Coexpression cluster:C3633: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
|full_id=C3633_testicular_large_melanoma_papillary_osteosarcoma_Trabecular_gastric | |full_id=C3633_testicular_large_melanoma_papillary_osteosarcoma_Trabecular_gastric | ||
|id=C3633 | |id=C3633 | ||
|ontology_enrichment_celltype=CL:0000066! | |ontology_enrichment_celltype=CL:0000066!3.08e-35!253;CL:0002321!3.58e-26!250;CL:0000548!2.58e-15!679;CL:0000255!2.58e-15!679;CL:0000222!1.85e-11!121;CL:0000076!2.92e-10!63;CL:0000223!2.91e-09!58;CL:0000071!1.54e-08!18;CL:0002546!1.54e-08!18;CL:0002139!1.15e-07!24;CL:0002078!1.21e-07!45;CL:0000003!3.01e-07!722;CL:0000115!7.04e-07!36;CL:0002076!9.83e-07!42 | ||
|ontology_enrichment_disease=DOID:305! | |ontology_enrichment_disease=DOID:305!3.32e-11!106;DOID:0050687!6.60e-10!143;DOID:14566!3.58e-09!239;DOID:162!7.25e-09!235 | ||
|ontology_enrichment_uberon=UBERON:0003914! | |ontology_enrichment_uberon=UBERON:0003914!2.74e-16!117;UBERON:0000490!7.18e-16!148;UBERON:0000475!1.48e-15!264;UBERON:0000119!5.07e-13!309;UBERON:0000483!2.31e-12!306;UBERON:0002100!7.72e-12!199;UBERON:0002049!1.85e-11!78;UBERON:0007798!1.85e-11!78;UBERON:0000055!8.43e-11!68;UBERON:0000477!2.89e-10!373;UBERON:0007500!5.16e-10!59;UBERON:0001981!5.16e-10!59;UBERON:0004537!5.16e-10!59;UBERON:0006965!5.16e-10!59;UBERON:0005177!2.02e-09!101;UBERON:0003104!2.94e-09!160;UBERON:0009142!2.94e-09!160;UBERON:0004119!3.14e-09!160;UBERON:0000925!3.14e-09!160;UBERON:0006595!3.14e-09!160;UBERON:0005256!4.12e-09!122;UBERON:0004872!8.76e-09!83;UBERON:0001637!1.51e-08!42;UBERON:0003509!1.51e-08!42;UBERON:0004572!1.51e-08!42;UBERON:0004638!1.54e-08!18;UBERON:0001986!1.54e-08!18;UBERON:0004852!1.54e-08!18;UBERON:0000487!2.11e-08!22;UBERON:0001048!2.73e-08!160;UBERON:0004111!3.78e-08!240;UBERON:0000481!4.01e-08!342;UBERON:0000466!4.31e-08!117;UBERON:0006914!1.07e-07!25;UBERON:0000486!1.80e-07!83;UBERON:0005911!1.97e-07!82;UBERON:0001007!3.82e-07!145;UBERON:0001555!3.82e-07!145;UBERON:0007026!3.82e-07!145;UBERON:0004535!6.38e-07!109 | ||
|tf_chipseq_enrich=BHLHE40#8553;3:44.8718135469774:1.10603738662898e-05:0.000284305780512292!CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0189819948668446!CHD2#1106;3:10.3440228341169:0.000903370110274688:0.00659908169175199!CTCF#10664;3:5.36025637307503:0.006492509252767:0.027913353114183!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0324885785756952!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0321682279862294!EGR1#1958;3:4.98817909481014:0.00805648813738344:0.032020838169509!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0461694624106862!EP300#2033;3:6.7739417262232:0.00321688050010379:0.0167314632744193!FOSL2#2355;3:16.9302006045617:0.000206016205317162:0.00242736083789701!FOXA1#3169;3:11.0814197493855:0.00073475527569867:0.00580725792634277!GABPB1#2553;3:7.06768383618217:0.00283221282541742:0.0153938836988691!HDAC2#3066;3:13.4156202366263:0.000414076139985721:0.00390833239800892!HNF4A#3172;3:23.1322903629537:8.07584663437677e-05:0.00122716913523596!HNF4G#3174;3:28.7534225264468:4.20470658818262e-05:0.000756217240163948!RXRA#6256;3:20.0746171391333:0.000123573034843222:0.0016514196015344!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0276313042212132!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0246198072153253!TCF7L2#6934;3:10.7701765631373:0.000800318129839838:0.00612878905721828!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0328924804851365!ZBTB7A#51341;3:7.3519093078759:0.00251625586028227:0.013998574857083 | |tf_chipseq_enrich=BHLHE40#8553;3:44.8718135469774:1.10603738662898e-05:0.000284305780512292!CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0189819948668446!CHD2#1106;3:10.3440228341169:0.000903370110274688:0.00659908169175199!CTCF#10664;3:5.36025637307503:0.006492509252767:0.027913353114183!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0324885785756952!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0321682279862294!EGR1#1958;3:4.98817909481014:0.00805648813738344:0.032020838169509!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0461694624106862!EP300#2033;3:6.7739417262232:0.00321688050010379:0.0167314632744193!FOSL2#2355;3:16.9302006045617:0.000206016205317162:0.00242736083789701!FOXA1#3169;3:11.0814197493855:0.00073475527569867:0.00580725792634277!GABPB1#2553;3:7.06768383618217:0.00283221282541742:0.0153938836988691!HDAC2#3066;3:13.4156202366263:0.000414076139985721:0.00390833239800892!HNF4A#3172;3:23.1322903629537:8.07584663437677e-05:0.00122716913523596!HNF4G#3174;3:28.7534225264468:4.20470658818262e-05:0.000756217240163948!RXRA#6256;3:20.0746171391333:0.000123573034843222:0.0016514196015344!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0276313042212132!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0246198072153253!TCF7L2#6934;3:10.7701765631373:0.000800318129839838:0.00612878905721828!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0328924804851365!ZBTB7A#51341;3:7.3519093078759:0.00251625586028227:0.013998574857083 | ||
|tfbs_overrepresentation=0.147255,0.00175569,0.00033887,0.0477154,0.199763,0.0050633,0.0430074,0.101122,0.03272,0.0257057,0.139423,0.0275521,0.188771,0.125978,0.148679,0.0619003,5.95171e-07,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.00198832,0.00181435,0.00424558,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.113083,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.00190755,8.50717e-05,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.00381532,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,4.12188e-10,0.062747,0.0857568,0.0495878,0.00470085,1.83722e-05,0.0853887,0.115028,0.000303831,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.00117529,0.0339971,0.149552,0.0176855,0.005305,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.00424238,0.0147934,0.0843604,0.00954291,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,2.9462e-05,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,5.12341e-06,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.0255071,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,3.50274e-06,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.000260351,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,3.88622e-05,0.136451,0.037005,0.0413967,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.000610418,0.169057,0.164202,0.100942,0.00202722,0.10299,0.14193,0.37245,0.0128655,1.20153e-06,0.0738599,1.25606e-05,0.000497929,0.085973,0.060453,0.059896,0.00177343,0.0133328,0.0418404,0.0765029,0.000158474,0.0931946,0.0472272,0.00377835,0.014161,0.214803,0.0177645,0.348993,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.0802194,0.117027,0.159052,0.0183114,0.00124042,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.00029312,0.0619218,0.0163125,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.00292601,2.34834e-05,0.063292,1.43549e-05,0.446759,0.0865903,0.0380459,0.130174,0.584917,0.00909613,0.000191546,0.268011,0.20128,8.37562e-05,0.0263372,0.335423,0.629514,0.261553,0.446302,0.0806291,0.309233,0.49143,0.330703,0.395854,0.329568,0.53472,0.615744,0.271958,0.292154,0.405773,0.39729,0.217139,0.0139202,0.187251,0.00120175,0.181715,0.000269589,0.109988,0.0620388,0.218329,0.107929,0.376924,0.129235,0.00436109,0.00734087,0.520763,0.370782,0.101703,0.484505,0.253571,0.276829,0.301787,0.00462582,0.316882,0.000139476,0.0340949,0.0026262,0.283727,0.314747,0.000273712,0.291709,0.448095,0.00192508,0.102333,0.292835,0.00439271,0.439556,0.0120909,0.000273537,0.241757,0.18237,7.73889e-09,5.29442e-10,0.000566966,0.275351,0.0304678,0.185661,0.346319,0.179399,0.270984,0.0179843,0.0340542,0.000105796,0.00691094,0.248634,0.281576,0.00419907,0.163244,0.0670502,0.0730934,0.184794,0.000359684,2.01623e-05,0.0121151,9.99552e-08,0.0267008,0.188159,0.551561,0.448039,0.00208206,0.312808,0.000236487,0.0451077,0.0747529,0.00241532,1.67378e-06,3.83513e-08,5.75666e-08,0.0054714,0.34331,0.00441816,0.289204,0.0077225,0.00120886,0.278044,2.89239e-12,0.428671,0.228096,0.336314,0.19763,0.15631,0.000235935,0.00242214,0.48267,0.0181002,0.0374607,0.000203002,0.0637439,0.144809,0.145539,0.08628,0.376191,0.0032214,0.459928,0.252232,0.152681,0.0465712,0.137098,0.00360191,0.134788,0.0985856,0.0460163,0.048108,0.00488039,0.00911104,0.306556,0.305777,0.601433,0.0340602,0.169823,0.284629,0.0379506,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,2.84237e-07,0.206222,0.171685,0.0905337,0.000324942,0.269226,0.339277,2.13553e-05,0.281425,0.141758,0.455379,0.520495,0.159617,0.238587,0.0119179,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.0178839,0.000983703,0.182325,0.34988,0.475069,0.404569,0.273024,0.0793778,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.00307017,0.00034627,0.191777,0.111931,0.28934,0.0435386,0.0515253,0.126478,0.134852,0.10689,0.273326,0.0627924,0.0129363,0.0179103,0.0517437,0.0434097,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.0684384,0.0499762,0.0828956,0.0666953,0.182185,0.111277,9.13558e-09,0.062811,0.19559,0.132201,0.188694,0.0481795,0.0214786,1.77914e-05,0.127758,0.0164446,0.0012141,0.015204,0.000120084,0.000155001,0.0112557,0.222432,0.107043,0.0043762,0.00481323,0.173708,0.141119,0.0241568,0.000456679,0.131551,0.0445237,0.052362,0.00179985,0.000676703,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.517717,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.000803238,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.0154037,0.201033,0.0488949,0.174921,0.0117175,0.0330727,0.348757,0.02609,0.0394698,0.0596469,0.103658,0.122476,0.108872,0.11002,0.26144,0.0286025,0.000180779,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.090504,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.0178107,0.0637246,0.011488,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,2.96714e-05,0.120459,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,2.19918e-09,0.288159,0.21727,0.00514993,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.000170831,0.0608699,0.175319,0.300597,6.38787e-05,0.223874,0.000444106,0.0355833,0.125606,0.175094,1.30989e-10,6.33791e-09,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.00921075,0.00102818,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.0266106,0.057168,0.00259914,0.0759837,0.0457643,0.152372,0.0203723,0.00207136,0.101607,0.00771936,0.172982,0.0661495,0.151597,0.0626744,0.00136247,0.148574,9.07794e-06,0.155821,0.0718905,0.0919008,0.0602373,0.0109522,2.59866e-05,0.0973823,2.93332e-05,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.0622625,0.113145,0.112651,0.186638,0.174776,0.0948451,0.00382477,0.00316392,0.140533,0.000178916,0.0364628,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.0190329,0.0813902,0.184948,0.156261,0.0546539,0.0062542,0.0590944,0.247324,0.178389,0.218229,0.231073,0.0972686,0.0170505,0.0360851,0.0168763,0.131093,0.0434602,0.133616,0.418146,0.0115948,0.00328135,0.407369,0.231447,0.00858901,0.43956,0.37006,0.10748,0.00327292,0.197484,0.396996,0.36145,0.000207636,0.0841307,0.0119618,0.276075,0.432035,8.1243e-06,0.0140037,0.48809,8.61357e-05,0.117158,0.522904,1.38794e-13,9.77634e-15,0.227104,0.0380245,0.00310917,0.0135352,0.284625,0.00583062,0.0091887,1.43632e-07,0.28907,0.164197,0.00379441,0.287881,0.000261949,0.000566617,0.336276,0.468444,0.258219,0.0031948,0.243383,5.59455e-07,0.390974,1.84416e-08,0.00650842,0.161598,2.65641e-07,0.277094,0.000714735,1.71167e-08,0.37357,6.9989e-07,0.477353,0.00492096,0.000558506,0.000153842,0.20342,0.200493,0.20558,0.300504,0.00348292,0.0189087,0.349197,0.383291,0.156104,0.000526011,0.0168417,0.0961477,0.314438,9.36133e-05,0.163828,0.230581,0.120226,0.28424,0.20075,0.0556238,0.181415,0.282286,0.00465874,0.616388,0.408413,0.516511,0.322213,0.0931134,0.33942,0.0700181,0.387276,0.0391112,0.00640674,0.00120002,0.222037,0.416621,0.416292,0.462712,1.84971e-09,0.215157,0.204817,0.0233392,0.138871,0.00105709,0.166905,0.19783,0.0833851,0.056391,0.48065,0.175199,0.332919,0.0805711,0.00101302,0.0164118,0.00124345,0.00780726,0.39088,0.363192,0.236011,0.203486,0.273398,0.0816179,0.0223007,0.351067,0.275347,0.0830022,0.305885,0.241132,0.371414,0.00623664,0.303709,0.495883,0.0135408,0.035296,0.250964,0.383276,0.457886,0.504711,0.220231,0.159791,0.196976,0.191517,0.0254647,5.68721e-06,0.307334,0.459728,0.283463,0.563586,0.472935,0.0932845,0.273281,0.368095,0.275089,0.0133102,0.138622,0.359231,0.339729,0.197805,0.0690807,0.0136044,0.332774,0.52832,0.299887,0.0193657,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.000822975,0.219428,0.208013,0.0900729,0.0953646,0.0146333,0.252184,0.378361,0.000249719,0.20753,0.447185,0.179412,0.00141426,0.220904,0.0269454,5.18926e-06,0.310674,0.00206345,0.0015337,0.00126297,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.00455899,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.00178902,0.00394192,0.113092,0.145701,0.229428,0.162145,0.00241368,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,1.93025e-05,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.000352159,0.00361981,0.30793,0.0173907,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.00123184,0.0723291,0.00356871,0.261744,0.203781,0.21382,0.207559,0.000532415,0.193031,0.249101,0.115972,0.224568,1.18588e-05,0.173026,0.200432,0.0102599,0.197112,0.240478,0.156465,0.13108,0.256963,0.00221189,0.000975743,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.00161996,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.0577193,0.261724,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.00210274,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.000236163,0.04411,5.26612e-05,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.000980315,0.141729,0.0037817,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.000785583,0.00172878,0.19924,0.28689,0.236464,0.325148,0.115817,0.0257187,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.0272695,0.00452173,0.327622,0.225752,0.207791,0.00475042,0.0859274,0.316866,0.171683,3.24987e-05,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.205954,0.361435 | |tfbs_overrepresentation=0.147255,0.00175569,0.00033887,0.0477154,0.199763,0.0050633,0.0430074,0.101122,0.03272,0.0257057,0.139423,0.0275521,0.188771,0.125978,0.148679,0.0619003,5.95171e-07,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.00198832,0.00181435,0.00424558,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.113083,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.00190755,8.50717e-05,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.00381532,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,4.12188e-10,0.062747,0.0857568,0.0495878,0.00470085,1.83722e-05,0.0853887,0.115028,0.000303831,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.00117529,0.0339971,0.149552,0.0176855,0.005305,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.00424238,0.0147934,0.0843604,0.00954291,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,2.9462e-05,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,5.12341e-06,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.0255071,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,3.50274e-06,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.000260351,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,3.88622e-05,0.136451,0.037005,0.0413967,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.000610418,0.169057,0.164202,0.100942,0.00202722,0.10299,0.14193,0.37245,0.0128655,1.20153e-06,0.0738599,1.25606e-05,0.000497929,0.085973,0.060453,0.059896,0.00177343,0.0133328,0.0418404,0.0765029,0.000158474,0.0931946,0.0472272,0.00377835,0.014161,0.214803,0.0177645,0.348993,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.0802194,0.117027,0.159052,0.0183114,0.00124042,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.00029312,0.0619218,0.0163125,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.00292601,2.34834e-05,0.063292,1.43549e-05,0.446759,0.0865903,0.0380459,0.130174,0.584917,0.00909613,0.000191546,0.268011,0.20128,8.37562e-05,0.0263372,0.335423,0.629514,0.261553,0.446302,0.0806291,0.309233,0.49143,0.330703,0.395854,0.329568,0.53472,0.615744,0.271958,0.292154,0.405773,0.39729,0.217139,0.0139202,0.187251,0.00120175,0.181715,0.000269589,0.109988,0.0620388,0.218329,0.107929,0.376924,0.129235,0.00436109,0.00734087,0.520763,0.370782,0.101703,0.484505,0.253571,0.276829,0.301787,0.00462582,0.316882,0.000139476,0.0340949,0.0026262,0.283727,0.314747,0.000273712,0.291709,0.448095,0.00192508,0.102333,0.292835,0.00439271,0.439556,0.0120909,0.000273537,0.241757,0.18237,7.73889e-09,5.29442e-10,0.000566966,0.275351,0.0304678,0.185661,0.346319,0.179399,0.270984,0.0179843,0.0340542,0.000105796,0.00691094,0.248634,0.281576,0.00419907,0.163244,0.0670502,0.0730934,0.184794,0.000359684,2.01623e-05,0.0121151,9.99552e-08,0.0267008,0.188159,0.551561,0.448039,0.00208206,0.312808,0.000236487,0.0451077,0.0747529,0.00241532,1.67378e-06,3.83513e-08,5.75666e-08,0.0054714,0.34331,0.00441816,0.289204,0.0077225,0.00120886,0.278044,2.89239e-12,0.428671,0.228096,0.336314,0.19763,0.15631,0.000235935,0.00242214,0.48267,0.0181002,0.0374607,0.000203002,0.0637439,0.144809,0.145539,0.08628,0.376191,0.0032214,0.459928,0.252232,0.152681,0.0465712,0.137098,0.00360191,0.134788,0.0985856,0.0460163,0.048108,0.00488039,0.00911104,0.306556,0.305777,0.601433,0.0340602,0.169823,0.284629,0.0379506,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,2.84237e-07,0.206222,0.171685,0.0905337,0.000324942,0.269226,0.339277,2.13553e-05,0.281425,0.141758,0.455379,0.520495,0.159617,0.238587,0.0119179,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.0178839,0.000983703,0.182325,0.34988,0.475069,0.404569,0.273024,0.0793778,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.00307017,0.00034627,0.191777,0.111931,0.28934,0.0435386,0.0515253,0.126478,0.134852,0.10689,0.273326,0.0627924,0.0129363,0.0179103,0.0517437,0.0434097,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.0684384,0.0499762,0.0828956,0.0666953,0.182185,0.111277,9.13558e-09,0.062811,0.19559,0.132201,0.188694,0.0481795,0.0214786,1.77914e-05,0.127758,0.0164446,0.0012141,0.015204,0.000120084,0.000155001,0.0112557,0.222432,0.107043,0.0043762,0.00481323,0.173708,0.141119,0.0241568,0.000456679,0.131551,0.0445237,0.052362,0.00179985,0.000676703,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.517717,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.000803238,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.0154037,0.201033,0.0488949,0.174921,0.0117175,0.0330727,0.348757,0.02609,0.0394698,0.0596469,0.103658,0.122476,0.108872,0.11002,0.26144,0.0286025,0.000180779,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.090504,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.0178107,0.0637246,0.011488,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,2.96714e-05,0.120459,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,2.19918e-09,0.288159,0.21727,0.00514993,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.000170831,0.0608699,0.175319,0.300597,6.38787e-05,0.223874,0.000444106,0.0355833,0.125606,0.175094,1.30989e-10,6.33791e-09,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.00921075,0.00102818,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.0266106,0.057168,0.00259914,0.0759837,0.0457643,0.152372,0.0203723,0.00207136,0.101607,0.00771936,0.172982,0.0661495,0.151597,0.0626744,0.00136247,0.148574,9.07794e-06,0.155821,0.0718905,0.0919008,0.0602373,0.0109522,2.59866e-05,0.0973823,2.93332e-05,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.0622625,0.113145,0.112651,0.186638,0.174776,0.0948451,0.00382477,0.00316392,0.140533,0.000178916,0.0364628,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.0190329,0.0813902,0.184948,0.156261,0.0546539,0.0062542,0.0590944,0.247324,0.178389,0.218229,0.231073,0.0972686,0.0170505,0.0360851,0.0168763,0.131093,0.0434602,0.133616,0.418146,0.0115948,0.00328135,0.407369,0.231447,0.00858901,0.43956,0.37006,0.10748,0.00327292,0.197484,0.396996,0.36145,0.000207636,0.0841307,0.0119618,0.276075,0.432035,8.1243e-06,0.0140037,0.48809,8.61357e-05,0.117158,0.522904,1.38794e-13,9.77634e-15,0.227104,0.0380245,0.00310917,0.0135352,0.284625,0.00583062,0.0091887,1.43632e-07,0.28907,0.164197,0.00379441,0.287881,0.000261949,0.000566617,0.336276,0.468444,0.258219,0.0031948,0.243383,5.59455e-07,0.390974,1.84416e-08,0.00650842,0.161598,2.65641e-07,0.277094,0.000714735,1.71167e-08,0.37357,6.9989e-07,0.477353,0.00492096,0.000558506,0.000153842,0.20342,0.200493,0.20558,0.300504,0.00348292,0.0189087,0.349197,0.383291,0.156104,0.000526011,0.0168417,0.0961477,0.314438,9.36133e-05,0.163828,0.230581,0.120226,0.28424,0.20075,0.0556238,0.181415,0.282286,0.00465874,0.616388,0.408413,0.516511,0.322213,0.0931134,0.33942,0.0700181,0.387276,0.0391112,0.00640674,0.00120002,0.222037,0.416621,0.416292,0.462712,1.84971e-09,0.215157,0.204817,0.0233392,0.138871,0.00105709,0.166905,0.19783,0.0833851,0.056391,0.48065,0.175199,0.332919,0.0805711,0.00101302,0.0164118,0.00124345,0.00780726,0.39088,0.363192,0.236011,0.203486,0.273398,0.0816179,0.0223007,0.351067,0.275347,0.0830022,0.305885,0.241132,0.371414,0.00623664,0.303709,0.495883,0.0135408,0.035296,0.250964,0.383276,0.457886,0.504711,0.220231,0.159791,0.196976,0.191517,0.0254647,5.68721e-06,0.307334,0.459728,0.283463,0.563586,0.472935,0.0932845,0.273281,0.368095,0.275089,0.0133102,0.138622,0.359231,0.339729,0.197805,0.0690807,0.0136044,0.332774,0.52832,0.299887,0.0193657,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.000822975,0.219428,0.208013,0.0900729,0.0953646,0.0146333,0.252184,0.378361,0.000249719,0.20753,0.447185,0.179412,0.00141426,0.220904,0.0269454,5.18926e-06,0.310674,0.00206345,0.0015337,0.00126297,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.00455899,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.00178902,0.00394192,0.113092,0.145701,0.229428,0.162145,0.00241368,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,1.93025e-05,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.000352159,0.00361981,0.30793,0.0173907,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.00123184,0.0723291,0.00356871,0.261744,0.203781,0.21382,0.207559,0.000532415,0.193031,0.249101,0.115972,0.224568,1.18588e-05,0.173026,0.200432,0.0102599,0.197112,0.240478,0.156465,0.13108,0.256963,0.00221189,0.000975743,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.00161996,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.0577193,0.261724,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.00210274,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.000236163,0.04411,5.26612e-05,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.000980315,0.141729,0.0037817,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.000785583,0.00172878,0.19924,0.28689,0.236464,0.325148,0.115817,0.0257187,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.0272695,0.00452173,0.327622,0.225752,0.207791,0.00475042,0.0859274,0.316866,0.171683,3.24987e-05,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.205954,0.361435 | ||
}} | }} | ||
Revision as of 15:16, 19 October 2012
Full id: C3633_testicular_large_melanoma_papillary_osteosarcoma_Trabecular_gastric
Phase1 CAGE Peaks
| Hg19::chr17:41622834..41622883,- | p6@ETV4 |
| Hg19::chr17:41622901..41622913,- | p16@ETV4 |
| Hg19::chr17:41622925..41622976,- | p3@ETV4 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 3.08e-35 | 253 |
| embryonic cell | 3.58e-26 | 250 |
| animal cell | 2.58e-15 | 679 |
| eukaryotic cell | 2.58e-15 | 679 |
| mesodermal cell | 1.85e-11 | 121 |
| squamous epithelial cell | 2.92e-10 | 63 |
| endodermal cell | 2.91e-09 | 58 |
| blood vessel endothelial cell | 1.54e-08 | 18 |
| embryonic blood vessel endothelial progenitor cell | 1.54e-08 | 18 |
| endothelial cell of vascular tree | 1.15e-07 | 24 |
| meso-epithelial cell | 1.21e-07 | 45 |
| native cell | 3.01e-07 | 722 |
| endothelial cell | 7.04e-07 | 36 |
| endo-epithelial cell | 9.83e-07 | 42 |
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 3.32e-11 | 106 |
| cell type cancer | 6.60e-10 | 143 |
| disease of cellular proliferation | 3.58e-09 | 239 |
| cancer | 7.25e-09 | 235 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| BHLHE40#8553 | 3 | 44.8718135469774 | 1.10603738662898e-05 | 0.000284305780512292 |
| CCNT2#905 | 3 | 6.33620157696263 | 0.00393075003576489 | 0.0189819948668446 |
| CHD2#1106 | 3 | 10.3440228341169 | 0.000903370110274688 | 0.00659908169175199 |
| CTCF#10664 | 3 | 5.36025637307503 | 0.006492509252767 | 0.027913353114183 |
| E2F1#1869 | 3 | 4.90738921487932 | 0.00846098534723939 | 0.0324885785756952 |
| E2F6#1876 | 3 | 5.01715573169739 | 0.0079176980688633 | 0.0321682279862294 |
| EGR1#1958 | 3 | 4.98817909481014 | 0.00805648813738344 | 0.032020838169509 |
| ELF1#1997 | 3 | 4.25809795880754 | 0.0129517987505461 | 0.0461694624106862 |
| EP300#2033 | 3 | 6.7739417262232 | 0.00321688050010379 | 0.0167314632744193 |
| FOSL2#2355 | 3 | 16.9302006045617 | 0.000206016205317162 | 0.00242736083789701 |
| FOXA1#3169 | 3 | 11.0814197493855 | 0.00073475527569867 | 0.00580725792634277 |
| GABPB1#2553 | 3 | 7.06768383618217 | 0.00283221282541742 | 0.0153938836988691 |
| HDAC2#3066 | 3 | 13.4156202366263 | 0.000414076139985721 | 0.00390833239800892 |
| HNF4A#3172 | 3 | 23.1322903629537 | 8.07584663437677e-05 | 0.00122716913523596 |
| HNF4G#3174 | 3 | 28.7534225264468 | 4.20470658818262e-05 | 0.000756217240163948 |
| RXRA#6256 | 3 | 20.0746171391333 | 0.000123573034843222 | 0.0016514196015344 |
| SIN3A#25942 | 3 | 5.40888472681514 | 0.00631896197799152 | 0.0276313042212132 |
| SP1#6667 | 3 | 5.6983813781409 | 0.00540396270171217 | 0.0246198072153253 |
| TCF7L2#6934 | 3 | 10.7701765631373 | 0.000800318129839838 | 0.00612878905721828 |
| YY1#7528 | 3 | 4.91117074985386 | 0.00844145534180826 | 0.0328924804851365 |
| ZBTB7A#51341 | 3 | 7.3519093078759 | 0.00251625586028227 | 0.013998574857083 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
