Personal tools

MCL coexpression mm9:336: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0.120671864823979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.72513462546277,0.802135787735752,0.921841941105621,1.24940422890759,0.38018667012827,0.588277454879422,0,0,0,0,0,0,0.0400093965272457,0,0,0.126730149241647,0.276299728348189,0,0,0,0.33803591449491,0.465545164942724,0.0428469550828748,0.0549981337564001,0,0.0788137023527924,0.128576684443656,0.0250913949416665,0.0397493170902889,0,0,0,0,0,0.0190094117790312,0,0,0,0.0617533076901792,0.0257632116792298,0.108816382318513,0.0371154675793343,0,0,0,0.269611904680974,0.225301871178984,0,0.217425091336261,0.160776625956154,0,0,0,0,0,0,0,0,0,0,0,0.0234784353458152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0805105854221362,0,0,0,0.0531247310291112,0.0898705446131073,0.0719048733411253,0,0,0,0.0388988969149198,0,0,0,0,0,0,0,0,0.009106413081718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0425379529581421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112756652096095,0,0,0,0,0,0,0,0.468518230155375,0.348559379478858,0.871275111935284,0.509584974851781,0.433245267357182,0.097805083983237,0.0716601710131013,0.263028204403476,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0586723554240733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711694759496908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0528318955547673,0.0540298560583058,0,0.0712812415377886,0.0661577744756082,0.0274068227265203,0,0.041721220909304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0445418537893845,0,0.0857765460992942,0.054943952156948,0.0350357454944926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0212308449966822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141882030247812,0.0747003483965965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0269518943326477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0845301845292944,0,0,0
|coexpression_dpi_cluster_scores_median=0.120671864823979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.72513462546277,0.802135787735752,0.921841941105621,1.24940422890759,0.38018667012827,0.588277454879422,0,0,0,0,0,0,0.0400093965272457,0,0,0.126730149241647,0.276299728348189,0,0,0,0.33803591449491,0.465545164942724,0.0428469550828748,0.0549981337564001,0,0.0788137023527924,0.128576684443656,0.0250913949416665,0.0397493170902889,0,0,0,0,0,0.0190094117790312,0,0,0,0.0617533076901792,0.0257632116792298,0.108816382318513,0.0371154675793343,0,0,0,0.269611904680974,0.225301871178984,0,0.217425091336261,0.160776625956154,0,0,0,0,0,0,0,0,0,0,0,0.0234784353458152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0805105854221362,0,0,0,0.0531247310291112,0.0898705446131073,0.0719048733411253,0,0,0,0.0388988969149198,0,0,0,0,0,0,0,0,0.009106413081718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0425379529581421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112756652096095,0,0,0,0,0,0,0,0.468518230155375,0.348559379478858,0.871275111935284,0.509584974851781,0.433245267357182,0.097805083983237,0.0716601710131013,0.263028204403476,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0586723554240733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711694759496908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0528318955547673,0.0540298560583058,0,0.0712812415377886,0.0661577744756082,0.0274068227265203,0,0.041721220909304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0445418537893845,0,0.0857765460992942,0.054943952156948,0.0350357454944926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0212308449966822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141882030247812,0.0747003483965965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0269518943326477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0845301845292944,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0002453!1.82e-14!8;CL:0000128!2.14e-11!6;CL:0000126!2.14e-11!6;CL:0000127!2.14e-11!6;CL:0000333!3.59e-11!10;CL:0000095!3.59e-11!10;CL:0000243!3.59e-11!10;CL:0000123!3.59e-11!10;CL:0000125!3.59e-11!10;CL:0000030!3.59e-11!10;CL:0000339!3.59e-11!10;CL:0002319!6.89e-11!43;CL:0000221!1.63e-10!44;CL:0000133!1.63e-10!44;CL:0000055!7.05e-09!49;CL:0002321!5.69e-07!70
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!1.25e-10!22;UBERON:0007499!1.25e-10!22;UBERON:0006925!1.25e-10!22;UBERON:0009497!1.25e-10!22;UBERON:0000015!1.25e-10!22;UBERON:0002423!1.25e-10!22;UBERON:0006235!1.25e-10!22;UBERON:0008835!1.25e-10!22;UBERON:0003894!1.25e-10!22;UBERON:0004161!1.25e-10!22;UBERON:0008836!1.25e-10!22;UBERON:0009854!5.18e-10!23;UBERON:0009856!5.18e-10!23;UBERON:0004111!3.23e-09!122;UBERON:0002365!6.23e-09!25;UBERON:0002330!6.23e-09!25;UBERON:0000025!7.58e-09!114;UBERON:0001017!2.11e-08!73;UBERON:0002346!4.39e-08!64;UBERON:0003075!4.39e-08!64;UBERON:0007284!4.39e-08!64;UBERON:0001016!5.35e-08!75;UBERON:0004121!1.62e-07!95;UBERON:0000924!1.62e-07!95;UBERON:0006601!1.62e-07!95;UBERON:0001049!2.46e-07!52;UBERON:0005068!2.46e-07!52;UBERON:0006241!2.46e-07!52;UBERON:0007135!2.46e-07!52;UBERON:0001948!2.96e-07!5;UBERON:0002315!2.96e-07!5;UBERON:0010371!3.73e-07!73;UBERON:0000073!7.03e-07!54
}}
}}

Revision as of 19:56, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:70590577..70590581,-p@chr14:70590577..70590581
-
Mm9::chr1:72895653..72895660,+p9@Igfbp2
Mm9::chr1:72895682..72895718,+p7@Igfbp2
Mm9::chr1:72895725..72895757,+p6@Igfbp2
Mm9::chr1:72895732..72895747,-p@chr1:72895732..72895747
-
Mm9::chr1:72895774..72895788,+p@chr1:72895774..72895788
+
Mm9::chr1:72895789..72895808,+p@chr1:72895789..72895808
+
Mm9::chr1:72895796..72895810,-p@chr1:72895796..72895810
-
Mm9::chr1:72895819..72895843,+p@chr1:72895819..72895843
+
Mm9::chr1:72895848..72895864,+p@chr1:72895848..72895864
+
Mm9::chr1:72895881..72895885,-p@chr1:72895881..72895885
-
Mm9::chr1:72896151..72896183,+p@chr1:72896151..72896183
+
Mm9::chr1:72896186..72896195,+p@chr1:72896186..72896195
+
Mm9::chr1:72896200..72896228,+p@chr1:72896200..72896228
+
Mm9::chr1:72898569..72898578,+p@chr1:72898569..72898578
+
Mm9::chr1:72898598..72898634,+p@chr1:72898598..72898634
+
Mm9::chr1:72898643..72898650,+p@chr1:72898643..72898650
+
Mm9::chr1:72898658..72898669,+p@chr1:72898658..72898669
+
Mm9::chr1:72898728..72898736,+p@chr1:72898728..72898736
+
Mm9::chr1:72898749..72898763,+p@chr1:72898749..72898763
+
Mm9::chr1:72898789..72898796,+p@chr1:72898789..72898796
+
Mm9::chr1:72898790..72898821,-p@chr1:72898790..72898821
-
Mm9::chr1:72898813..72898818,+p@chr1:72898813..72898818
+
Mm9::chr6:88775838..88775842,-p@chr6:88775838..88775842
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
liver1.25e-1022
epithelial sac1.25e-1022
digestive gland1.25e-1022
epithelium of foregut-midgut junction1.25e-1022
anatomical boundary1.25e-1022
hepatobiliary system1.25e-1022
foregut-midgut junction1.25e-1022
hepatic diverticulum1.25e-1022
liver primordium1.25e-1022
septum transversum1.25e-1022
liver bud1.25e-1022
digestive tract diverticulum5.18e-1023
sac5.18e-1023
anatomical conduit3.23e-09122
exocrine gland6.23e-0925
exocrine system6.23e-0925
tube7.58e-09114
central nervous system2.11e-0873
neurectoderm4.39e-0864
neural plate4.39e-0864
presumptive neural plate4.39e-0864
nervous system5.35e-0875
ectoderm-derived structure1.62e-0795
ectoderm1.62e-0795
presumptive ectoderm1.62e-0795
neural tube2.46e-0752
neural rod2.46e-0752
future spinal cord2.46e-0752
neural keel2.46e-0752
regional part of spinal cord2.96e-075
gray matter of spinal cord2.96e-075
ecto-epithelium3.73e-0773
regional part of nervous system7.03e-0754


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:336&oldid=2155688"