FFCP PHASE1:Mm9::chr6:48601771..48601774,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=122 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:48601771..48601774,+ | |||
|description=CAGE_peak_at_chr6:48601771..48601774,+ | |description=CAGE_peak_at_chr6:48601771..48601774,+ | ||
|id=chr6:48601771..48601774,+ | |id=chr6:48601771..48601774,+ | ||
|ontology_enrichment_celltype=CL:0000791!8.86e-09!9;CL:0000789!8.86e-09!9;CL:0002420!8.86e-09!9;CL:0002419!8.86e-09!9;CL:0000790!8.86e-09!9;CL:0000624!7.01e-08!8;CL:0000838!1.81e-07!12 | |ontology_enrichment_celltype=CL:0000791!8.86e-09!9;CL:0000789!8.86e-09!9;CL:0002420!8.86e-09!9;CL:0002419!8.86e-09!9;CL:0000790!8.86e-09!9;CL:0000624!7.01e-08!8;CL:0000838!1.81e-07!12 | ||
|ontology_enrichment_celltype_v019_2=CL:0002031,2.94e-14,25;CL:0000791,2.24e-13,9;CL:0000789,2.24e-13,9;CL:0002420,2.24e-13,9;CL:0002419,2.24e-13,9;CL:0000790,2.24e-13,9;CL:0000553,9.65e-13,6;CL:0000556,9.65e-13,6;CL:0000084,6.47e-11,11;CL:0000827,6.47e-11,11;CL:0000988,7.22e-11,32;CL:0002032,7.22e-11,32;CL:0000037,7.22e-11,32;CL:0000837,7.22e-11,32;CL:0000624,3.37e-10,8;CL:0000838,5.44e-10,12;CL:0000542,3.30e-09,13;CL:0000051,3.30e-09,13;CL:0000050,1.50e-08,9;CL:0002320,3.56e-07,46;CL:0000134,3.56e-07,46;CL:0000738,5.43e-07,17;CL:0002087,5.43e-07,17 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!3.16e-12!29;UBERON:0002193!1.01e-11!48;UBERON:0000065!1.87e-11!41;UBERON:0001004!5.86e-11!42;UBERON:0001041!1.34e-10!92;UBERON:0002390!3.77e-10!45;UBERON:0003061!3.77e-10!45;UBERON:0002405!7.72e-10!70;UBERON:0001007!2.47e-09!128;UBERON:0001555!2.47e-09!128;UBERON:0007026!2.47e-09!128;UBERON:0000077!2.59e-09!97;UBERON:0002370!4.05e-09!23;UBERON:0000974!4.05e-09!23;UBERON:0004807!4.05e-09!23;UBERON:0005058!4.05e-09!23;UBERON:0003351!4.05e-09!23;UBERON:0009113!4.05e-09!23;UBERON:0003295!4.05e-09!23;UBERON:0009722!4.05e-09!23;UBERON:0005562!4.05e-09!23;UBERON:0007690!4.05e-09!23;UBERON:0004119!6.23e-09!130;UBERON:0000925!6.23e-09!130;UBERON:0006595!6.23e-09!130;UBERON:0005057!6.37e-09!51;UBERON:0004921!1.37e-08!126;UBERON:0004185!1.37e-08!126;UBERON:0006562!1.67e-08!24;UBERON:0003408!1.67e-08!24;UBERON:0001557!1.67e-08!24;UBERON:0001042!1.67e-08!24;UBERON:0008814!1.67e-08!24;UBERON:0009145!1.67e-08!24;UBERON:0005911!1.49e-07!69;UBERON:0003104!3.10e-07!131;UBERON:0009142!3.10e-07!131;UBERON:0000926!5.92e-07!193;UBERON:0004120!5.92e-07!193;UBERON:0006603!5.92e-07!193;UBERON:0000072!5.95e-07!27;UBERON:0001048!6.22e-07!147;UBERON:0003081!9.41e-07!88 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.80e-13,45;UBERON:0003061,2.80e-13,45;UBERON:0002193,2.47e-12,48;UBERON:0002405,2.47e-12,48;UBERON:0004177,1.70e-09,29;UBERON:0005057,1.70e-09,29;UBERON:0000077,1.08e-07,35;UBERON:0002384,3.56e-07,46;UBERON:0002370,4.34e-07,23;UBERON:0000974,4.34e-07,23;UBERON:0004807,4.34e-07,23;UBERON:0005058,4.34e-07,23;UBERON:0003351,4.34e-07,23;UBERON:0009113,4.34e-07,23;UBERON:0003295,4.34e-07,23;UBERON:0009722,4.34e-07,23;UBERON:0005562,4.34e-07,23;UBERON:0007690,4.34e-07,23;UBERON:0006562,9.00e-07,24;UBERON:0003408,9.00e-07,24;UBERON:0001557,9.00e-07,24;UBERON:0001042,9.00e-07,24;UBERON:0008814,9.00e-07,24;UBERON:0009145,9.00e-07,24 | |||
|phase1_expression=0,0,0,0,0,0,0,3.22808308603941,0.703943610758334,0.234064526321993,0.34243593645101,0.239316476986009,2.05440875917447,4.10875891369288,0.666219523631325,1.01237633694913,0,1.57731082679119,2.74228867211478,1.27316895539409,0.17008658030214,0,0,0.319984845586813,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.838913030288682,2.17608642603403,1.00828139742739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0.860423876981386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0.517875767294343,0,0.173485326766136,0,0,0,0.352766121407114,0.125666591329675,0,0,0,0,0.441683036920787,0,0,0,0,0.255457055208591,0.11981512450592,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0,0.420883711772948,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0.411564272815887,0,0,0,0,0,0.234526059981096,0,0,0.196764231747404,0.154267112887378,0.232533944750408,0,0,0,0.656669856316381,0.243206428637567,0.146199987425332,0,0.805238512562231,0,0,0,0,0,0.232236671860439,0.128867461322093,0,0,0,0,0,0.251335208800269,0.198956472041151,0,0.898819408654221,0.432276099749388,0.398282546508734,0,0,0,0.407302655690628,0,0,0.189709611372772,0.147610147979602,0,0.246794327843601,0.592905254174298,0,0,0,0.405720242777006,0,0,0,0.162135226775035,0.274561413188081,1.43768206527355,0,0,0,0,0,0.184753190166605,0,0,0.678980343100753,0,0.167506257441816,0.238043640886014,0.780534591431195,0.315270288212382,0.221464689648775,0.318909537314974,1.47476983244164,1.38147985492716,0.289298117163023,0,0,0,0.275936746304732,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188605079755898,0,0,0.258428293168221,0,0,0.316036757935816,0,1.03135543248187,0,0,0,0,0,0.178368817602071,0,0,0,0,0,0,0,0,0,0.164140899745061,0.874442509889552,0,1.36696704638282,0,0.370389054739423,0.565105371014073,0.956859594047176,1.14389086603261,0.509935289981566,0.279902904647316,0.138199973804424,0,0,0,0,0,0.436725127492355,0.134864346384821,0.0826534557253359,0,0.129614973291793,0,0,0,0,0,0,0.337912250981556,0,0,0.104859344425711,0,0,2.21207784439725,0,0,0.129920822977795,0,0.198681354781265,0.961563596159751,0.738447635872886,0.706765149637033,0.762068066549998,1.10908803650525,2.24153125701431,1.15454209968395,0.935015217452552,0,0,0,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0,0,0,0,0,0,0,0,0.187283014939765,0.0640251524048693,0,0,0.231768651889711,0,0,0,0.342869252385415,0.177475806159338,0,0,0.188218760830661,0.0846146078916765,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,3.22808308603941,0.703943610758334,0.234064526321993,0.34243593645101,0.239316476986009,2.05440875917447,4.10875891369288,0.666219523631325,1.01237633694913,0,1.57731082679119,2.74228867211478,1.27316895539409,0.17008658030214,0,0,0.319984845586813,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.838913030288682,2.17608642603403,1.00828139742739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0.860423876981386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0.517875767294343,0,0.173485326766136,0,0,0,0.352766121407114,0.125666591329675,0,0,0,0,0.441683036920787,0,0,0,0,0.255457055208591,0.11981512450592,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0,0.420883711772948,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0.411564272815887,0,0,0,0,0,0.234526059981096,0,0,0.196764231747404,0.154267112887378,0.232533944750408,0,0,0,0.656669856316381,0.243206428637567,0.146199987425332,0,0.805238512562231,0,0,0,0,0,0.232236671860439,0.128867461322093,0,0,0,0,0,0.251335208800269,0.198956472041151,0,0.898819408654221,0.432276099749388,0.398282546508734,0,0,0,0.407302655690628,0,0,0.189709611372772,0.147610147979602,0,0.246794327843601,0.592905254174298,0,0,0,0.405720242777006,0,0,0,0.162135226775035,0.274561413188081,1.43768206527355,0,0,0,0,0,0.184753190166605,0,0,0.678980343100753,0,0.167506257441816,0.238043640886014,0.780534591431195,0.315270288212382,0.221464689648775,0.318909537314974,1.47476983244164,1.38147985492716,0.289298117163023,0,0,0,0.275936746304732,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188605079755898,0,0,0.258428293168221,0,0,0.316036757935816,0,1.03135543248187,0,0,0,0,0,0.178368817602071,0,0,0,0,0,0,0,0,0,0.164140899745061,0.874442509889552,0,1.36696704638282,0,0.370389054739423,0.565105371014073,0.956859594047176,1.14389086603261,0.509935289981566,0.279902904647316,0.138199973804424,0,0,0,0,0,0.436725127492355,0.134864346384821,0.0826534557253359,0,0.129614973291793,0,0,0,0,0,0,0.337912250981556,0,0,0.104859344425711,0,0,2.21207784439725,0,0,0.129920822977795,0,0.198681354781265,0.961563596159751,0.738447635872886,0.706765149637033,0.762068066549998,1.10908803650525,2.24153125701431,1.15454209968395,0.935015217452552,0,0,0,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0,0,0,0,0,0,0,0,0.187283014939765,0.0640251524048693,0,0,0.231768651889711,0,0,0,0.342869252385415,0.177475806159338,0,0,0.188218760830661,0.0846146078916765,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr6:48601771..48601774,+ | |short_description=p@chr6:48601771..48601774,+ | ||
}} | }} |
Latest revision as of 20:06, 5 August 2015
Short description: | p@chr6:48601771..48601774, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:48601771..48601774, + |
Coexpression cluster: | MCL_coexpression_mm9:122 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 2.94e-14 | 25 |
mature alpha-beta T cell | 2.24e-13 | 9 |
alpha-beta T cell | 2.24e-13 | 9 |
immature T cell | 2.24e-13 | 9 |
mature T cell | 2.24e-13 | 9 |
immature alpha-beta T cell | 2.24e-13 | 9 |
megakaryocyte progenitor cell | 9.65e-13 | 6 |
megakaryocyte | 9.65e-13 | 6 |
T cell | 6.47e-11 | 11 |
pro-T cell | 6.47e-11 | 11 |
hematopoietic cell | 7.22e-11 | 32 |
hematopoietic oligopotent progenitor cell | 7.22e-11 | 32 |
hematopoietic stem cell | 7.22e-11 | 32 |
hematopoietic multipotent progenitor cell | 7.22e-11 | 32 |
CD4-positive, alpha-beta T cell | 3.37e-10 | 8 |
lymphoid lineage restricted progenitor cell | 5.44e-10 | 12 |
lymphocyte | 3.30e-09 | 13 |
common lymphoid progenitor | 3.30e-09 | 13 |
megakaryocyte-erythroid progenitor cell | 1.50e-08 | 9 |
connective tissue cell | 3.56e-07 | 46 |
mesenchymal cell | 3.56e-07 | 46 |
leukocyte | 5.43e-07 | 17 |
nongranular leukocyte | 5.43e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.80e-13 | 45 |
blood island | 2.80e-13 | 45 |
hemolymphoid system | 2.47e-12 | 48 |
immune system | 2.47e-12 | 48 |
hemopoietic organ | 1.70e-09 | 29 |
immune organ | 1.70e-09 | 29 |
mixed endoderm/mesoderm-derived structure | 1.08e-07 | 35 |
connective tissue | 3.56e-07 | 46 |
thymus | 4.34e-07 | 23 |
neck | 4.34e-07 | 23 |
respiratory system epithelium | 4.34e-07 | 23 |
hemolymphoid system gland | 4.34e-07 | 23 |
pharyngeal epithelium | 4.34e-07 | 23 |
thymic region | 4.34e-07 | 23 |
pharyngeal gland | 4.34e-07 | 23 |
entire pharyngeal arch endoderm | 4.34e-07 | 23 |
thymus primordium | 4.34e-07 | 23 |
early pharyngeal endoderm | 4.34e-07 | 23 |
pharynx | 9.00e-07 | 24 |
gland of gut | 9.00e-07 | 24 |
upper respiratory tract | 9.00e-07 | 24 |
chordate pharynx | 9.00e-07 | 24 |
pharyngeal arch system | 9.00e-07 | 24 |
pharyngeal region of foregut | 9.00e-07 | 24 |