26.034866931959,13.2167513193519,6.34681359992506,7.89166526980366,12.3085436086032,9.14958975386863,7.26060688644033,7.11609740303585,6.84812254005213,8.0669940462567,8.23494773620054,11.0587491872119,10.1467800740987,7.79856348476481,9.88701349519644,5.18731319699266,9.55878111620963,6.44870863240478,10.7393601853145,7.88954149711563,12.0154283428735,13.1887691273986,13.8167565183928,11.1928670709935,7.82333784291891,7.69293766422737,7.40382983530803,3.85388415213294,5.6727335943472,4.12773889737726,2.47348323623339,5.68008339887808,5.788251834058,4.83789118384698,5.75392274901621,5.5125977103512,4.66754402419738,17.2521847832825,8.55924179637558,6.86482880852033,5.55673531483646,6.81710171383266,7.71909634181387,12.9327233116623,14.7803301180978,12.711268162478,8.65699937453459,11.7345124144251,13.0654880804616,15.7108802984769,17.1717610114863,14.3447981136634,16.1669223443606,20.5696651568158,9.99566219766002,14.5055384767352,13.4523624480806,7.53956419696361,6.52686820582452,5.4094070032094,9.65778612066564,10.1146871692309,11.1351102262593,5.73772308818364,13.8859009962405,16.0909191902291,9.37052986311932,15.9413314322271,11.4705023017225,20.0518806674155,22.6461224631066,12.5491317519217,17.2430956167674,20.1596766752727,20.2432429345738,10.5035663054119,16.2039699337202,24.4330439030364,13.5275500837479,10.619611067197,8.98288353773431,9.06970670894253,6.60117779145643,12.4026795009925,9.83792473420568,14.4719844174204,10.1789444253702,9.62542921638748,7.58488219045958,5.27093042874994,11.3449097573006,12.9367050186439,10.443543453816,10.9954881215341,12.8602221018955,15.7832807941623,16.9450376721967,16.4549020602121,19.1812917942198,10.560226862867,15.2519091021951,5.07215315526412,14.0153315000258,18.4069446433332,10.9769523369244,12.4147237763262,10.833299383174,9.91034844541493,8.34413859047294,5.46786818553129,13.2087595496462,6.66700298530962,5.08594833912666,4.92099219795691,4.34678529092393,4.24946074984638,3.21888340344413,4.28419918793714,6.68269432610579,11.704431762502,11.1825706919767,8.7484326065659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| ||
|short_description=p3@Kdm5b | |short_description=p3@Kdm5b | ||
}} | }} |
Latest revision as of 10:15, 26 September 2015
Short description: | p3@Kdm5b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Kdm5b_5end |
Coexpression cluster: | MCL_coexpression_mm9:2153 |
Association with transcript: | 0bp_to_ENSMUST00000047714, ENSMUST00000163900, NM_152895, uc007csf.2, uc007csg.2, uc011wsg.1_5end |
EntrezGene: | Kdm5b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.52e-10 | 33 |
neuronal stem cell | 1.52e-10 | 33 |
neuroblast | 1.52e-10 | 33 |
electrically signaling cell | 1.52e-10 | 33 |
electrically responsive cell | 8.73e-09 | 39 |
electrically active cell | 8.73e-09 | 39 |
CNS neuron (sensu Vertebrata) | 5.83e-08 | 23 |
neuroblast (sensu Vertebrata) | 5.83e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.58e-11 | 73 |
ectoderm-derived structure | 2.82e-11 | 95 |
ectoderm | 2.82e-11 | 95 |
presumptive ectoderm | 2.82e-11 | 95 |
ecto-epithelium | 9.60e-11 | 73 |
nervous system | 1.42e-10 | 75 |
pre-chordal neural plate | 2.99e-10 | 49 |
neurectoderm | 3.76e-10 | 64 |
neural plate | 3.76e-10 | 64 |
presumptive neural plate | 3.76e-10 | 64 |
regional part of forebrain | 1.20e-09 | 39 |
forebrain | 1.20e-09 | 39 |
future forebrain | 1.20e-09 | 39 |
regional part of nervous system | 2.36e-09 | 54 |
anterior neural tube | 2.39e-09 | 40 |
brain | 4.55e-09 | 47 |
future brain | 4.55e-09 | 47 |
neural tube | 1.09e-08 | 52 |
neural rod | 1.09e-08 | 52 |
future spinal cord | 1.09e-08 | 52 |
neural keel | 1.09e-08 | 52 |
regional part of brain | 1.31e-08 | 46 |
gray matter | 2.61e-08 | 34 |
brain grey matter | 5.26e-08 | 29 |
regional part of telencephalon | 5.26e-08 | 29 |
telencephalon | 5.26e-08 | 29 |
structure with developmental contribution from neural crest | 4.16e-07 | 92 |