Personal tools

MCL coexpression mm9:3016: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0.136827195255217,-0.790571367243136,-0.62770860095146,-0.790571367243136,-0.790571367243136,-0.487964354990861,-0.369743203017244,-0.237595088937155,-0.376759194852479,-0.319965579222823,-0.27616363433464,-0.220933752874565,-0.260180705714284,-0.234657849242528,-0.489687039820625,-0.532916530561085,-0.410518716076909,-0.274296000442332,-0.2680038570793,-0.486729812178725,-0.0774059908816169,0.26536734271018,0.295620004447695,-0.218833929816611,-0.337976293832227,-0.705555553433148,-0.520702729232785,-0.520618530279518,-0.715015858925739,-0.487781593439852,-0.314091228366531,-0.434533773367849,-0.320140627596001,-0.307812204211094,-0.575903963136527,-0.569173149963138,-0.583069470775552,0.817652413869197,0.541115048702499,0.549891217334061,0.674042054167131,0.702284246451273,0.651956523008701,0.262829504714364,0.195738808167387,0.255007282836649,-0.0351273574421302,-0.0842661911079084,0.111824850584655,-0.0122420861263119,-0.0154659932939875,-0.0823791981610023,-0.309670340548771,-0.220818707079057,-0.183905246739787,0.300703732739959,0.237382272864424,0.164508243928593,0.119086485793662,0.233977291365242,0.256364597062457,0.21794689357108,-0.131875262231982,-0.225846493510577,-0.260216408814491,-0.373023181550398,-0.15754741062676,-0.0824310480202866,0.0930102993637241,0.0911151350231796,0.17371105807325,0.182735548345874,0.19039926292808,0.154889810874051,0.0262687346780677,0.0634091299579425,0.394480912776013,0.431204962533427,0.37646618350793,0.202263987277462,0.169668048356109,0.159756993410048,0.331737581014108,0.334628187395136,0.401063133874684,0.253795416554445,0.198477494457237,0.158283391741125,0.606906238779767,0.695448201615402,-0.152385059536444,-0.480323362508346,-0.486729812178725,-0.472631994425812,-0.486729812178725,-0.420598815293285,-0.310874789656149,0.164164276680576,0.272682798325142,0.225562183289317,0.00899858020940791,0.0655160142726235,0.202104122924673,0.42232676042968,0.271807570315302,0.209711838273473,0.194593578079298,-0.375836225612359,-0.305493584615596,-0.103980172608875,0.109217030700131,0.0329782700637438,0.0397213050137655,-0.00664719957075799,0.0880653967922924,-0.233863856200228,0.825775732644551,-0.430132288535607,-0.18741266660885,0.0223468600325879,-0.315252744532061,-0.322297753120877,-0.607216842782818,-0.0532365633788454,0.17172320678014,-0.48482711307661,0.178972720246118,0.215302265957643,0.190719758750461,0.43674466910935,0.174866042810514,0.297976464389257,0.281692269318118,0.314160469855193,0.305290544913229,0.348369810172017,0.170714391350467,-0.123469829894267,-0.183341274515794,0.0211327931064116,0.147803542352945,0.16233430749091,0.0371216641554126,0.0729256294797747,0.117722230418663,0.0657195381931202,0.0543349435316383,0.073964442892746,0.264319778841101,0.112351653881776,0.030118063829685,0.168958551027222,0.0908162701864749,0.0363907695455039,0.00656830081194126,-0.0110088544981703,0.233395458341236,0.218352914280229,0.199141924233138,0.199885312511061,0.178769577303289,0.0485258748941542,0.0977073520806595,-0.0818083320053649,-0.0848708813447545,-0.151739611789137,-0.0312358038708975,-0.0025674746070361,-0.231407813577425,-0.154453326115781,-0.188560676218611,-0.374230499700707,-0.356793551632939,-0.16992536166216,0.279435239185089,0.427322198619757,-0.784175742073983,-0.477167725984199,0.13640934617487,0.0923667561616452,0.0668315265482168,0.0373792699064706,-0.0334677312307807,-0.0668512266062569,-0.486729812178725,-0.141375292556486,-0.135558538257465,-0.107842414899,-0.150313205170047,-0.401354108267787,-0.519996820984832,-0.58715121117664,0.226891468828595,0.0785380700004557,0.158307994356127,0.0271578285827476,-0.0799138320912284,0.0335982058645785,-0.0644437292829722,-0.349157599276008,-0.276377828884184,-0.202251178503228,-0.450958857729004,-0.150687413629109,-0.0643090211456906,-0.149798674422323,-0.194028024603119,-0.00776058696500959,-0.0839948150479213,-0.128605922206537,0.0688680327961819,-0.12891665928845,-0.082333612714153,0.0277940468024036,-0.199799106807245,-0.399902687426651,-0.358476400782208,-0.305948203018189,-0.0261950229940278,0.203035061950714,0.215720010626864,0.17872846313936,0.205862783211846,0.0376776837714915,0.0206686563866316,0.112231625076886,0.16338074438438,0.195678909485641,0.113386873362476,-0.0307497621906875,0.0124235140929005,0.0882188354699136,-0.0874173733328677,0.0534683439186385,-0.32365339730771,-0.0796884231503077,0.453110216618108,0.448714956515864,0.310836200873684,-0.281134694395175,0.149818051464667,0.13465489576344,0.101349874549157,0.113920172876684,0.189190033766717,0.151885678181442,0.0097540115042003,0.136661337936019,0.174918198476274,0.278179721545429,-0.190607359236299,0.0687048328952287,0.154826998758418,-0.146516850804397,-0.379803565392168,0.25588619687724,0.126185974356099,-0.01944472736687,-0.0109653404423775,-0.0414902934042282,0.115693657797105,-0.0368398926290519,-0.0130747082756242,-0.389557034544179,-0.366917018462875,-0.482785447353765,-0.00347957940586618,0.121907305124636,0.0594531883855488,0.0106657402111406,-0.0434166815990447,0.118819781651978,0.0176475539315519,0.208580594052059,0.684585627210171,0.961477100302656,-0.0220065927315565,-0.241397103188282,0.0867098626418997,-0.00686896816521076,0.0628613887035634,-0.0157525822772251,-0.442074101023981,0.483809459009899,-0.451342437444233,0.106335939906806,-0.0545999119612932,-0.252904624083711,-0.442218199023008,-0.366259734725164,0.164203533771691,0.136845697010083,0.136644864162758,-0.486729812178725,0.174382570962974,-0.00482952783423946,-0.0826434329472943,-0.175942753299219,-0.0662076684806068,0.0555498907309431,-0.0153828707963509,-0.325336864106413,-0.481597440372715,-0.135962768145039,0.257177254060735,0.0630589829755006,0.00247896920320301,-0.080777225983107,-0.0434926982177088,-0.0763497821408123,0.0272359548260859,-0.0961154913896574,-0.0262126022350676,0.0532015413357272,0.0757429075955907,0.0608097156791531,0.216948758666178,0.276943587161895,0.268353540776805,0.219044279902423,0.154504580083417,0.136394177696183,0.126210793450857,0.103183964143793,0.175722778243509,0.0817525194978488,0.044958951367117,-0.0207172691268891,0.126157695778921,-0.242288525187447,0.915594946908874,0.656828469871118,0.902722561648659,0.0353185808909415,-0.113796374768951,-0.216711501909636,-0.093744191354181,0.120180741873877,0.335929737641826,0.295999127857405,0.283446264525794,0.390089440523807,0.334307172712417,0.243660736809712,0.172793489388169,0.427356143799403,0.192138723430857,0.266074557254021,0.197011658736188,0.255580734103325,0.157131033353305,-0.0176660828309093,-0.00944922227646794,-0.057193983320512,-0.0820210211136272,-0.120558322518843,-0.0261121653370128,-0.10663353667263,-0.0932147090848752,-0.0592775570034589,-0.130441891258055,-0.0839511861161553,-0.149449660905626,-0.107530723819188,-0.0999579571193179,-0.169166026396355,-0.167892648693671,-0.0938332080747896,-0.0817740409980464,-0.102949182303091,-0.156151027749655,-0.0483208574384053,-0.0727090327208857,-0.0436541292945427,-0.035053924234941,-0.0543473359381927,0.0177857791794943,-0.0882188733868037,-0.0976144511272867,-0.0782835955299177,-0.227025561429317,-0.0902564629314664,-0.0871906600152427,0.0807378602985194,-0.150338521683429,0.254602413640777,0.0574382576026147,0.100721671194136,-0.130453357584212
|coexpression_dpi_cluster_scores_median=0.136827195255217,-0.790571367243136,-0.62770860095146,-0.790571367243136,-0.790571367243136,-0.487964354990861,-0.369743203017244,-0.237595088937155,-0.376759194852479,-0.319965579222823,-0.27616363433464,-0.220933752874565,-0.260180705714284,-0.234657849242528,-0.489687039820625,-0.532916530561085,-0.410518716076909,-0.274296000442332,-0.2680038570793,-0.486729812178725,-0.0774059908816169,0.26536734271018,0.295620004447695,-0.218833929816611,-0.337976293832227,-0.705555553433148,-0.520702729232785,-0.520618530279518,-0.715015858925739,-0.487781593439852,-0.314091228366531,-0.434533773367849,-0.320140627596001,-0.307812204211094,-0.575903963136527,-0.569173149963138,-0.583069470775552,0.817652413869197,0.541115048702499,0.549891217334061,0.674042054167131,0.702284246451273,0.651956523008701,0.262829504714364,0.195738808167387,0.255007282836649,-0.0351273574421302,-0.0842661911079084,0.111824850584655,-0.0122420861263119,-0.0154659932939875,-0.0823791981610023,-0.309670340548771,-0.220818707079057,-0.183905246739787,0.300703732739959,0.237382272864424,0.164508243928593,0.119086485793662,0.233977291365242,0.256364597062457,0.21794689357108,-0.131875262231982,-0.225846493510577,-0.260216408814491,-0.373023181550398,-0.15754741062676,-0.0824310480202866,0.0930102993637241,0.0911151350231796,0.17371105807325,0.182735548345874,0.19039926292808,0.154889810874051,0.0262687346780677,0.0634091299579425,0.394480912776013,0.431204962533427,0.37646618350793,0.202263987277462,0.169668048356109,0.159756993410048,0.331737581014108,0.334628187395136,0.401063133874684,0.253795416554445,0.198477494457237,0.158283391741125,0.606906238779767,0.695448201615402,-0.152385059536444,-0.480323362508346,-0.486729812178725,-0.472631994425812,-0.486729812178725,-0.420598815293285,-0.310874789656149,0.164164276680576,0.272682798325142,0.225562183289317,0.00899858020940791,0.0655160142726235,0.202104122924673,0.42232676042968,0.271807570315302,0.209711838273473,0.194593578079298,-0.375836225612359,-0.305493584615596,-0.103980172608875,0.109217030700131,0.0329782700637438,0.0397213050137655,-0.00664719957075799,0.0880653967922924,-0.233863856200228,0.825775732644551,-0.430132288535607,-0.18741266660885,0.0223468600325879,-0.315252744532061,-0.322297753120877,-0.607216842782818,-0.0532365633788454,0.17172320678014,-0.48482711307661,0.178972720246118,0.215302265957643,0.190719758750461,0.43674466910935,0.174866042810514,0.297976464389257,0.281692269318118,0.314160469855193,0.305290544913229,0.348369810172017,0.170714391350467,-0.123469829894267,-0.183341274515794,0.0211327931064116,0.147803542352945,0.16233430749091,0.0371216641554126,0.0729256294797747,0.117722230418663,0.0657195381931202,0.0543349435316383,0.073964442892746,0.264319778841101,0.112351653881776,0.030118063829685,0.168958551027222,0.0908162701864749,0.0363907695455039,0.00656830081194126,-0.0110088544981703,0.233395458341236,0.218352914280229,0.199141924233138,0.199885312511061,0.178769577303289,0.0485258748941542,0.0977073520806595,-0.0818083320053649,-0.0848708813447545,-0.151739611789137,-0.0312358038708975,-0.0025674746070361,-0.231407813577425,-0.154453326115781,-0.188560676218611,-0.374230499700707,-0.356793551632939,-0.16992536166216,0.279435239185089,0.427322198619757,-0.784175742073983,-0.477167725984199,0.13640934617487,0.0923667561616452,0.0668315265482168,0.0373792699064706,-0.0334677312307807,-0.0668512266062569,-0.486729812178725,-0.141375292556486,-0.135558538257465,-0.107842414899,-0.150313205170047,-0.401354108267787,-0.519996820984832,-0.58715121117664,0.226891468828595,0.0785380700004557,0.158307994356127,0.0271578285827476,-0.0799138320912284,0.0335982058645785,-0.0644437292829722,-0.349157599276008,-0.276377828884184,-0.202251178503228,-0.450958857729004,-0.150687413629109,-0.0643090211456906,-0.149798674422323,-0.194028024603119,-0.00776058696500959,-0.0839948150479213,-0.128605922206537,0.0688680327961819,-0.12891665928845,-0.082333612714153,0.0277940468024036,-0.199799106807245,-0.399902687426651,-0.358476400782208,-0.305948203018189,-0.0261950229940278,0.203035061950714,0.215720010626864,0.17872846313936,0.205862783211846,0.0376776837714915,0.0206686563866316,0.112231625076886,0.16338074438438,0.195678909485641,0.113386873362476,-0.0307497621906875,0.0124235140929005,0.0882188354699136,-0.0874173733328677,0.0534683439186385,-0.32365339730771,-0.0796884231503077,0.453110216618108,0.448714956515864,0.310836200873684,-0.281134694395175,0.149818051464667,0.13465489576344,0.101349874549157,0.113920172876684,0.189190033766717,0.151885678181442,0.0097540115042003,0.136661337936019,0.174918198476274,0.278179721545429,-0.190607359236299,0.0687048328952287,0.154826998758418,-0.146516850804397,-0.379803565392168,0.25588619687724,0.126185974356099,-0.01944472736687,-0.0109653404423775,-0.0414902934042282,0.115693657797105,-0.0368398926290519,-0.0130747082756242,-0.389557034544179,-0.366917018462875,-0.482785447353765,-0.00347957940586618,0.121907305124636,0.0594531883855488,0.0106657402111406,-0.0434166815990447,0.118819781651978,0.0176475539315519,0.208580594052059,0.684585627210171,0.961477100302656,-0.0220065927315565,-0.241397103188282,0.0867098626418997,-0.00686896816521076,0.0628613887035634,-0.0157525822772251,-0.442074101023981,0.483809459009899,-0.451342437444233,0.106335939906806,-0.0545999119612932,-0.252904624083711,-0.442218199023008,-0.366259734725164,0.164203533771691,0.136845697010083,0.136644864162758,-0.486729812178725,0.174382570962974,-0.00482952783423946,-0.0826434329472943,-0.175942753299219,-0.0662076684806068,0.0555498907309431,-0.0153828707963509,-0.325336864106413,-0.481597440372715,-0.135962768145039,0.257177254060735,0.0630589829755006,0.00247896920320301,-0.080777225983107,-0.0434926982177088,-0.0763497821408123,0.0272359548260859,-0.0961154913896574,-0.0262126022350676,0.0532015413357272,0.0757429075955907,0.0608097156791531,0.216948758666178,0.276943587161895,0.268353540776805,0.219044279902423,0.154504580083417,0.136394177696183,0.126210793450857,0.103183964143793,0.175722778243509,0.0817525194978488,0.044958951367117,-0.0207172691268891,0.126157695778921,-0.242288525187447,0.915594946908874,0.656828469871118,0.902722561648659,0.0353185808909415,-0.113796374768951,-0.216711501909636,-0.093744191354181,0.120180741873877,0.335929737641826,0.295999127857405,0.283446264525794,0.390089440523807,0.334307172712417,0.243660736809712,0.172793489388169,0.427356143799403,0.192138723430857,0.266074557254021,0.197011658736188,0.255580734103325,0.157131033353305,-0.0176660828309093,-0.00944922227646794,-0.057193983320512,-0.0820210211136272,-0.120558322518843,-0.0261121653370128,-0.10663353667263,-0.0932147090848752,-0.0592775570034589,-0.130441891258055,-0.0839511861161553,-0.149449660905626,-0.107530723819188,-0.0999579571193179,-0.169166026396355,-0.167892648693671,-0.0938332080747896,-0.0817740409980464,-0.102949182303091,-0.156151027749655,-0.0483208574384053,-0.0727090327208857,-0.0436541292945427,-0.035053924234941,-0.0543473359381927,0.0177857791794943,-0.0882188733868037,-0.0976144511272867,-0.0782835955299177,-0.227025561429317,-0.0902564629314664,-0.0871906600152427,0.0807378602985194,-0.150338521683429,0.254602413640777,0.0574382576026147,0.100721671194136,-0.130453357584212
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000393!4.85e-10!39;CL:0000211!4.85e-10!39;CL:0000055!6.42e-09!49;CL:0000540!5.41e-08!33;CL:0000047!5.41e-08!33;CL:0000031!5.41e-08!33;CL:0000404!5.41e-08!33;CL:0000117!4.96e-07!23;CL:0000337!4.96e-07!23;CL:0002319!5.22e-07!43;CL:0000221!6.64e-07!44;CL:0000133!6.64e-07!44
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001016!1.50e-16!75;UBERON:0001017!2.44e-15!73;UBERON:0004121!9.73e-15!95;UBERON:0000924!9.73e-15!95;UBERON:0006601!9.73e-15!95;UBERON:0000073!1.42e-13!54;UBERON:0002346!4.38e-13!64;UBERON:0003075!4.38e-13!64;UBERON:0007284!4.38e-13!64;UBERON:0001049!1.55e-12!52;UBERON:0005068!1.55e-12!52;UBERON:0006241!1.55e-12!52;UBERON:0007135!1.55e-12!52;UBERON:0010371!2.19e-11!73;UBERON:0000955!4.94e-11!47;UBERON:0006238!4.94e-11!47;UBERON:0002020!1.07e-10!34;UBERON:0002616!1.35e-10!46;UBERON:0003056!2.15e-10!49;UBERON:0003080!2.54e-10!40;UBERON:0002780!8.65e-10!39;UBERON:0001890!8.65e-10!39;UBERON:0006240!8.65e-10!39;UBERON:0010314!2.13e-09!92;UBERON:0003528!2.22e-09!29;UBERON:0002791!2.22e-09!29;UBERON:0001893!2.22e-09!29
}}
}}

Revision as of 19:23, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:85166767..85166774,+p6@Atxn10
Mm9::chr15:85166780..85166817,+p2@Atxn10
Mm9::chr15:85166831..85166847,+p4@Atxn10


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
nervous system1.50e-1675
central nervous system2.44e-1573
ectoderm-derived structure9.73e-1595
ectoderm9.73e-1595
presumptive ectoderm9.73e-1595
regional part of nervous system1.42e-1354
neurectoderm4.38e-1364
neural plate4.38e-1364
presumptive neural plate4.38e-1364
neural tube1.55e-1252
neural rod1.55e-1252
future spinal cord1.55e-1252
neural keel1.55e-1252
ecto-epithelium2.19e-1173
brain4.94e-1147
future brain4.94e-1147
gray matter1.07e-1034
regional part of brain1.35e-1046
pre-chordal neural plate2.15e-1049
anterior neural tube2.54e-1040
regional part of forebrain8.65e-1039
forebrain8.65e-1039
future forebrain8.65e-1039
structure with developmental contribution from neural crest2.13e-0992
brain grey matter2.22e-0929
regional part of telencephalon2.22e-0929
telencephalon2.22e-0929


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}